RNA–Protein interactions for RNA: ENST00000530442.5

CAPN1-218, Transcript of calpain 1, humanhuman

TSL 2

Gene CAPN1, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-218ENST00000530442 NISCHQ9Y2I1 1504 aa26.51■■□□□ 1.83
CAPN1-218ENST00000530442 CCDC180Q9P1Z9 1646 aa23.55■■□□□ 1.36
CAPN1-218ENST00000530442 ABCC9O60706 1549 aa22.74■■□□□ 1.23
CAPN1-218ENST00000530442 ZCCHC6Q5VYS8 1495 aaKnown RBP22.17■■□□□ 1.14
CAPN1-218ENST00000530442 NACADO15069 1562 aa22.02■■□□□ 1.12
CAPN1-218ENST00000530442 RB1CC1Q8TDY2 1594 aa21.99■■□□□ 1.11
CAPN1-218ENST00000530442 MYO15BQ96JP2 1530 aa21.96■■□□□ 1.11
CAPN1-218ENST00000530442 DCAF1Q9Y4B6 1507 aa21.96■■□□□ 1.11
CAPN1-218ENST00000530442 DCAF8L2P0C7V8 631 aa21.89■■□□□ 1.09
CAPN1-218ENST00000530442 UNC13AQ9UPW8 1703 aa21.63■■□□□ 1.05
CAPN1-218ENST00000530442 SCRIBQ14160 1630 aa21.49■■□□□ 1.03
CAPN1-218ENST00000530442 BICRAQ9NZM4 1560 aa21.37■■□□□ 1.01
CAPN1-218ENST00000530442 PABPN1Q86U42 306 aaKnown RBP eCLIP21.22■□□□□ 0.99
CAPN1-218ENST00000530442 SHROOM4Q9ULL8 1493 aa21.13■□□□□ 0.97
CAPN1-218ENST00000530442 EIF4G1Q04637 1599 aaKnown RBP20.77■□□□□ 0.92
CAPN1-218ENST00000530442 CC2D2AQ9P2K1 1620 aa20.63■□□□□ 0.89
CAPN1-218ENST00000530442 CECR2Q9BXF3 1484 aa20.62■□□□□ 0.89
CAPN1-218ENST00000530442 DNAJC5BQ9UF47 199 aa20.61■□□□□ 0.89
CAPN1-218ENST00000530442 SMARCA4P51532 1647 aa20.57■□□□□ 0.88
CAPN1-218ENST00000530442 BAZ1AQ9NRL2 1556 aaPredicted RBP20.55■□□□□ 0.88
CAPN1-218ENST00000530442 MROH2BQ7Z745 1585 aa20.45■□□□□ 0.86
CAPN1-218ENST00000530442 PEG3Q9GZU2 1588 aa20.37■□□□□ 0.85
CAPN1-218ENST00000530442 ATAD2BQ9ULI0 1458 aa20.35■□□□□ 0.85
CAPN1-218ENST00000530442 SMARCA2P51531 1590 aa20.34■□□□□ 0.85
CAPN1-218ENST00000530442 NCAPD3P42695 1498 aa20.28■□□□□ 0.84
CAPN1-218ENST00000530442 WIZO95785 1651 aa20.28■□□□□ 0.84
CAPN1-218ENST00000530442 HMGXB3Q12766 1538 aa20.27■□□□□ 0.83
CAPN1-218ENST00000530442 RSF1Q96T23 1441 aaPredicted RBP20.26■□□□□ 0.83
CAPN1-218ENST00000530442 BAZ1BQ9UIG0 1483 aaKnown RBP20.19■□□□□ 0.82
CAPN1-218ENST00000530442 TOP2AP11388 1531 aaKnown RBP20.06■□□□□ 0.8
CAPN1-218ENST00000530442 SUPT5HO00267 1087 aaKnown RBP19.81■□□□□ 0.76
CAPN1-218ENST00000530442 NESP48681 1621 aa19.77■□□□□ 0.76
CAPN1-218ENST00000530442 CCDC88BA6NC98 1476 aa19.77■□□□□ 0.76
CAPN1-218ENST00000530442 LAMC3Q9Y6N6 1575 aa19.76■□□□□ 0.75
CAPN1-218ENST00000530442 CADPSQ9ULU8 1353 aa19.68■□□□□ 0.74
CAPN1-218ENST00000530442 PRDM2Q13029 1718 aa19.66■□□□□ 0.74
CAPN1-218ENST00000530442 CFTRP13569 1480 aa19.65■□□□□ 0.74
CAPN1-218ENST00000530442 KIF21AQ7Z4S6 1674 aa19.62■□□□□ 0.73
CAPN1-218ENST00000530442 ERCC6Q03468 1493 aa19.56■□□□□ 0.72
CAPN1-218ENST00000530442 PDS5BQ9NTI5 1447 aa19.54■□□□□ 0.72
CAPN1-218ENST00000530442 THOC2Q8NI27 1593 aaKnown RBP19.5■□□□□ 0.71
CAPN1-218ENST00000530442 FANCD2Q9BXW9 1451 aa19.49■□□□□ 0.71
CAPN1-218ENST00000530442 CEP164Q9UPV0 1460 aa19.46■□□□□ 0.71
CAPN1-218ENST00000530442 MRC2Q9UBG0 1479 aa19.39■□□□□ 0.69
CAPN1-218ENST00000530442 WDR62O43379 1518 aa19.35■□□□□ 0.69
CAPN1-218ENST00000530442 URB2Q14146 1524 aaKnown RBP19.31■□□□□ 0.68
CAPN1-218ENST00000530442 CUX2O14529 1486 aa19.3■□□□□ 0.68
CAPN1-218ENST00000530442 DNMBPQ6XZF7 1577 aa19.25■□□□□ 0.67
CAPN1-218ENST00000530442 TOPBP1Q92547 1522 aa19.22■□□□□ 0.67
CAPN1-218ENST00000530442 CUX1P39880 1505 aa19.18■□□□□ 0.66
CAPN1-218ENST00000530442 ABCC8Q09428 1581 aa19.18■□□□□ 0.66
CAPN1-218ENST00000530442 BIVM-ERCC5R4GMW8 1640 aa19.12■□□□□ 0.65
CAPN1-218ENST00000530442 SYNJ1O43426 1573 aa19.11■□□□□ 0.65
CAPN1-218ENST00000530442 TOP2BQ02880 1626 aa19.09■□□□□ 0.65
CAPN1-218ENST00000530442 POLA1P09884 1462 aaPredicted RBP19.09■□□□□ 0.65
CAPN1-218ENST00000530442 WRNQ14191 1432 aaPredicted RBP eCLIP19.08■□□□□ 0.65
CAPN1-218ENST00000530442 FGD5Q6ZNL6 1462 aa19.07■□□□□ 0.64
CAPN1-218ENST00000530442 TARBP1Q13395 1621 aaKnown RBP19.03■□□□□ 0.64
CAPN1-218ENST00000530442 IFT140Q96RY7 1462 aa19.03■□□□□ 0.64
CAPN1-218ENST00000530442 WDR97A6NE52 1622 aa19■□□□□ 0.63
CAPN1-218ENST00000530442 RAD54L2Q9Y4B4 1467 aa18.97■□□□□ 0.63
CAPN1-218ENST00000530442 EIF4G3O43432 1585 aaKnown RBP18.95■□□□□ 0.62
CAPN1-218ENST00000530442 ZNF608Q9ULD9 1512 aaPredicted RBP18.95■□□□□ 0.62
CAPN1-218ENST00000530442 SOGA1O94964 1423 aa18.93■□□□□ 0.62
CAPN1-218ENST00000530442 ABCA10Q8WWZ4 1543 aa18.89■□□□□ 0.61
CAPN1-218ENST00000530442 ABCA5Q8WWZ7 1642 aa18.86■□□□□ 0.61
CAPN1-218ENST00000530442 AQRO60306 1485 aaKnown RBP eCLIP18.83■□□□□ 0.64e-7■■■■□ 19.3
CAPN1-218ENST00000530442 PBRM1Q86U86 1689 aa18.82■□□□□ 0.6
CAPN1-218ENST00000530442 TDRD9Q8NDG6 1382 aaKnown RBP18.81■□□□□ 0.6
CAPN1-218ENST00000530442 GAPVD1Q14C86 1478 aa18.76■□□□□ 0.59
CAPN1-218ENST00000530442 GRIN2BQ13224 1484 aa18.72■□□□□ 0.59
CAPN1-218ENST00000530442 SNAPC4Q5SXM2 1469 aa18.71■□□□□ 0.59
CAPN1-218ENST00000530442 TRIM41Q8WV44 630 aa18.69■□□□□ 0.58
CAPN1-218ENST00000530442 CHD1O14646 1710 aa18.68■□□□□ 0.58
CAPN1-218ENST00000530442 MAGI1Q96QZ7 1491 aaPredicted RBP18.67■□□□□ 0.58
CAPN1-218ENST00000530442 ERICH3Q5RHP9 1530 aa18.67■□□□□ 0.58
CAPN1-218ENST00000530442 ADAMTS12P58397 1594 aa18.66■□□□□ 0.58
CAPN1-218ENST00000530442 KIF27Q86VH2 1401 aa18.65■□□□□ 0.58
CAPN1-218ENST00000530442 CHIC1Q5VXU3 224 aa18.63■□□□□ 0.57
CAPN1-218ENST00000530442 RUSC2Q8N2Y8 1516 aa18.59■□□□□ 0.57
CAPN1-218ENST00000530442 SYNJ2O15056 1496 aa18.59■□□□□ 0.57
CAPN1-218ENST00000530442 CUL7Q14999 1698 aa18.59■□□□□ 0.57
CAPN1-218ENST00000530442 FHAD1B1AJZ9 1412 aa18.54■□□□□ 0.56
CAPN1-218ENST00000530442 IGF1RP08069 1367 aa18.53■□□□□ 0.56
CAPN1-218ENST00000530442 GRIN2AQ12879 1464 aa18.51■□□□□ 0.55
CAPN1-218ENST00000530442 FBLN2P98095 1184 aa18.47■□□□□ 0.55
CAPN1-218ENST00000530442 CHMP7Q8WUX9 453 aaPredicted RBP18.46■□□□□ 0.55
CAPN1-218ENST00000530442 CEP170Q5SW79 1584 aa18.45■□□□□ 0.54
CAPN1-218ENST00000530442 CLASP1Q7Z460 1538 aa18.44■□□□□ 0.54
CAPN1-218ENST00000530442 EEA1Q15075 1411 aa18.44■□□□□ 0.54
CAPN1-218ENST00000530442 CARMIL1Q5VZK9 1371 aa18.42■□□□□ 0.54
CAPN1-218ENST00000530442 OSCARQ8IYS5 282 aa18.42■□□□□ 0.54
CAPN1-218ENST00000530442 NUP160Q12769 1436 aa18.41■□□□□ 0.54
CAPN1-218ENST00000530442 PRXQ9BXM0 1461 aa18.39■□□□□ 0.53
CAPN1-218ENST00000530442 RAPGEF2Q9Y4G8 1499 aa18.38■□□□□ 0.53
CAPN1-218ENST00000530442 DNAJC5Q9H3Z4 198 aa18.35■□□□□ 0.53
CAPN1-218ENST00000530442 KIF21BO75037 1637 aa18.32■□□□□ 0.52
CAPN1-218ENST00000530442 SHROOM2Q13796 1616 aa18.31■□□□□ 0.52
CAPN1-218ENST00000530442 FAM9AQ8IZU1 332 aaPredicted RBP18.31■□□□□ 0.52
CAPN1-218ENST00000530442 CSRNP3Q8WYN3 585 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms