RNA–Protein interactions for RNA: ENST00000529058.1

TRIM3-208, Transcript of tripartite motif containing 3, humanhuman

TSL 3

Gene TRIM3, Length 723 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-208ENST00000529058 NISCHQ9Y2I1 1504 aa36.29■■■■□ 3.4
TRIM3-208ENST00000529058 ABCC9O60706 1549 aa33.67■■■□□ 2.98
TRIM3-208ENST00000529058 CCDC180Q9P1Z9 1646 aa32.95■■■□□ 2.86
TRIM3-208ENST00000529058 DNAJC5BQ9UF47 199 aa32.26■■■□□ 2.75
TRIM3-208ENST00000529058 RB1CC1Q8TDY2 1594 aa31.73■■■□□ 2.67
TRIM3-208ENST00000529058 NACADO15069 1562 aa31.31■■■□□ 2.6
TRIM3-208ENST00000529058 PABPN1Q86U42 306 aaKnown RBP eCLIP31.19■■■□□ 2.58
TRIM3-208ENST00000529058 UNC13AQ9UPW8 1703 aa31.06■■■□□ 2.56
TRIM3-208ENST00000529058 DCAF8L2P0C7V8 631 aa30.94■■■□□ 2.54
TRIM3-208ENST00000529058 BICRAQ9NZM4 1560 aa30.83■■■□□ 2.53
TRIM3-208ENST00000529058 MYO15BQ96JP2 1530 aa30.62■■■□□ 2.49
TRIM3-208ENST00000529058 CECR2Q9BXF3 1484 aa30.42■■■□□ 2.46
TRIM3-208ENST00000529058 CC2D2AQ9P2K1 1620 aa30.4■■■□□ 2.46
TRIM3-208ENST00000529058 SHROOM4Q9ULL8 1493 aa30.33■■■□□ 2.45
TRIM3-208ENST00000529058 DNAJC5Q9H3Z4 198 aa30.22■■■□□ 2.43
TRIM3-208ENST00000529058 EIF4G1Q04637 1599 aaKnown RBP30.14■■■□□ 2.42
TRIM3-208ENST00000529058 SCRIBQ14160 1630 aa29.94■■■□□ 2.38
TRIM3-208ENST00000529058 DCAF1Q9Y4B6 1507 aa29.93■■■□□ 2.38
TRIM3-208ENST00000529058 ZCCHC6Q5VYS8 1495 aaKnown RBP29.91■■■□□ 2.38
TRIM3-208ENST00000529058 CUX2O14529 1486 aa29.36■■■□□ 2.29
TRIM3-208ENST00000529058 ERCC6Q03468 1493 aa29.13■■■□□ 2.25
TRIM3-208ENST00000529058 NCAPD3P42695 1498 aa28.9■■■□□ 2.22
TRIM3-208ENST00000529058 NESP48681 1621 aa28.7■■■□□ 2.19
TRIM3-208ENST00000529058 ATAD2BQ9ULI0 1458 aa28.7■■■□□ 2.18
TRIM3-208ENST00000529058 HMGXB3Q12766 1538 aa28.64■■■□□ 2.17
TRIM3-208ENST00000529058 THOC2Q8NI27 1593 aaKnown RBP28.6■■■□□ 2.17
TRIM3-208ENST00000529058 SMARCA2P51531 1590 aa28.59■■■□□ 2.17
TRIM3-208ENST00000529058 TRIM41Q8WV44 630 aa28.56■■■□□ 2.16
TRIM3-208ENST00000529058 SMARCA4P51532 1647 aa28.5■■■□□ 2.15
TRIM3-208ENST00000529058 LAMC3Q9Y6N6 1575 aa28.4■■■□□ 2.14
TRIM3-208ENST00000529058 BAZ1BQ9UIG0 1483 aaKnown RBP28.39■■■□□ 2.13
TRIM3-208ENST00000529058 KIF21AQ7Z4S6 1674 aa28.35■■■□□ 2.13
TRIM3-208ENST00000529058 PDS5BQ9NTI5 1447 aa28.24■■■□□ 2.11
TRIM3-208ENST00000529058 BAZ1AQ9NRL2 1556 aaPredicted RBP28.23■■■□□ 2.11
TRIM3-208ENST00000529058 PEG3Q9GZU2 1588 aa28.22■■■□□ 2.11
TRIM3-208ENST00000529058 MRC2Q9UBG0 1479 aa28.04■■■□□ 2.08
TRIM3-208ENST00000529058 WDR62O43379 1518 aa28.02■■■□□ 2.08
TRIM3-208ENST00000529058 CADPSQ9ULU8 1353 aa27.98■■■□□ 2.07
TRIM3-208ENST00000529058 MROH2BQ7Z745 1585 aa27.94■■■□□ 2.06
TRIM3-208ENST00000529058 OSCARQ8IYS5 282 aa27.87■■■□□ 2.05
TRIM3-208ENST00000529058 CEP164Q9UPV0 1460 aa27.78■■■□□ 2.04
TRIM3-208ENST00000529058 FANCD2Q9BXW9 1451 aa27.67■■■□□ 2.02
TRIM3-208ENST00000529058 RIMBP3CA6NJZ7 1639 aa27.63■■■□□ 2.01
TRIM3-208ENST00000529058 RIMBP3BA6NNM3 1639 aa27.63■■■□□ 2.01
TRIM3-208ENST00000529058 RIMBP3Q9UFD9 1639 aa27.63■■■□□ 2.01
TRIM3-208ENST00000529058 WIZO95785 1651 aa27.6■■■□□ 2.01
TRIM3-208ENST00000529058 CFTRP13569 1480 aa27.5■■□□□ 1.99
TRIM3-208ENST00000529058 URB2Q14146 1524 aaKnown RBP27.49■■□□□ 1.99
TRIM3-208ENST00000529058 ARHGEF11O15085 1522 aa27.45■■□□□ 1.98
TRIM3-208ENST00000529058 ZNF608Q9ULD9 1512 aaPredicted RBP27.28■■□□□ 1.96
TRIM3-208ENST00000529058 CYB5RLQ6IPT4 315 aa27.26■■□□□ 1.95
TRIM3-208ENST00000529058 IFT140Q96RY7 1462 aa27.25■■□□□ 1.95
TRIM3-208ENST00000529058 PRDM2Q13029 1718 aa27.24■■□□□ 1.95
TRIM3-208ENST00000529058 TRHP20396 242 aaPredicted RBP27.22■■□□□ 1.95
TRIM3-208ENST00000529058 TOP2AP11388 1531 aaKnown RBP27.18■■□□□ 1.94
TRIM3-208ENST00000529058 EIF4G3O43432 1585 aaKnown RBP27.11■■□□□ 1.93
TRIM3-208ENST00000529058 ARAP1Q96P48 1450 aa27.11■■□□□ 1.93
TRIM3-208ENST00000529058 CHD1O14646 1710 aa27.09■■□□□ 1.93
TRIM3-208ENST00000529058 RSF1Q96T23 1441 aaPredicted RBP27.07■■□□□ 1.92
TRIM3-208ENST00000529058 TOPBP1Q92547 1522 aa27.06■■□□□ 1.92
TRIM3-208ENST00000529058 AEBP2Q6ZN18 517 aaPredicted RBP27.02■■□□□ 1.92
TRIM3-208ENST00000529058 ABCC8Q09428 1581 aa26.96■■□□□ 1.91
TRIM3-208ENST00000529058 AQRO60306 1485 aaKnown RBP eCLIP26.93■■□□□ 1.9
TRIM3-208ENST00000529058 DNMBPQ6XZF7 1577 aa26.91■■□□□ 1.9
TRIM3-208ENST00000529058 FBLN2P98095 1184 aa26.9■■□□□ 1.9
TRIM3-208ENST00000529058 TARBP1Q13395 1621 aaKnown RBP26.9■■□□□ 1.9
TRIM3-208ENST00000529058 CCDC88BA6NC98 1476 aa26.87■■□□□ 1.89
TRIM3-208ENST00000529058 POLA1P09884 1462 aaPredicted RBP26.74■■□□□ 1.87
TRIM3-208ENST00000529058 CLASP1Q7Z460 1538 aa26.73■■□□□ 1.87
TRIM3-208ENST00000529058 SYNJ1O43426 1573 aa26.65■■□□□ 1.86
TRIM3-208ENST00000529058 SNAPC4Q5SXM2 1469 aa26.64■■□□□ 1.86
TRIM3-208ENST00000529058 RAD54L2Q9Y4B4 1467 aa26.64■■□□□ 1.86
TRIM3-208ENST00000529058 TDRD9Q8NDG6 1382 aaKnown RBP26.63■■□□□ 1.85
TRIM3-208ENST00000529058 SOGA1O94964 1423 aa26.59■■□□□ 1.85
TRIM3-208ENST00000529058 WDR97A6NE52 1622 aa26.58■■□□□ 1.85
TRIM3-208ENST00000529058 CHMP7Q8WUX9 453 aaPredicted RBP26.58■■□□□ 1.85
TRIM3-208ENST00000529058 MAGI1Q96QZ7 1491 aaPredicted RBP26.54■■□□□ 1.84
TRIM3-208ENST00000529058 GAPVD1Q14C86 1478 aa26.49■■□□□ 1.83
TRIM3-208ENST00000529058 SYNJ2O15056 1496 aa26.46■■□□□ 1.83
TRIM3-208ENST00000529058 GRIN2BQ13224 1484 aa26.45■■□□□ 1.82
TRIM3-208ENST00000529058 FGD5Q6ZNL6 1462 aa26.45■■□□□ 1.82
TRIM3-208ENST00000529058 PBRM1Q86U86 1689 aa26.34■■□□□ 1.81
TRIM3-208ENST00000529058 CUX1P39880 1505 aa26.31■■□□□ 1.8
TRIM3-208ENST00000529058 ERCC6L2Q5T890 1561 aa26.24■■□□□ 1.79
TRIM3-208ENST00000529058 KIF13AQ9H1H9 1805 aa26.18■■□□□ 1.78
TRIM3-208ENST00000529058 ABCA5Q8WWZ7 1642 aa26.16■■□□□ 1.78
TRIM3-208ENST00000529058 CEP170Q5SW79 1584 aa26.14■■□□□ 1.78
TRIM3-208ENST00000529058 GRIN2AQ12879 1464 aa26.11■■□□□ 1.77
TRIM3-208ENST00000529058 ABCA10Q8WWZ4 1543 aa26.11■■□□□ 1.77
TRIM3-208ENST00000529058 NUP160Q12769 1436 aa26.06■■□□□ 1.76
TRIM3-208ENST00000529058 SHROOM2Q13796 1616 aa26.06■■□□□ 1.76
TRIM3-208ENST00000529058 ADAMTS12P58397 1594 aa26.02■■□□□ 1.76
TRIM3-208ENST00000529058 ILDR1Q86SU0 546 aaPredicted RBP25.92■■□□□ 1.74
TRIM3-208ENST00000529058 FAM69CQ0P6D2 419 aa25.9■■□□□ 1.74
TRIM3-208ENST00000529058 ABCC10Q5T3U5 1492 aa25.9■■□□□ 1.74
TRIM3-208ENST00000529058 FHAD1B1AJZ9 1412 aa25.88■■□□□ 1.73
TRIM3-208ENST00000529058 KDM4FA0A1W2PPD8 638 aa25.88■■□□□ 1.73
TRIM3-208ENST00000529058 PRG4Q92954 1404 aaPredicted RBP25.87■■□□□ 1.73
TRIM3-208ENST00000529058 WRNQ14191 1432 aaPredicted RBP eCLIP25.84■■□□□ 1.73
TRIM3-208ENST00000529058 DIP2BQ9P265 1576 aa25.82■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms