RNA–Protein interactions for RNA: ENST00000529063.1

NUP98-215, Transcript of nucleoporin 98, humanhuman

TSL 3

Gene NUP98, Length 544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98-215ENST00000529063 CHIC1Q5VXU3 224 aa15.67■□□□□ 0.1
NUP98-215ENST00000529063 NISCHQ9Y2I1 1504 aa15.46■□□□□ 0.07
NUP98-215ENST00000529063 AEBP2Q6ZN18 517 aaPredicted RBP15.45■□□□□ 0.06
NUP98-215ENST00000529063 ABCC9O60706 1549 aa14.01□□□□□ -0.17
NUP98-215ENST00000529063 CCDC180Q9P1Z9 1646 aa13.97□□□□□ -0.17
NUP98-215ENST00000529063 PHF23Q9BUL5 403 aaPredicted RBP13.85□□□□□ -0.19
NUP98-215ENST00000529063 RB1CC1Q8TDY2 1594 aa13.29□□□□□ -0.28
NUP98-215ENST00000529063 DNAJC5BQ9UF47 199 aa13.26□□□□□ -0.29
NUP98-215ENST00000529063 NACADO15069 1562 aa13.17□□□□□ -0.3
NUP98-215ENST00000529063 UNC13AQ9UPW8 1703 aa13.1□□□□□ -0.31
NUP98-215ENST00000529063 SENP3Q9H4L4 574 aaPredicted RBP13.02□□□□□ -0.33
NUP98-215ENST00000529063 PLPPR3Q6T4P5 718 aa13.01□□□□□ -0.33
NUP98-215ENST00000529063 BICRAQ9NZM4 1560 aa12.99□□□□□ -0.33
NUP98-215ENST00000529063 PABPN1Q86U42 306 aaKnown RBP eCLIP12.98□□□□□ -0.33
NUP98-215ENST00000529063 MYO15BQ96JP2 1530 aa12.97□□□□□ -0.33
NUP98-215ENST00000529063 DCAF8L2P0C7V8 631 aa12.93□□□□□ -0.34
NUP98-215ENST00000529063 ZCCHC6Q5VYS8 1495 aaKnown RBP12.81□□□□□ -0.36
NUP98-215ENST00000529063 DCAF1Q9Y4B6 1507 aa12.77□□□□□ -0.37
NUP98-215ENST00000529063 SHROOM4Q9ULL8 1493 aa12.74□□□□□ -0.37
NUP98-215ENST00000529063 SCRIBQ14160 1630 aa12.7□□□□□ -0.38
NUP98-215ENST00000529063 CC2D2AQ9P2K1 1620 aa12.69□□□□□ -0.38
NUP98-215ENST00000529063 EIF4G1Q04637 1599 aaKnown RBP12.64□□□□□ -0.39
NUP98-215ENST00000529063 CECR2Q9BXF3 1484 aa12.63□□□□□ -0.39
NUP98-215ENST00000529063 DNAJC5Q9H3Z4 198 aa12.2□□□□□ -0.46
NUP98-215ENST00000529063 ADRA2BP18089 450 aa12.16□□□□□ -0.46
NUP98-215ENST00000529063 NCAPD3P42695 1498 aa12.15□□□□□ -0.46
NUP98-215ENST00000529063 CUX2O14529 1486 aa12.13□□□□□ -0.47
NUP98-215ENST00000529063 ATAD2BQ9ULI0 1458 aa12.11□□□□□ -0.47
NUP98-215ENST00000529063 SMARCA4P51532 1647 aa12.11□□□□□ -0.47
NUP98-215ENST00000529063 HMGXB3Q12766 1538 aa12.1□□□□□ -0.47
NUP98-215ENST00000529063 ERCC6Q03468 1493 aa12.07□□□□□ -0.48
NUP98-215ENST00000529063 SMARCA2P51531 1590 aa12.06□□□□□ -0.48
NUP98-215ENST00000529063 NESP48681 1621 aa12.04□□□□□ -0.48
NUP98-215ENST00000529063 PPP6R1Q9UPN7 881 aa12.02□□□□□ -0.49
NUP98-215ENST00000529063 FOXD1Q16676 465 aa12.01□□□□□ -0.49
NUP98-215ENST00000529063 PEG3Q9GZU2 1588 aa12.01□□□□□ -0.49
NUP98-215ENST00000529063 BAZ1AQ9NRL2 1556 aaPredicted RBP12□□□□□ -0.49
NUP98-215ENST00000529063 THOC2Q8NI27 1593 aaKnown RBP11.99□□□□□ -0.49
NUP98-215ENST00000529063 BAZ1BQ9UIG0 1483 aaKnown RBP11.97□□□□□ -0.49
NUP98-215ENST00000529063 KCNA4P22459 653 aa11.95□□□□□ -0.5
NUP98-215ENST00000529063 KIF21AQ7Z4S6 1674 aa11.93□□□□□ -0.5
NUP98-215ENST00000529063 MROH2BQ7Z745 1585 aa11.92□□□□□ -0.5
NUP98-215ENST00000529063 LAMC3Q9Y6N6 1575 aa11.92□□□□□ -0.5
NUP98-215ENST00000529063 EHMT2Q96KQ7 1210 aa11.89□□□□□ -0.51
NUP98-215ENST00000529063 PDS5BQ9NTI5 1447 aa11.79□□□□□ -0.52
NUP98-215ENST00000529063 WIZO95785 1651 aa11.79□□□□□ -0.52
NUP98-215ENST00000529063 WDR62O43379 1518 aa11.76□□□□□ -0.53
NUP98-215ENST00000529063 CADPSQ9ULU8 1353 aa11.75□□□□□ -0.53
NUP98-215ENST00000529063 MRC2Q9UBG0 1479 aa11.75□□□□□ -0.53
NUP98-215ENST00000529063 CEP164Q9UPV0 1460 aa11.67□□□□□ -0.54
NUP98-215ENST00000529063 FANCD2Q9BXW9 1451 aa11.64□□□□□ -0.55
NUP98-215ENST00000529063 CFTRP13569 1480 aa11.63□□□□□ -0.55
NUP98-215ENST00000529063 TOP2AP11388 1531 aaKnown RBP11.61□□□□□ -0.55
NUP98-215ENST00000529063 RSF1Q96T23 1441 aaPredicted RBP11.6□□□□□ -0.55
NUP98-215ENST00000529063 URB2Q14146 1524 aaKnown RBP11.6□□□□□ -0.55
NUP98-215ENST00000529063 PRDM2Q13029 1718 aa11.59□□□□□ -0.55
NUP98-215ENST00000529063 TRIM41Q8WV44 630 aa11.58□□□□□ -0.56
NUP98-215ENST00000529063 PPP4R3CPQ6ZMV5 832 aa11.54□□□□□ -0.56
NUP98-215ENST00000529063 PIAS4Q8N2W9 510 aaPredicted RBP11.5□□□□□ -0.57
NUP98-215ENST00000529063 SLC4A1APQ9BWU0 796 aaKnown RBP11.5□□□□□ -0.57
NUP98-215ENST00000529063 RIMBP3CA6NJZ7 1639 aa11.46□□□□□ -0.57
NUP98-215ENST00000529063 RIMBP3BA6NNM3 1639 aa11.46□□□□□ -0.57
NUP98-215ENST00000529063 RIMBP3Q9UFD9 1639 aa11.46□□□□□ -0.57
NUP98-215ENST00000529063 ZNF608Q9ULD9 1512 aaPredicted RBP11.46□□□□□ -0.57
NUP98-215ENST00000529063 CCDC88BA6NC98 1476 aa11.46□□□□□ -0.57
NUP98-215ENST00000529063 OSCARQ8IYS5 282 aa11.45□□□□□ -0.58
NUP98-215ENST00000529063 CSRNP3Q8WYN3 585 aa11.43□□□□□ -0.58
NUP98-215ENST00000529063 TOPBP1Q92547 1522 aa11.43□□□□□ -0.58
NUP98-215ENST00000529063 IFT140Q96RY7 1462 aa11.43□□□□□ -0.58
NUP98-215ENST00000529063 EIF4G3O43432 1585 aaKnown RBP11.42□□□□□ -0.58
NUP98-215ENST00000529063 NCBP3Q53F19 620 aaKnown RBP11.42□□□□□ -0.58
NUP98-215ENST00000529063 DNMBPQ6XZF7 1577 aa11.39□□□□□ -0.59
NUP98-215ENST00000529063 ARHGEF11O15085 1522 aa11.39□□□□□ -0.59
NUP98-215ENST00000529063 TARBP1Q13395 1621 aaKnown RBP11.38□□□□□ -0.59
NUP98-215ENST00000529063 CHD1O14646 1710 aa11.38□□□□□ -0.59
NUP98-215ENST00000529063 ABCC8Q09428 1581 aa11.33□□□□□ -0.6
NUP98-215ENST00000529063 POLA1P09884 1462 aaPredicted RBP11.32□□□□□ -0.6
NUP98-215ENST00000529063 AQRO60306 1485 aaKnown RBP eCLIP11.31□□□□□ -0.61e-6■■■■■ 33.5
NUP98-215ENST00000529063 ARAP1Q96P48 1450 aa11.29□□□□□ -0.6
NUP98-215ENST00000529063 RAD54L2Q9Y4B4 1467 aa11.26□□□□□ -0.61
NUP98-215ENST00000529063 NPM3O75607 178 aaKnown RBP11.25□□□□□ -0.61
NUP98-215ENST00000529063 CLASP1Q7Z460 1538 aa11.23□□□□□ -0.61
NUP98-215ENST00000529063 WDR97A6NE52 1622 aa11.23□□□□□ -0.61
NUP98-215ENST00000529063 FGD5Q6ZNL6 1462 aa11.22□□□□□ -0.61
NUP98-215ENST00000529063 CUX1P39880 1505 aa11.21□□□□□ -0.61
NUP98-215ENST00000529063 SNAPC4Q5SXM2 1469 aa11.21□□□□□ -0.61
NUP98-215ENST00000529063 TDRD9Q8NDG6 1382 aaKnown RBP11.2□□□□□ -0.62
NUP98-215ENST00000529063 CYB5RLQ6IPT4 315 aa11.2□□□□□ -0.62
NUP98-215ENST00000529063 SOGA1O94964 1423 aa11.19□□□□□ -0.62
NUP98-215ENST00000529063 PBRM1Q86U86 1689 aa11.17□□□□□ -0.62
NUP98-215ENST00000529063 FBLN2P98095 1184 aa11.16□□□□□ -0.62
NUP98-215ENST00000529063 MAGI1Q96QZ7 1491 aaPredicted RBP11.16□□□□□ -0.62
NUP98-215ENST00000529063 SYNJ1O43426 1573 aa11.16□□□□□ -0.62
NUP98-215ENST00000529063 GRIN2BQ13224 1484 aa11.13□□□□□ -0.63
NUP98-215ENST00000529063 ABCA5Q8WWZ7 1642 aa11.13□□□□□ -0.63
NUP98-215ENST00000529063 SYNJ2O15056 1496 aa11.12□□□□□ -0.63
NUP98-215ENST00000529063 TRHP20396 242 aaPredicted RBP11.09□□□□□ -0.63
NUP98-215ENST00000529063 ABCA10Q8WWZ4 1543 aa11.09□□□□□ -0.63
NUP98-215ENST00000529063 GAPVD1Q14C86 1478 aa11.08□□□□□ -0.64
NUP98-215ENST00000529063 CNKSR2Q8WXI2 1034 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms