RNA–Protein interactions for RNA: ENST00000533096.5

COPB1-209, Transcript of coatomer protein complex subunit beta 1, humanhuman

TSL 4

Gene COPB1, Length 547 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-209ENST00000533096 NISCHQ9Y2I1 1504 aa32.61■■■□□ 2.81
COPB1-209ENST00000533096 ABCC9O60706 1549 aa29.86■■■□□ 2.37
COPB1-209ENST00000533096 CCDC180Q9P1Z9 1646 aa29.12■■■□□ 2.25
COPB1-209ENST00000533096 DNAJC5BQ9UF47 199 aa28.43■■■□□ 2.14
COPB1-209ENST00000533096 DCAF8L2P0C7V8 631 aa28.21■■■□□ 2.11
COPB1-209ENST00000533096 RB1CC1Q8TDY2 1594 aa28.06■■■□□ 2.08
COPB1-209ENST00000533096 PABPN1Q86U42 306 aaKnown RBP eCLIP27.96■■■□□ 2.07
COPB1-209ENST00000533096 NACADO15069 1562 aa27.77■■■□□ 2.04
COPB1-209ENST00000533096 BICRAQ9NZM4 1560 aa27.22■■□□□ 1.95
COPB1-209ENST00000533096 UNC13AQ9UPW8 1703 aa27.2■■□□□ 1.94
COPB1-209ENST00000533096 MYO15BQ96JP2 1530 aa27.19■■□□□ 1.94
COPB1-209ENST00000533096 ZCCHC6Q5VYS8 1495 aaKnown RBP26.87■■□□□ 1.89
COPB1-209ENST00000533096 CECR2Q9BXF3 1484 aa26.87■■□□□ 1.89
COPB1-209ENST00000533096 SCRIBQ14160 1630 aa26.78■■□□□ 1.88
COPB1-209ENST00000533096 CC2D2AQ9P2K1 1620 aa26.77■■□□□ 1.88
COPB1-209ENST00000533096 DCAF1Q9Y4B6 1507 aa26.75■■□□□ 1.87
COPB1-209ENST00000533096 SHROOM4Q9ULL8 1493 aa26.69■■□□□ 1.86
COPB1-209ENST00000533096 EIF4G1Q04637 1599 aaKnown RBP26.62■■□□□ 1.85
COPB1-209ENST00000533096 DNAJC5Q9H3Z4 198 aa26.27■■□□□ 1.8
COPB1-209ENST00000533096 ERCC6Q03468 1493 aa25.79■■□□□ 1.72
COPB1-209ENST00000533096 NCAPD3P42695 1498 aa25.75■■□□□ 1.71
COPB1-209ENST00000533096 CUX2O14529 1486 aa25.66■■□□□ 1.7
COPB1-209ENST00000533096 ATAD2BQ9ULI0 1458 aa25.65■■□□□ 1.7
COPB1-209ENST00000533096 NESP48681 1621 aa25.52■■□□□ 1.68
COPB1-209ENST00000533096 SMARCA2P51531 1590 aa25.46■■□□□ 1.67
COPB1-209ENST00000533096 SMARCA4P51532 1647 aa25.41■■□□□ 1.66
COPB1-209ENST00000533096 BAZ1BQ9UIG0 1483 aaKnown RBP25.39■■□□□ 1.65
COPB1-209ENST00000533096 HMGXB3Q12766 1538 aa25.37■■□□□ 1.65
COPB1-209ENST00000533096 BAZ1AQ9NRL2 1556 aaPredicted RBP25.28■■□□□ 1.64
COPB1-209ENST00000533096 TRIM41Q8WV44 630 aa25.18■■□□□ 1.62
COPB1-209ENST00000533096 MROH2BQ7Z745 1585 aa25.18■■□□□ 1.62
COPB1-209ENST00000533096 PDS5BQ9NTI5 1447 aa25.15■■□□□ 1.62
COPB1-209ENST00000533096 LAMC3Q9Y6N6 1575 aa25.1■■□□□ 1.61
COPB1-209ENST00000533096 PEG3Q9GZU2 1588 aa25.08■■□□□ 1.61
COPB1-209ENST00000533096 THOC2Q8NI27 1593 aaKnown RBP25.06■■□□□ 1.6
COPB1-209ENST00000533096 CADPSQ9ULU8 1353 aa25.05■■□□□ 1.6
COPB1-209ENST00000533096 KIF21AQ7Z4S6 1674 aa24.94■■□□□ 1.58
COPB1-209ENST00000533096 MRC2Q9UBG0 1479 aa24.88■■□□□ 1.57
COPB1-209ENST00000533096 WIZO95785 1651 aa24.79■■□□□ 1.56
COPB1-209ENST00000533096 OSCARQ8IYS5 282 aa24.76■■□□□ 1.55
COPB1-209ENST00000533096 CEP164Q9UPV0 1460 aa24.73■■□□□ 1.55
COPB1-209ENST00000533096 WDR62O43379 1518 aa24.71■■□□□ 1.55
COPB1-209ENST00000533096 FANCD2Q9BXW9 1451 aa24.71■■□□□ 1.55
COPB1-209ENST00000533096 RSF1Q96T23 1441 aaPredicted RBP24.6■■□□□ 1.53
COPB1-209ENST00000533096 CFTRP13569 1480 aa24.59■■□□□ 1.53
COPB1-209ENST00000533096 URB2Q14146 1524 aaKnown RBP24.5■■□□□ 1.51
COPB1-209ENST00000533096 TOP2AP11388 1531 aaKnown RBP24.41■■□□□ 1.5
COPB1-209ENST00000533096 CCDC88BA6NC98 1476 aa24.31■■□□□ 1.48
COPB1-209ENST00000533096 ZNF608Q9ULD9 1512 aaPredicted RBP24.3■■□□□ 1.48
COPB1-209ENST00000533096 CYB5RLQ6IPT4 315 aa24.29■■□□□ 1.48
COPB1-209ENST00000533096 FBLN2P98095 1184 aa24.27■■□□□ 1.48
COPB1-209ENST00000533096 IFT140Q96RY7 1462 aa24.25■■□□□ 1.47
COPB1-209ENST00000533096 TOPBP1Q92547 1522 aa24.17■■□□□ 1.46
COPB1-209ENST00000533096 TRHP20396 242 aaPredicted RBP24.17■■□□□ 1.46
COPB1-209ENST00000533096 RIMBP3CA6NJZ7 1639 aa24.16■■□□□ 1.46
COPB1-209ENST00000533096 RIMBP3BA6NNM3 1639 aa24.16■■□□□ 1.46
COPB1-209ENST00000533096 RIMBP3Q9UFD9 1639 aa24.16■■□□□ 1.46
COPB1-209ENST00000533096 AQRO60306 1485 aaKnown RBP eCLIP24.13■■□□□ 1.456e-14■■■■□ 26.6
COPB1-209ENST00000533096 ARHGEF11O15085 1522 aa24.1■■□□□ 1.45
COPB1-209ENST00000533096 ABCC8Q09428 1581 aa24.08■■□□□ 1.44
COPB1-209ENST00000533096 TDRD9Q8NDG6 1382 aaKnown RBP24■■□□□ 1.43
COPB1-209ENST00000533096 EIF4G3O43432 1585 aaKnown RBP23.96■■□□□ 1.43
COPB1-209ENST00000533096 DNMBPQ6XZF7 1577 aa23.96■■□□□ 1.43
COPB1-209ENST00000533096 RAD54L2Q9Y4B4 1467 aa23.95■■□□□ 1.42
COPB1-209ENST00000533096 SOGA1O94964 1423 aa23.94■■□□□ 1.42
COPB1-209ENST00000533096 PRDM2Q13029 1718 aa23.94■■□□□ 1.42
COPB1-209ENST00000533096 CHMP7Q8WUX9 453 aaPredicted RBP23.94■■□□□ 1.42
COPB1-209ENST00000533096 POLA1P09884 1462 aaPredicted RBP23.9■■□□□ 1.42
COPB1-209ENST00000533096 TARBP1Q13395 1621 aaKnown RBP23.86■■□□□ 1.41
COPB1-209ENST00000533096 ARAP1Q96P48 1450 aa23.86■■□□□ 1.41
COPB1-209ENST00000533096 CHD1O14646 1710 aa23.79■■□□□ 1.4
COPB1-209ENST00000533096 SNAPC4Q5SXM2 1469 aa23.76■■□□□ 1.39
COPB1-209ENST00000533096 FGD5Q6ZNL6 1462 aa23.75■■□□□ 1.39
COPB1-209ENST00000533096 AEBP2Q6ZN18 517 aaPredicted RBP23.68■■□□□ 1.38
COPB1-209ENST00000533096 GRIN2BQ13224 1484 aa23.65■■□□□ 1.38
COPB1-209ENST00000533096 SUPT5HO00267 1087 aaKnown RBP23.64■■□□□ 1.37
COPB1-209ENST00000533096 CUX1P39880 1505 aa23.64■■□□□ 1.37
COPB1-209ENST00000533096 MAGI1Q96QZ7 1491 aaPredicted RBP23.61■■□□□ 1.37
COPB1-209ENST00000533096 SYNJ1O43426 1573 aa23.58■■□□□ 1.37
COPB1-209ENST00000533096 SYNJ2O15056 1496 aa23.57■■□□□ 1.36
COPB1-209ENST00000533096 CLASP1Q7Z460 1538 aa23.57■■□□□ 1.36
COPB1-209ENST00000533096 GAPVD1Q14C86 1478 aa23.56■■□□□ 1.36
COPB1-209ENST00000533096 WDR97A6NE52 1622 aa23.46■■□□□ 1.35
COPB1-209ENST00000533096 ABCA10Q8WWZ4 1543 aa23.39■■□□□ 1.34
COPB1-209ENST00000533096 WRNQ14191 1432 aaPredicted RBP eCLIP23.36■■□□□ 1.33
COPB1-209ENST00000533096 GRIN2AQ12879 1464 aa23.32■■□□□ 1.32
COPB1-209ENST00000533096 ERCC6L2Q5T890 1561 aa23.31■■□□□ 1.32
COPB1-209ENST00000533096 PBRM1Q86U86 1689 aa23.3■■□□□ 1.32
COPB1-209ENST00000533096 ABCA5Q8WWZ7 1642 aa23.26■■□□□ 1.31
COPB1-209ENST00000533096 JPH4Q96JJ6 628 aa23.26■■□□□ 1.31
COPB1-209ENST00000533096 FHAD1B1AJZ9 1412 aa23.24■■□□□ 1.31
COPB1-209ENST00000533096 NUP160Q12769 1436 aa23.23■■□□□ 1.31
COPB1-209ENST00000533096 CEP170Q5SW79 1584 aa23.2■■□□□ 1.3
COPB1-209ENST00000533096 NPM1P06748 294 aaKnown RBP eCLIP23.19■■□□□ 1.3
COPB1-209ENST00000533096 PRG4Q92954 1404 aaPredicted RBP23.18■■□□□ 1.3
COPB1-209ENST00000533096 FAM69CQ0P6D2 419 aa23.16■■□□□ 1.3
COPB1-209ENST00000533096 ADAMTS12P58397 1594 aa23.14■■□□□ 1.29
COPB1-209ENST00000533096 TOP2BQ02880 1626 aa23.08■■□□□ 1.29
COPB1-209ENST00000533096 TTBK1Q5TCY1 1321 aaPredicted RBP23.08■■□□□ 1.28
COPB1-209ENST00000533096 ERICH3Q5RHP9 1530 aa23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms