RNA–Protein interactions for RNA: ENST00000531041.1

SF3B2-211, Transcript of splicing factor 3b subunit 2, humanhuman

TSL 1 (best)

Gene SF3B2, Length 1,440 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B2-211ENST00000531041 NISCHQ9Y2I1 1504 aa40.35■■■■■ 4.05
SF3B2-211ENST00000531041 CCDC180Q9P1Z9 1646 aa35.75■■■■□ 3.31
SF3B2-211ENST00000531041 ABCC9O60706 1549 aa34.38■■■■□ 3.09
SF3B2-211ENST00000531041 ZCCHC6Q5VYS8 1495 aaKnown RBP33.71■■■□□ 2.99
SF3B2-211ENST00000531041 NACADO15069 1562 aa33.44■■■□□ 2.94
SF3B2-211ENST00000531041 DCAF1Q9Y4B6 1507 aa33.44■■■□□ 2.94
SF3B2-211ENST00000531041 DCAF8L2P0C7V8 631 aa33.42■■■□□ 2.94
SF3B2-211ENST00000531041 MYO15BQ96JP2 1530 aa33.41■■■□□ 2.94
SF3B2-211ENST00000531041 RB1CC1Q8TDY2 1594 aa33.35■■■□□ 2.93
SF3B2-211ENST00000531041 UNC13AQ9UPW8 1703 aa32.73■■■□□ 2.83
SF3B2-211ENST00000531041 SCRIBQ14160 1630 aa32.57■■■□□ 2.81
SF3B2-211ENST00000531041 BICRAQ9NZM4 1560 aa32.34■■■□□ 2.77
SF3B2-211ENST00000531041 PABPN1Q86U42 306 aaKnown RBP eCLIP32.17■■■□□ 2.74
SF3B2-211ENST00000531041 SHROOM4Q9ULL8 1493 aa32.07■■■□□ 2.72
SF3B2-211ENST00000531041 EIF4G1Q04637 1599 aaKnown RBP31.42■■■□□ 2.62
SF3B2-211ENST00000531041 CECR2Q9BXF3 1484 aa31.35■■■□□ 2.61
SF3B2-211ENST00000531041 BAZ1AQ9NRL2 1556 aaPredicted RBP31.25■■■□□ 2.59
SF3B2-211ENST00000531041 SMARCA4P51532 1647 aa31.24■■■□□ 2.59
SF3B2-211ENST00000531041 CC2D2AQ9P2K1 1620 aa31.18■■■□□ 2.58
SF3B2-211ENST00000531041 MROH2BQ7Z745 1585 aa31.09■■■□□ 2.57
SF3B2-211ENST00000531041 DNAJC5BQ9UF47 199 aa31.09■■■□□ 2.57
SF3B2-211ENST00000531041 PEG3Q9GZU2 1588 aa30.94■■■□□ 2.54
SF3B2-211ENST00000531041 SMARCA2P51531 1590 aa30.91■■■□□ 2.54
SF3B2-211ENST00000531041 RSF1Q96T23 1441 aaPredicted RBP30.89■■■□□ 2.54
SF3B2-211ENST00000531041 ATAD2BQ9ULI0 1458 aa30.89■■■□□ 2.54
SF3B2-211ENST00000531041 WIZO95785 1651 aa30.83■■■□□ 2.53
SF3B2-211ENST00000531041 NCAPD3P42695 1498 aa30.81■■■□□ 2.52
SF3B2-211ENST00000531041 HMGXB3Q12766 1538 aa30.74■■■□□ 2.51
SF3B2-211ENST00000531041 BAZ1BQ9UIG0 1483 aaKnown RBP30.67■■■□□ 2.5
SF3B2-211ENST00000531041 TOP2AP11388 1531 aaKnown RBP30.51■■■□□ 2.47
SF3B2-211ENST00000531041 SUPT5HO00267 1087 aaKnown RBP30.42■■■□□ 2.46
SF3B2-211ENST00000531041 CCDC88BA6NC98 1476 aa30.12■■■□□ 2.41
SF3B2-211ENST00000531041 LAMC3Q9Y6N6 1575 aa29.97■■■□□ 2.39
SF3B2-211ENST00000531041 CADPSQ9ULU8 1353 aa29.92■■■□□ 2.38
SF3B2-211ENST00000531041 NESP48681 1621 aa29.91■■■□□ 2.38
SF3B2-211ENST00000531041 CFTRP13569 1480 aa29.87■■■□□ 2.37
SF3B2-211ENST00000531041 PRDM2Q13029 1718 aa29.85■■■□□ 2.37
SF3B2-211ENST00000531041 PDS5BQ9NTI5 1447 aa29.69■■■□□ 2.34
SF3B2-211ENST00000531041 KIF21AQ7Z4S6 1674 aa29.67■■■□□ 2.34
SF3B2-211ENST00000531041 ERCC6Q03468 1493 aa29.59■■■□□ 2.33
SF3B2-211ENST00000531041 FANCD2Q9BXW9 1451 aa29.58■■■□□ 2.33
SF3B2-211ENST00000531041 CEP164Q9UPV0 1460 aa29.51■■■□□ 2.32
SF3B2-211ENST00000531041 THOC2Q8NI27 1593 aaKnown RBP29.41■■■□□ 2.3
SF3B2-211ENST00000531041 MRC2Q9UBG0 1479 aa29.36■■■□□ 2.29
SF3B2-211ENST00000531041 WDR62O43379 1518 aa29.28■■■□□ 2.28
SF3B2-211ENST00000531041 URB2Q14146 1524 aaKnown RBP29.26■■■□□ 2.28
SF3B2-211ENST00000531041 ABCC8Q09428 1581 aa29.23■■■□□ 2.27
SF3B2-211ENST00000531041 DNMBPQ6XZF7 1577 aa29.21■■■□□ 2.27
SF3B2-211ENST00000531041 TOPBP1Q92547 1522 aa29.18■■■□□ 2.26
SF3B2-211ENST00000531041 CUX1P39880 1505 aa29.14■■■□□ 2.26
SF3B2-211ENST00000531041 CUX2O14529 1486 aa29.14■■■□□ 2.26
SF3B2-211ENST00000531041 WRNQ14191 1432 aaPredicted RBP eCLIP29.11■■■□□ 2.25
SF3B2-211ENST00000531041 BIVM-ERCC5R4GMW8 1640 aa29.08■■■□□ 2.25
SF3B2-211ENST00000531041 TOP2BQ02880 1626 aa29.06■■■□□ 2.24
SF3B2-211ENST00000531041 SYNJ1O43426 1573 aa29.05■■■□□ 2.24
SF3B2-211ENST00000531041 POLA1P09884 1462 aaPredicted RBP28.96■■■□□ 2.23
SF3B2-211ENST00000531041 FGD5Q6ZNL6 1462 aa28.96■■■□□ 2.23
SF3B2-211ENST00000531041 TARBP1Q13395 1621 aaKnown RBP28.87■■■□□ 2.21
SF3B2-211ENST00000531041 IFT140Q96RY7 1462 aa28.86■■■□□ 2.21
SF3B2-211ENST00000531041 SOGA1O94964 1423 aa28.84■■■□□ 2.21
SF3B2-211ENST00000531041 RAD54L2Q9Y4B4 1467 aa28.8■■■□□ 2.2
SF3B2-211ENST00000531041 WDR97A6NE52 1622 aa28.79■■■□□ 2.2
SF3B2-211ENST00000531041 TRIM41Q8WV44 630 aa28.73■■■□□ 2.19
SF3B2-211ENST00000531041 ABCA10Q8WWZ4 1543 aa28.72■■■□□ 2.19
SF3B2-211ENST00000531041 CHIC1Q5VXU3 224 aa28.7■■■□□ 2.19
SF3B2-211ENST00000531041 ZNF608Q9ULD9 1512 aaPredicted RBP28.68■■■□□ 2.18
SF3B2-211ENST00000531041 EIF4G3O43432 1585 aaKnown RBP28.65■■■□□ 2.18
SF3B2-211ENST00000531041 ABCA5Q8WWZ7 1642 aa28.6■■■□□ 2.17
SF3B2-211ENST00000531041 TDRD9Q8NDG6 1382 aaKnown RBP28.58■■■□□ 2.17
SF3B2-211ENST00000531041 AQRO60306 1485 aaKnown RBP eCLIP28.58■■■□□ 2.173e-6■■■□□ 15.2
SF3B2-211ENST00000531041 PBRM1Q86U86 1689 aa28.53■■■□□ 2.16
SF3B2-211ENST00000531041 GAPVD1Q14C86 1478 aa28.52■■■□□ 2.16
SF3B2-211ENST00000531041 KIF27Q86VH2 1401 aa28.47■■■□□ 2.15
SF3B2-211ENST00000531041 GRIN2BQ13224 1484 aa28.45■■■□□ 2.15
SF3B2-211ENST00000531041 ERICH3Q5RHP9 1530 aa28.4■■■□□ 2.14
SF3B2-211ENST00000531041 RUSC2Q8N2Y8 1516 aa28.36■■■□□ 2.13
SF3B2-211ENST00000531041 MAGI1Q96QZ7 1491 aaPredicted RBP28.35■■■□□ 2.13
SF3B2-211ENST00000531041 SNAPC4Q5SXM2 1469 aa28.33■■■□□ 2.13
SF3B2-211ENST00000531041 IGF1RP08069 1367 aa28.28■■■□□ 2.12
SF3B2-211ENST00000531041 CUL7Q14999 1698 aa28.27■■■□□ 2.12
SF3B2-211ENST00000531041 EEA1Q15075 1411 aa28.27■■■□□ 2.12
SF3B2-211ENST00000531041 ADAMTS12P58397 1594 aa28.26■■■□□ 2.11
SF3B2-211ENST00000531041 CHD1O14646 1710 aa28.25■■■□□ 2.11
SF3B2-211ENST00000531041 SYNJ2O15056 1496 aa28.21■■■□□ 2.11
SF3B2-211ENST00000531041 FHAD1B1AJZ9 1412 aa28.2■■■□□ 2.11
SF3B2-211ENST00000531041 CARMIL1Q5VZK9 1371 aa28.13■■■□□ 2.09
SF3B2-211ENST00000531041 CHMP7Q8WUX9 453 aaPredicted RBP28.12■■■□□ 2.09
SF3B2-211ENST00000531041 CSRNP3Q8WYN3 585 aa28.12■■■□□ 2.09
SF3B2-211ENST00000531041 FBLN2P98095 1184 aa28.1■■■□□ 2.09
SF3B2-211ENST00000531041 GRIN2AQ12879 1464 aa28.1■■■□□ 2.09
SF3B2-211ENST00000531041 FAM9AQ8IZU1 332 aaPredicted RBP28.09■■■□□ 2.09
SF3B2-211ENST00000531041 PRXQ9BXM0 1461 aa28.06■■■□□ 2.08
SF3B2-211ENST00000531041 RAPGEF2Q9Y4G8 1499 aa28.04■■■□□ 2.08
SF3B2-211ENST00000531041 OSCARQ8IYS5 282 aa27.99■■■□□ 2.07
SF3B2-211ENST00000531041 KIF21BO75037 1637 aa27.98■■■□□ 2.07
SF3B2-211ENST00000531041 CEP170Q5SW79 1584 aa27.95■■■□□ 2.07
SF3B2-211ENST00000531041 NUP160Q12769 1436 aa27.95■■■□□ 2.06
SF3B2-211ENST00000531041 CLASP1Q7Z460 1538 aa27.89■■■□□ 2.05
SF3B2-211ENST00000531041 CTTNBP2Q8WZ74 1663 aa27.86■■■□□ 2.05
SF3B2-211ENST00000531041 KIAA0586Q9BVV6 1533 aa27.8■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms