RNA–Protein interactions for RNA: ENST00000533001.1

KNL1-211, Transcript of kinetochore scaffold 1, humanhuman

TSL 1 (best)

Gene KNL1, Length 5,923 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KNL1-211ENST00000533001 NISCHQ9Y2I1 1504 aa5.67□□□□□ -1.5
KNL1-211ENST00000533001 DNAJC5BQ9UF47 199 aa5.22□□□□□ -1.57
KNL1-211ENST00000533001 CCDC180Q9P1Z9 1646 aa5.17□□□□□ -1.58
KNL1-211ENST00000533001 UNC13AQ9UPW8 1703 aa5.1□□□□□ -1.59
KNL1-211ENST00000533001 ABCC9O60706 1549 aa5.08□□□□□ -1.6
KNL1-211ENST00000533001 BICRAQ9NZM4 1560 aa5.08□□□□□ -1.6
KNL1-211ENST00000533001 MYO15BQ96JP2 1530 aa4.92□□□□□ -1.62
KNL1-211ENST00000533001 NACADO15069 1562 aa4.82□□□□□ -1.64
KNL1-211ENST00000533001 RB1CC1Q8TDY2 1594 aa4.79□□□□□ -1.64
KNL1-211ENST00000533001 DCAF1Q9Y4B6 1507 aa4.78□□□□□ -1.64
KNL1-211ENST00000533001 CC2D2AQ9P2K1 1620 aa4.73□□□□□ -1.65
KNL1-211ENST00000533001 SHROOM4Q9ULL8 1493 aa4.73□□□□□ -1.65
KNL1-211ENST00000533001 EIF4G1Q04637 1599 aaKnown RBP4.73□□□□□ -1.65
KNL1-211ENST00000533001 ZCCHC6Q5VYS8 1495 aaKnown RBP4.72□□□□□ -1.65
KNL1-211ENST00000533001 DNAJC5Q9H3Z4 198 aa4.67□□□□□ -1.66
KNL1-211ENST00000533001 SRCAPQ6ZRS2 3230 aa4.66□□□□□ -1.66
KNL1-211ENST00000533001 PABPN1Q86U42 306 aaKnown RBP eCLIP4.6□□□□□ -1.67
KNL1-211ENST00000533001 CECR2Q9BXF3 1484 aa4.6□□□□□ -1.67
KNL1-211ENST00000533001 THOC2Q8NI27 1593 aaKnown RBP4.59□□□□□ -1.67
KNL1-211ENST00000533001 PEG3Q9GZU2 1588 aa4.59□□□□□ -1.67
KNL1-211ENST00000533001 NCAPD3P42695 1498 aa4.54□□□□□ -1.68
KNL1-211ENST00000533001 SCRIBQ14160 1630 aa4.52□□□□□ -1.69
KNL1-211ENST00000533001 NESP48681 1621 aa4.49□□□□□ -1.69
KNL1-211ENST00000533001 HMGXB3Q12766 1538 aa4.48□□□□□ -1.69
KNL1-211ENST00000533001 ATAD2BQ9ULI0 1458 aa4.48□□□□□ -1.69
KNL1-211ENST00000533001 CUX2O14529 1486 aa4.47□□□□□ -1.69
KNL1-211ENST00000533001 KIF21AQ7Z4S6 1674 aa4.45□□□□□ -1.7
KNL1-211ENST00000533001 SMARCA4P51532 1647 aa4.44□□□□□ -1.7
KNL1-211ENST00000533001 MROH2BQ7Z745 1585 aa4.41□□□□□ -1.7
KNL1-211ENST00000533001 WDR62O43379 1518 aa4.4□□□□□ -1.71
KNL1-211ENST00000533001 LAMC3Q9Y6N6 1575 aa4.37□□□□□ -1.71
KNL1-211ENST00000533001 URB2Q14146 1524 aaKnown RBP4.33□□□□□ -1.72
KNL1-211ENST00000533001 TARBP1Q13395 1621 aaKnown RBP4.32□□□□□ -1.72
KNL1-211ENST00000533001 WIZO95785 1651 aa4.31□□□□□ -1.72
KNL1-211ENST00000533001 CFTRP13569 1480 aa4.31□□□□□ -1.72
KNL1-211ENST00000533001 SMARCA2P51531 1590 aa4.3□□□□□ -1.72
KNL1-211ENST00000533001 BAZ1AQ9NRL2 1556 aaPredicted RBP4.3□□□□□ -1.72
KNL1-211ENST00000533001 RIMBP3CA6NJZ7 1639 aa4.3□□□□□ -1.72
KNL1-211ENST00000533001 RIMBP3BA6NNM3 1639 aa4.3□□□□□ -1.72
KNL1-211ENST00000533001 RIMBP3Q9UFD9 1639 aa4.3□□□□□ -1.72
KNL1-211ENST00000533001 ZNF608Q9ULD9 1512 aaPredicted RBP4.28□□□□□ -1.72
KNL1-211ENST00000533001 PRDM2Q13029 1718 aa4.28□□□□□ -1.72
KNL1-211ENST00000533001 WDR97A6NE52 1622 aa4.27□□□□□ -1.73
KNL1-211ENST00000533001 CLASP1Q7Z460 1538 aa4.26□□□□□ -1.73
KNL1-211ENST00000533001 UTRNP46939 3433 aa4.26□□□□□ -1.73
KNL1-211ENST00000533001 CHIC1Q5VXU3 224 aa4.26□□□□□ -1.73
KNL1-211ENST00000533001 ARAP1Q96P48 1450 aa4.26□□□□□ -1.73
KNL1-211ENST00000533001 ARHGEF11O15085 1522 aa4.25□□□□□ -1.73
KNL1-211ENST00000533001 CADPSQ9ULU8 1353 aa4.25□□□□□ -1.73
KNL1-211ENST00000533001 KIF13AQ9H1H9 1805 aa4.22□□□□□ -1.73
KNL1-211ENST00000533001 EIF4G3O43432 1585 aaKnown RBP4.21□□□□□ -1.74
KNL1-211ENST00000533001 ERCC6L2Q5T890 1561 aa4.21□□□□□ -1.74
KNL1-211ENST00000533001 MRC2Q9UBG0 1479 aa4.21□□□□□ -1.74
KNL1-211ENST00000533001 EP400Q96L91 3159 aa4.21□□□□□ -1.74
KNL1-211ENST00000533001 RSF1Q96T23 1441 aaPredicted RBP4.21□□□□□ -1.74
KNL1-211ENST00000533001 CHD1O14646 1710 aa4.21□□□□□ -1.74
KNL1-211ENST00000533001 BAZ1BQ9UIG0 1483 aaKnown RBP4.2□□□□□ -1.74
KNL1-211ENST00000533001 GOLGB1Q14789 3259 aaKnown RBP4.19□□□□□ -1.74
KNL1-211ENST00000533001 SHROOM2Q13796 1616 aa4.19□□□□□ -1.74
KNL1-211ENST00000533001 FANCD2Q9BXW9 1451 aa4.17□□□□□ -1.74
KNL1-211ENST00000533001 TOPBP1Q92547 1522 aa4.17□□□□□ -1.74
KNL1-211ENST00000533001 TOP2AP11388 1531 aaKnown RBP4.17□□□□□ -1.74
KNL1-211ENST00000533001 PPRC1Q5VV67 1664 aaKnown RBP4.17□□□□□ -1.74
KNL1-211ENST00000533001 ABCA5Q8WWZ7 1642 aa4.15□□□□□ -1.74
KNL1-211ENST00000533001 POLA1P09884 1462 aaPredicted RBP4.14□□□□□ -1.75
KNL1-211ENST00000533001 CCDC88BA6NC98 1476 aa4.13□□□□□ -1.75
KNL1-211ENST00000533001 PDS5BQ9NTI5 1447 aa4.13□□□□□ -1.75
KNL1-211ENST00000533001 CEP350Q5VT06 3117 aa4.13□□□□□ -1.75
KNL1-211ENST00000533001 ERCC6Q03468 1493 aa4.13□□□□□ -1.75
KNL1-211ENST00000533001 CUX1P39880 1505 aa4.12□□□□□ -1.75
KNL1-211ENST00000533001 PCNTO95613 3336 aa4.11□□□□□ -1.75
KNL1-211ENST00000533001 DNMBPQ6XZF7 1577 aa4.11□□□□□ -1.75
KNL1-211ENST00000533001 CEP164Q9UPV0 1460 aa4.11□□□□□ -1.75
KNL1-211ENST00000533001 DCAF8L2P0C7V8 631 aa4.1□□□□□ -1.75
KNL1-211ENST00000533001 COL17A1Q9UMD9 1497 aaPredicted RBP4.1□□□□□ -1.75
KNL1-211ENST00000533001 NUP160Q12769 1436 aa4.08□□□□□ -1.76
KNL1-211ENST00000533001 CEP170Q5SW79 1584 aa4.08□□□□□ -1.76
KNL1-211ENST00000533001 AQRO60306 1485 aaKnown RBP eCLIP4.08□□□□□ -1.761e-6■■■■□ 22.4
KNL1-211ENST00000533001 SIGLEC1Q9BZZ2 1709 aa4.07□□□□□ -1.76
KNL1-211ENST00000533001 IFT140Q96RY7 1462 aa4.07□□□□□ -1.76
KNL1-211ENST00000533001 RAD54L2Q9Y4B4 1467 aa4.07□□□□□ -1.76
KNL1-211ENST00000533001 AEBP2Q6ZN18 517 aaPredicted RBP4.05□□□□□ -1.76
KNL1-211ENST00000533001 PBRM1Q86U86 1689 aa4.05□□□□□ -1.76
KNL1-211ENST00000533001 DIP2BQ9P265 1576 aa4.05□□□□□ -1.76
KNL1-211ENST00000533001 ADCY10Q96PN6 1610 aa4.05□□□□□ -1.76
KNL1-211ENST00000533001 ABCA10Q8WWZ4 1543 aa4.04□□□□□ -1.76
KNL1-211ENST00000533001 BIVM-ERCC5R4GMW8 1640 aa4.04□□□□□ -1.76
KNL1-211ENST00000533001 RUSC2Q8N2Y8 1516 aa4.03□□□□□ -1.76
KNL1-211ENST00000533001 SYNJ1O43426 1573 aa4.02□□□□□ -1.77
KNL1-211ENST00000533001 ADAMTS12P58397 1594 aa4.02□□□□□ -1.77
KNL1-211ENST00000533001 MAPKBP1O60336 1514 aa4.01□□□□□ -1.77
KNL1-211ENST00000533001 FGD5Q6ZNL6 1462 aa4.01□□□□□ -1.77
KNL1-211ENST00000533001 MAGI1Q96QZ7 1491 aaPredicted RBP4□□□□□ -1.77
KNL1-211ENST00000533001 OSCARQ8IYS5 282 aa4□□□□□ -1.77
KNL1-211ENST00000533001 SNAPC4Q5SXM2 1469 aa4□□□□□ -1.77
KNL1-211ENST00000533001 KDM4FA0A1W2PPD8 638 aa4□□□□□ -1.77
KNL1-211ENST00000533001 SYNJ2O15056 1496 aa3.99□□□□□ -1.77
KNL1-211ENST00000533001 TOP2BQ02880 1626 aa3.98□□□□□ -1.77
KNL1-211ENST00000533001 KDM5BQ9UGL1 1544 aa3.98□□□□□ -1.77
KNL1-211ENST00000533001 GAPVD1Q14C86 1478 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms