RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 NISCHQ9Y2I1 1504 aa35■■■■□ 3.19
USH1C-204ENST00000526313 CCDC180Q9P1Z9 1646 aa30.24■■■□□ 2.43
USH1C-204ENST00000526313 ZCCHC6Q5VYS8 1495 aaKnown RBP29.51■■■□□ 2.31
USH1C-204ENST00000526313 DCAF1Q9Y4B6 1507 aa28.96■■■□□ 2.23
USH1C-204ENST00000526313 SHROOM4Q9ULL8 1493 aa28.86■■■□□ 2.21
USH1C-204ENST00000526313 DCAF8L2P0C7V8 631 aa28.67■■■□□ 2.18
USH1C-204ENST00000526313 MYO15BQ96JP2 1530 aa28.43■■■□□ 2.14
USH1C-204ENST00000526313 ABCC9O60706 1549 aa28.14■■■□□ 2.1
USH1C-204ENST00000526313 NACADO15069 1562 aa28.06■■■□□ 2.08
USH1C-204ENST00000526313 SUPT5HO00267 1087 aaKnown RBP28.03■■■□□ 2.08
USH1C-204ENST00000526313 SCRIBQ14160 1630 aa27.86■■■□□ 2.05
USH1C-204ENST00000526313 RB1CC1Q8TDY2 1594 aa27.67■■■□□ 2.02
USH1C-204ENST00000526313 RSF1Q96T23 1441 aaPredicted RBP27.37■■□□□ 1.97
USH1C-204ENST00000526313 CECR2Q9BXF3 1484 aa27.18■■□□□ 1.94
USH1C-204ENST00000526313 CHIC1Q5VXU3 224 aa27.18■■□□□ 1.94
USH1C-204ENST00000526313 UNC13AQ9UPW8 1703 aa27.17■■□□□ 1.94
USH1C-204ENST00000526313 MROH2BQ7Z745 1585 aa27.07■■□□□ 1.92
USH1C-204ENST00000526313 BAZ1AQ9NRL2 1556 aaPredicted RBP26.95■■□□□ 1.91
USH1C-204ENST00000526313 BICRAQ9NZM4 1560 aa26.91■■□□□ 1.9
USH1C-204ENST00000526313 WIZO95785 1651 aa26.86■■□□□ 1.89
USH1C-204ENST00000526313 SMARCA4P51532 1647 aa26.78■■□□□ 1.88
USH1C-204ENST00000526313 PABPN1Q86U42 306 aaKnown RBP eCLIP26.67■■□□□ 1.86
USH1C-204ENST00000526313 TOP2AP11388 1531 aaKnown RBP26.58■■□□□ 1.85
USH1C-204ENST00000526313 PEG3Q9GZU2 1588 aa26.47■■□□□ 1.83
USH1C-204ENST00000526313 EIF4G1Q04637 1599 aaKnown RBP26.39■■□□□ 1.81
USH1C-204ENST00000526313 SMARCA2P51531 1590 aa26.37■■□□□ 1.81
USH1C-204ENST00000526313 CCDC88BA6NC98 1476 aa26.36■■□□□ 1.81
USH1C-204ENST00000526313 TRIM41Q8WV44 630 aa26.33■■□□□ 1.81
USH1C-204ENST00000526313 ATAD2BQ9ULI0 1458 aa26.24■■□□□ 1.79
USH1C-204ENST00000526313 LOC105371045A0A1W2PR82 267 aa26.15■■□□□ 1.78
USH1C-204ENST00000526313 BAZ1BQ9UIG0 1483 aaKnown RBP26.07■■□□□ 1.76
USH1C-204ENST00000526313 NCAPD3P42695 1498 aa25.94■■□□□ 1.74
USH1C-204ENST00000526313 ABCC8Q09428 1581 aa25.93■■□□□ 1.74
USH1C-204ENST00000526313 HMGXB3Q12766 1538 aa25.91■■□□□ 1.74
USH1C-204ENST00000526313 FAM9AQ8IZU1 332 aaPredicted RBP25.84■■□□□ 1.73
USH1C-204ENST00000526313 WRNQ14191 1432 aaPredicted RBP eCLIP25.71■■□□□ 1.71
USH1C-204ENST00000526313 EEA1Q15075 1411 aa25.61■■□□□ 1.69
USH1C-204ENST00000526313 SYNJ1O43426 1573 aa25.59■■□□□ 1.69
USH1C-204ENST00000526313 SOGA1O94964 1423 aa25.58■■□□□ 1.69
USH1C-204ENST00000526313 CFTRP13569 1480 aa25.5■■□□□ 1.67
USH1C-204ENST00000526313 CC2D2AQ9P2K1 1620 aa25.49■■□□□ 1.67
USH1C-204ENST00000526313 RUSC2Q8N2Y8 1516 aa25.47■■□□□ 1.67
USH1C-204ENST00000526313 TOP2BQ02880 1626 aa25.45■■□□□ 1.66
USH1C-204ENST00000526313 CSRNP3Q8WYN3 585 aa25.45■■□□□ 1.66
USH1C-204ENST00000526313 PCGF6Q9BYE7 350 aa25.45■■□□□ 1.66
USH1C-204ENST00000526313 EHMT2Q96KQ7 1210 aa25.42■■□□□ 1.66
USH1C-204ENST00000526313 BIVM-ERCC5R4GMW8 1640 aa25.41■■□□□ 1.66
USH1C-204ENST00000526313 TRIM26Q12899 539 aaPredicted RBP25.34■■□□□ 1.65
USH1C-204ENST00000526313 PRDM2Q13029 1718 aa25.34■■□□□ 1.65
USH1C-204ENST00000526313 TNIKQ9UKE5 1360 aa25.33■■□□□ 1.65
USH1C-204ENST00000526313 CADPSQ9ULU8 1353 aa25.3■■□□□ 1.64
USH1C-204ENST00000526313 CUX1P39880 1505 aa25.27■■□□□ 1.64
USH1C-204ENST00000526313 GOLGA3Q08378 1498 aa25.26■■□□□ 1.63
USH1C-204ENST00000526313 KIF21BO75037 1637 aa25.25■■□□□ 1.63
USH1C-204ENST00000526313 CEP164Q9UPV0 1460 aa25.22■■□□□ 1.63
USH1C-204ENST00000526313 CEP162Q5TB80 1403 aa25.2■■□□□ 1.62
USH1C-204ENST00000526313 HRCP23327 699 aa25.16■■□□□ 1.62
USH1C-204ENST00000526313 UBTFP17480 764 aaKnown RBP25.11■■□□□ 1.61
USH1C-204ENST00000526313 RAPGEF2Q9Y4G8 1499 aa25.03■■□□□ 1.6
USH1C-204ENST00000526313 PRXQ9BXM0 1461 aa25.02■■□□□ 1.6
USH1C-204ENST00000526313 KIF27Q86VH2 1401 aa25.01■■□□□ 1.59
USH1C-204ENST00000526313 ERICH3Q5RHP9 1530 aa24.99■■□□□ 1.59
USH1C-204ENST00000526313 FANCD2Q9BXW9 1451 aa24.99■■□□□ 1.59
USH1C-204ENST00000526313 LAMC3Q9Y6N6 1575 aa24.92■■□□□ 1.58
USH1C-204ENST00000526313 NESP48681 1621 aa24.9■■□□□ 1.58
USH1C-204ENST00000526313 FGD5Q6ZNL6 1462 aa24.89■■□□□ 1.57
USH1C-204ENST00000526313 CLIP1P30622 1438 aa24.88■■□□□ 1.57
USH1C-204ENST00000526313 DNMBPQ6XZF7 1577 aa24.86■■□□□ 1.57
USH1C-204ENST00000526313 CUX2O14529 1486 aa24.82■■□□□ 1.56
USH1C-204ENST00000526313 PPARGC1BQ86YN6 1023 aaKnown RBP24.82■■□□□ 1.56
USH1C-204ENST00000526313 IGF1RP08069 1367 aa24.79■■□□□ 1.56
USH1C-204ENST00000526313 TOPBP1Q92547 1522 aa24.79■■□□□ 1.56
USH1C-204ENST00000526313 DNAJC5BQ9UF47 199 aa24.78■■□□□ 1.56
USH1C-204ENST00000526313 VPS8Q8N3P4 1428 aa24.75■■□□□ 1.55
USH1C-204ENST00000526313 PDS5BQ9NTI5 1447 aa24.72■■□□□ 1.55
USH1C-204ENST00000526313 POLA1P09884 1462 aaPredicted RBP24.71■■□□□ 1.55
USH1C-204ENST00000526313 ABCA10Q8WWZ4 1543 aa24.71■■□□□ 1.55
USH1C-204ENST00000526313 URB2Q14146 1524 aaKnown RBP24.68■■□□□ 1.54
USH1C-204ENST00000526313 RAD54L2Q9Y4B4 1467 aa24.64■■□□□ 1.54
USH1C-204ENST00000526313 CARMIL1Q5VZK9 1371 aa24.64■■□□□ 1.53
USH1C-204ENST00000526313 ARAP1Q96P48 1450 aa24.6■■□□□ 1.53
USH1C-204ENST00000526313 KIF21AQ7Z4S6 1674 aa24.57■■□□□ 1.52
USH1C-204ENST00000526313 ZEB1P37275 1124 aaPredicted RBP24.57■■□□□ 1.52
USH1C-204ENST00000526313 WDR97A6NE52 1622 aa24.56■■□□□ 1.52
USH1C-204ENST00000526313 ARHGAP35Q9NRY4 1499 aa24.52■■□□□ 1.52
USH1C-204ENST00000526313 RANGAP1P46060 587 aaPredicted RBP24.51■■□□□ 1.51
USH1C-204ENST00000526313 CUL7Q14999 1698 aa24.48■■□□□ 1.51
USH1C-204ENST00000526313 TTBK1Q5TCY1 1321 aaPredicted RBP24.46■■□□□ 1.51
USH1C-204ENST00000526313 ABCA5Q8WWZ7 1642 aa24.45■■□□□ 1.5
USH1C-204ENST00000526313 APLP2Q06481 763 aa24.44■■□□□ 1.5
USH1C-204ENST00000526313 TARBP1Q13395 1621 aaKnown RBP24.4■■□□□ 1.5
USH1C-204ENST00000526313 GAPVD1Q14C86 1478 aa24.37■■□□□ 1.49
USH1C-204ENST00000526313 MRC2Q9UBG0 1479 aa24.37■■□□□ 1.49
USH1C-204ENST00000526313 TDRD9Q8NDG6 1382 aaKnown RBP24.35■■□□□ 1.49
USH1C-204ENST00000526313 CTTNBP2Q8WZ74 1663 aa24.27■■□□□ 1.48
USH1C-204ENST00000526313 MAP3K1Q13233 1512 aa24.26■■□□□ 1.47
USH1C-204ENST00000526313 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.26■■□□□ 1.47
USH1C-204ENST00000526313 KANK4Q5T7N3 995 aaPredicted RBP24.25■■□□□ 1.47
USH1C-204ENST00000526313 EFCAB5A4FU69 1503 aa24.24■■□□□ 1.47
USH1C-204ENST00000526313 WDR62O43379 1518 aa24.24■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms