RNA–Protein interactions for RNA: ENST00000526504.5

ME3-205, Transcript of malic enzyme 3, humanhuman

TSL 2

Gene ME3, Length 1,776 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ME3-205ENST00000526504 NISCHQ9Y2I1 1504 aa51.35■■■■■ 5.81
ME3-205ENST00000526504 CCDC180Q9P1Z9 1646 aa45.27■■■■■ 4.84
ME3-205ENST00000526504 ABCC9O60706 1549 aa43.62■■■■■ 4.57
ME3-205ENST00000526504 ZCCHC6Q5VYS8 1495 aaKnown RBP42.94■■■■■ 4.46
ME3-205ENST00000526504 DCAF8L2P0C7V8 631 aa42.68■■■■■ 4.42
ME3-205ENST00000526504 DCAF1Q9Y4B6 1507 aa42.51■■■■■ 4.4
ME3-205ENST00000526504 NACADO15069 1562 aa42.41■■■■■ 4.38
ME3-205ENST00000526504 MYO15BQ96JP2 1530 aa42.4■■■■■ 4.38
ME3-205ENST00000526504 RB1CC1Q8TDY2 1594 aa42.27■■■■■ 4.36
ME3-205ENST00000526504 SCRIBQ14160 1630 aa41.42■■■■■ 4.22
ME3-205ENST00000526504 UNC13AQ9UPW8 1703 aa41.28■■■■■ 4.2
ME3-205ENST00000526504 SHROOM4Q9ULL8 1493 aa41.12■■■■■ 4.17
ME3-205ENST00000526504 BICRAQ9NZM4 1560 aa40.95■■■■■ 4.15
ME3-205ENST00000526504 PABPN1Q86U42 306 aaKnown RBP eCLIP40.92■■■■■ 4.14
ME3-205ENST00000526504 CECR2Q9BXF3 1484 aa39.93■■■■□ 3.98
ME3-205ENST00000526504 EIF4G1Q04637 1599 aaKnown RBP39.83■■■■□ 3.97
ME3-205ENST00000526504 BAZ1AQ9NRL2 1556 aaPredicted RBP39.76■■■■□ 3.95
ME3-205ENST00000526504 SMARCA4P51532 1647 aa39.68■■■■□ 3.94
ME3-205ENST00000526504 MROH2BQ7Z745 1585 aa39.6■■■■□ 3.93
ME3-205ENST00000526504 CC2D2AQ9P2K1 1620 aa39.47■■■■□ 3.91
ME3-205ENST00000526504 RSF1Q96T23 1441 aaPredicted RBP39.44■■■■□ 3.9
ME3-205ENST00000526504 DNAJC5BQ9UF47 199 aa39.33■■■■□ 3.89
ME3-205ENST00000526504 ATAD2BQ9ULI0 1458 aa39.28■■■■□ 3.88
ME3-205ENST00000526504 SMARCA2P51531 1590 aa39.27■■■■□ 3.88
ME3-205ENST00000526504 PEG3Q9GZU2 1588 aa39.26■■■■□ 3.88
ME3-205ENST00000526504 WIZO95785 1651 aa39.2■■■■□ 3.87
ME3-205ENST00000526504 SUPT5HO00267 1087 aaKnown RBP39.16■■■■□ 3.86
ME3-205ENST00000526504 NCAPD3P42695 1498 aa39.14■■■■□ 3.86
ME3-205ENST00000526504 BAZ1BQ9UIG0 1483 aaKnown RBP39.02■■■■□ 3.84
ME3-205ENST00000526504 HMGXB3Q12766 1538 aa39■■■■□ 3.83
ME3-205ENST00000526504 TOP2AP11388 1531 aaKnown RBP38.84■■■■□ 3.81
ME3-205ENST00000526504 CCDC88BA6NC98 1476 aa38.4■■■■□ 3.74
ME3-205ENST00000526504 CADPSQ9ULU8 1353 aa38.06■■■■□ 3.68
ME3-205ENST00000526504 CFTRP13569 1480 aa37.98■■■■□ 3.67
ME3-205ENST00000526504 NESP48681 1621 aa37.97■■■■□ 3.67
ME3-205ENST00000526504 LAMC3Q9Y6N6 1575 aa37.97■■■■□ 3.67
ME3-205ENST00000526504 CHIC1Q5VXU3 224 aa37.9■■■■□ 3.66
ME3-205ENST00000526504 PDS5BQ9NTI5 1447 aa37.72■■■■□ 3.63
ME3-205ENST00000526504 PRDM2Q13029 1718 aa37.7■■■■□ 3.63
ME3-205ENST00000526504 FANCD2Q9BXW9 1451 aa37.62■■■■□ 3.61
ME3-205ENST00000526504 ERCC6Q03468 1493 aa37.55■■■■□ 3.6
ME3-205ENST00000526504 KIF21AQ7Z4S6 1674 aa37.51■■■■□ 3.6
ME3-205ENST00000526504 CEP164Q9UPV0 1460 aa37.5■■■■□ 3.59
ME3-205ENST00000526504 MRC2Q9UBG0 1479 aa37.27■■■■□ 3.56
ME3-205ENST00000526504 ABCC8Q09428 1581 aa37.24■■■■□ 3.55
ME3-205ENST00000526504 THOC2Q8NI27 1593 aaKnown RBP37.19■■■■□ 3.54
ME3-205ENST00000526504 URB2Q14146 1524 aaKnown RBP37.18■■■■□ 3.54
ME3-205ENST00000526504 WRNQ14191 1432 aaPredicted RBP eCLIP37.18■■■■□ 3.54
ME3-205ENST00000526504 DNMBPQ6XZF7 1577 aa37.11■■■■□ 3.53
ME3-205ENST00000526504 WDR62O43379 1518 aa37.11■■■■□ 3.53
ME3-205ENST00000526504 CUX1P39880 1505 aa37.11■■■■□ 3.53
ME3-205ENST00000526504 TOPBP1Q92547 1522 aa37.1■■■■□ 3.53
ME3-205ENST00000526504 SYNJ1O43426 1573 aa37.02■■■■□ 3.52
ME3-205ENST00000526504 TOP2BQ02880 1626 aa36.98■■■■□ 3.51
ME3-205ENST00000526504 BIVM-ERCC5R4GMW8 1640 aa36.95■■■■□ 3.51
ME3-205ENST00000526504 TRIM41Q8WV44 630 aa36.89■■■■□ 3.5
ME3-205ENST00000526504 FGD5Q6ZNL6 1462 aa36.86■■■■□ 3.49
ME3-205ENST00000526504 POLA1P09884 1462 aaPredicted RBP36.84■■■■□ 3.49
ME3-205ENST00000526504 CUX2O14529 1486 aa36.83■■■■□ 3.49
ME3-205ENST00000526504 SOGA1O94964 1423 aa36.72■■■■□ 3.47
ME3-205ENST00000526504 RAD54L2Q9Y4B4 1467 aa36.68■■■■□ 3.46
ME3-205ENST00000526504 IFT140Q96RY7 1462 aa36.67■■■■□ 3.46
ME3-205ENST00000526504 TARBP1Q13395 1621 aaKnown RBP36.61■■■■□ 3.45
ME3-205ENST00000526504 ABCA10Q8WWZ4 1543 aa36.54■■■■□ 3.44
ME3-205ENST00000526504 WDR97A6NE52 1622 aa36.47■■■■□ 3.43
ME3-205ENST00000526504 ZNF608Q9ULD9 1512 aaPredicted RBP36.45■■■■□ 3.43
ME3-205ENST00000526504 TDRD9Q8NDG6 1382 aaKnown RBP36.43■■■■□ 3.42
ME3-205ENST00000526504 LOC105371045A0A1W2PR82 267 aa36.43■■■■□ 3.42
ME3-205ENST00000526504 AQRO60306 1485 aaKnown RBP eCLIP36.35■■■■□ 3.41
ME3-205ENST00000526504 KIF27Q86VH2 1401 aa36.35■■■■□ 3.41
ME3-205ENST00000526504 EIF4G3O43432 1585 aaKnown RBP36.32■■■■□ 3.4
ME3-205ENST00000526504 GAPVD1Q14C86 1478 aa36.3■■■■□ 3.4
ME3-205ENST00000526504 ABCA5Q8WWZ7 1642 aa36.3■■■■□ 3.4
ME3-205ENST00000526504 RUSC2Q8N2Y8 1516 aa36.24■■■■□ 3.39
ME3-205ENST00000526504 GRIN2BQ13224 1484 aa36.18■■■■□ 3.38
ME3-205ENST00000526504 EEA1Q15075 1411 aa36.16■■■■□ 3.38
ME3-205ENST00000526504 PBRM1Q86U86 1689 aa36.13■■■■□ 3.37
ME3-205ENST00000526504 ERICH3Q5RHP9 1530 aa36.11■■■■□ 3.37
ME3-205ENST00000526504 FAM9AQ8IZU1 332 aaPredicted RBP36.11■■■■□ 3.37
ME3-205ENST00000526504 IGF1RP08069 1367 aa36.1■■■■□ 3.37
ME3-205ENST00000526504 SNAPC4Q5SXM2 1469 aa36.03■■■■□ 3.36
ME3-205ENST00000526504 CSRNP3Q8WYN3 585 aa36.02■■■■□ 3.36
ME3-205ENST00000526504 MAGI1Q96QZ7 1491 aaPredicted RBP36■■■■□ 3.35
ME3-205ENST00000526504 CUL7Q14999 1698 aa35.92■■■■□ 3.34
ME3-205ENST00000526504 CARMIL1Q5VZK9 1371 aa35.91■■■■□ 3.34
ME3-205ENST00000526504 FHAD1B1AJZ9 1412 aa35.91■■■■□ 3.34
ME3-205ENST00000526504 ADAMTS12P58397 1594 aa35.91■■■■□ 3.34
ME3-205ENST00000526504 SYNJ2O15056 1496 aa35.86■■■■□ 3.33
ME3-205ENST00000526504 PRXQ9BXM0 1461 aa35.83■■■■□ 3.33
ME3-205ENST00000526504 CHMP7Q8WUX9 453 aaPredicted RBP35.81■■■■□ 3.32
ME3-205ENST00000526504 FBLN2P98095 1184 aa35.81■■■■□ 3.32
ME3-205ENST00000526504 RAPGEF2Q9Y4G8 1499 aa35.77■■■■□ 3.32
ME3-205ENST00000526504 GRIN2AQ12879 1464 aa35.72■■■■□ 3.31
ME3-205ENST00000526504 KIF21BO75037 1637 aa35.7■■■■□ 3.31
ME3-205ENST00000526504 CHD1O14646 1710 aa35.69■■■■□ 3.3
ME3-205ENST00000526504 EHMT2Q96KQ7 1210 aa35.6■■■■□ 3.29
ME3-205ENST00000526504 GOLGA3Q08378 1498 aa35.58■■■■□ 3.29
ME3-205ENST00000526504 NUP160Q12769 1436 aa35.52■■■■□ 3.28
ME3-205ENST00000526504 OSCARQ8IYS5 282 aa35.5■■■■□ 3.27
ME3-205ENST00000526504 CEP170Q5SW79 1584 aa35.49■■■■□ 3.27
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms