RNA–Protein interactions for RNA: ENST00000530378.5

SOX6-213, Transcript of SRY-box 6, humanhuman

TSL 2

Gene SOX6, Length 1,818 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX6-213ENST00000530378 NISCHQ9Y2I1 1504 aa24.95■■□□□ 1.58
SOX6-213ENST00000530378 CCDC180Q9P1Z9 1646 aa21.95■■□□□ 1.1
SOX6-213ENST00000530378 AEBP2Q6ZN18 517 aaPredicted RBP21.15■□□□□ 0.98
SOX6-213ENST00000530378 ABCC9O60706 1549 aa21.15■□□□□ 0.98
SOX6-213ENST00000530378 ZCCHC6Q5VYS8 1495 aaKnown RBP20.9■□□□□ 0.94
SOX6-213ENST00000530378 DCAF8L2P0C7V8 631 aa20.79■□□□□ 0.92
SOX6-213ENST00000530378 DCAF1Q9Y4B6 1507 aa20.55■□□□□ 0.88
SOX6-213ENST00000530378 NACADO15069 1562 aa20.48■□□□□ 0.87
SOX6-213ENST00000530378 RB1CC1Q8TDY2 1594 aa20.44■□□□□ 0.86
SOX6-213ENST00000530378 MYO15BQ96JP2 1530 aa20.42■□□□□ 0.86
SOX6-213ENST00000530378 CHIC1Q5VXU3 224 aa20.23■□□□□ 0.83
SOX6-213ENST00000530378 SCRIBQ14160 1630 aa20.23■□□□□ 0.83
SOX6-213ENST00000530378 SHROOM4Q9ULL8 1493 aa20.22■□□□□ 0.83
SOX6-213ENST00000530378 UNC13AQ9UPW8 1703 aa20.12■□□□□ 0.81
SOX6-213ENST00000530378 BICRAQ9NZM4 1560 aa19.85■□□□□ 0.77
SOX6-213ENST00000530378 PABPN1Q86U42 306 aaKnown RBP eCLIP19.85■□□□□ 0.77
SOX6-213ENST00000530378 DNAJC5BQ9UF47 199 aa19.8■□□□□ 0.76
SOX6-213ENST00000530378 CECR2Q9BXF3 1484 aa19.46■□□□□ 0.71
SOX6-213ENST00000530378 SMARCA4P51532 1647 aa19.31■□□□□ 0.68
SOX6-213ENST00000530378 MROH2BQ7Z745 1585 aa19.3■□□□□ 0.68
SOX6-213ENST00000530378 BAZ1AQ9NRL2 1556 aaPredicted RBP19.29■□□□□ 0.68
SOX6-213ENST00000530378 EIF4G1Q04637 1599 aaKnown RBP19.29■□□□□ 0.68
SOX6-213ENST00000530378 SUPT5HO00267 1087 aaKnown RBP19.22■□□□□ 0.67
SOX6-213ENST00000530378 RSF1Q96T23 1441 aaPredicted RBP19.2■□□□□ 0.66
SOX6-213ENST00000530378 WIZO95785 1651 aa19.17■□□□□ 0.66
SOX6-213ENST00000530378 CC2D2AQ9P2K1 1620 aa19.12■□□□□ 0.65
SOX6-213ENST00000530378 ATAD2BQ9ULI0 1458 aa19.03■□□□□ 0.64
SOX6-213ENST00000530378 SMARCA2P51531 1590 aa19.01■□□□□ 0.63
SOX6-213ENST00000530378 PEG3Q9GZU2 1588 aa19.01■□□□□ 0.63
SOX6-213ENST00000530378 BAZ1BQ9UIG0 1483 aaKnown RBP18.94■□□□□ 0.62
SOX6-213ENST00000530378 TOP2AP11388 1531 aaKnown RBP18.9■□□□□ 0.62
SOX6-213ENST00000530378 NCAPD3P42695 1498 aa18.88■□□□□ 0.61
SOX6-213ENST00000530378 HMGXB3Q12766 1538 aa18.87■□□□□ 0.61
SOX6-213ENST00000530378 DNAJC5Q9H3Z4 198 aa18.77■□□□□ 0.59
SOX6-213ENST00000530378 CCDC88BA6NC98 1476 aa18.69■□□□□ 0.58
SOX6-213ENST00000530378 NESP48681 1621 aa18.46■□□□□ 0.55
SOX6-213ENST00000530378 CADPSQ9ULU8 1353 aa18.39■□□□□ 0.53
SOX6-213ENST00000530378 CFTRP13569 1480 aa18.38■□□□□ 0.53
SOX6-213ENST00000530378 PRDM2Q13029 1718 aa18.38■□□□□ 0.53
SOX6-213ENST00000530378 LAMC3Q9Y6N6 1575 aa18.35■□□□□ 0.53
SOX6-213ENST00000530378 KIF21AQ7Z4S6 1674 aa18.27■□□□□ 0.52
SOX6-213ENST00000530378 ABCC8Q09428 1581 aa18.27■□□□□ 0.51
SOX6-213ENST00000530378 FANCD2Q9BXW9 1451 aa18.24■□□□□ 0.51
SOX6-213ENST00000530378 PDS5BQ9NTI5 1447 aa18.19■□□□□ 0.5
SOX6-213ENST00000530378 CEP164Q9UPV0 1460 aa18.17■□□□□ 0.5
SOX6-213ENST00000530378 ERCC6Q03468 1493 aa18.16■□□□□ 0.5
SOX6-213ENST00000530378 SYNJ1O43426 1573 aa18.11■□□□□ 0.49
SOX6-213ENST00000530378 WRNQ14191 1432 aaPredicted RBP eCLIP18.1■□□□□ 0.49
SOX6-213ENST00000530378 CUX1P39880 1505 aa18.08■□□□□ 0.48
SOX6-213ENST00000530378 URB2Q14146 1524 aaKnown RBP18.05■□□□□ 0.48
SOX6-213ENST00000530378 TRIM41Q8WV44 630 aa18.03■□□□□ 0.48
SOX6-213ENST00000530378 MRC2Q9UBG0 1479 aa18.03■□□□□ 0.48
SOX6-213ENST00000530378 THOC2Q8NI27 1593 aaKnown RBP18.02■□□□□ 0.48
SOX6-213ENST00000530378 BIVM-ERCC5R4GMW8 1640 aa18.02■□□□□ 0.47
SOX6-213ENST00000530378 DNMBPQ6XZF7 1577 aa18.01■□□□□ 0.47
SOX6-213ENST00000530378 TOP2BQ02880 1626 aa18.01■□□□□ 0.47
SOX6-213ENST00000530378 TOPBP1Q92547 1522 aa18■□□□□ 0.47
SOX6-213ENST00000530378 SENP3Q9H4L4 574 aaPredicted RBP17.96■□□□□ 0.47
SOX6-213ENST00000530378 CUX2O14529 1486 aa17.96■□□□□ 0.47
SOX6-213ENST00000530378 WDR62O43379 1518 aa17.94■□□□□ 0.46
SOX6-213ENST00000530378 FGD5Q6ZNL6 1462 aa17.94■□□□□ 0.46
SOX6-213ENST00000530378 POLA1P09884 1462 aaPredicted RBP17.89■□□□□ 0.46
SOX6-213ENST00000530378 RAD54L2Q9Y4B4 1467 aa17.86■□□□□ 0.45
SOX6-213ENST00000530378 PHF23Q9BUL5 403 aaPredicted RBP17.84■□□□□ 0.45
SOX6-213ENST00000530378 SOGA1O94964 1423 aa17.79■□□□□ 0.44
SOX6-213ENST00000530378 FAM9AQ8IZU1 332 aaPredicted RBP17.79■□□□□ 0.44
SOX6-213ENST00000530378 WDR97A6NE52 1622 aa17.78■□□□□ 0.44
SOX6-213ENST00000530378 TARBP1Q13395 1621 aaKnown RBP17.78■□□□□ 0.44
SOX6-213ENST00000530378 RUSC2Q8N2Y8 1516 aa17.77■□□□□ 0.43
SOX6-213ENST00000530378 IFT140Q96RY7 1462 aa17.72■□□□□ 0.43
SOX6-213ENST00000530378 ABCA10Q8WWZ4 1543 aa17.72■□□□□ 0.43
SOX6-213ENST00000530378 ZNF608Q9ULD9 1512 aaPredicted RBP17.7■□□□□ 0.42
SOX6-213ENST00000530378 TDRD9Q8NDG6 1382 aaKnown RBP17.69■□□□□ 0.42
SOX6-213ENST00000530378 EIF4G3O43432 1585 aaKnown RBP17.66■□□□□ 0.42
SOX6-213ENST00000530378 ABCA5Q8WWZ7 1642 aa17.66■□□□□ 0.42
SOX6-213ENST00000530378 KIF27Q86VH2 1401 aa17.66■□□□□ 0.42
SOX6-213ENST00000530378 AQRO60306 1485 aaKnown RBP eCLIP17.65■□□□□ 0.42
SOX6-213ENST00000530378 PBRM1Q86U86 1689 aa17.63■□□□□ 0.41
SOX6-213ENST00000530378 EHMT2Q96KQ7 1210 aa17.63■□□□□ 0.41
SOX6-213ENST00000530378 GAPVD1Q14C86 1478 aa17.61■□□□□ 0.41
SOX6-213ENST00000530378 EEA1Q15075 1411 aa17.57■□□□□ 0.4
SOX6-213ENST00000530378 CSRNP3Q8WYN3 585 aa17.54■□□□□ 0.4
SOX6-213ENST00000530378 IGF1RP08069 1367 aa17.52■□□□□ 0.39
SOX6-213ENST00000530378 GRIN2BQ13224 1484 aa17.51■□□□□ 0.39
SOX6-213ENST00000530378 ERICH3Q5RHP9 1530 aa17.51■□□□□ 0.39
SOX6-213ENST00000530378 SNAPC4Q5SXM2 1469 aa17.5■□□□□ 0.39
SOX6-213ENST00000530378 CUL7Q14999 1698 aa17.48■□□□□ 0.39
SOX6-213ENST00000530378 ADAMTS12P58397 1594 aa17.47■□□□□ 0.39
SOX6-213ENST00000530378 LOC105371045A0A1W2PR82 267 aa17.47■□□□□ 0.39
SOX6-213ENST00000530378 KIF21BO75037 1637 aa17.45■□□□□ 0.38
SOX6-213ENST00000530378 RAPGEF2Q9Y4G8 1499 aa17.45■□□□□ 0.38
SOX6-213ENST00000530378 CARMIL1Q5VZK9 1371 aa17.44■□□□□ 0.38
SOX6-213ENST00000530378 PRXQ9BXM0 1461 aa17.43■□□□□ 0.38
SOX6-213ENST00000530378 MAGI1Q96QZ7 1491 aaPredicted RBP17.4■□□□□ 0.38
SOX6-213ENST00000530378 GOLGA3Q08378 1498 aa17.39■□□□□ 0.37
SOX6-213ENST00000530378 FBLN2P98095 1184 aa17.39■□□□□ 0.37
SOX6-213ENST00000530378 CHD1O14646 1710 aa17.39■□□□□ 0.37
SOX6-213ENST00000530378 FHAD1B1AJZ9 1412 aa17.38■□□□□ 0.37
SOX6-213ENST00000530378 SYNJ2O15056 1496 aa17.35■□□□□ 0.37
SOX6-213ENST00000530378 UBTFP17480 764 aaKnown RBP17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms