RNA–Protein interactions for RNA: ENST00000525121.2

HMGB1P40-201, Transcript of high mobility group box 1 pseudogene 40, humanhuman

BASIC

Gene HMGB1P40, Length 540 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P40-201ENST00000525121 NISCHQ9Y2I1 1504 aa12.93□□□□□ -0.34
HMGB1P40-201ENST00000525121 CCDC180Q9P1Z9 1646 aa11.49□□□□□ -0.57
HMGB1P40-201ENST00000525121 ABCC9O60706 1549 aa11.22□□□□□ -0.61
HMGB1P40-201ENST00000525121 RB1CC1Q8TDY2 1594 aa10.83□□□□□ -0.68
HMGB1P40-201ENST00000525121 DCAF8L2P0C7V8 631 aa10.83□□□□□ -0.68
HMGB1P40-201ENST00000525121 NACADO15069 1562 aa10.82□□□□□ -0.68
HMGB1P40-201ENST00000525121 ZCCHC6Q5VYS8 1495 aaKnown RBP10.78□□□□□ -0.68
HMGB1P40-201ENST00000525121 MYO15BQ96JP2 1530 aa10.74□□□□□ -0.69
HMGB1P40-201ENST00000525121 DCAF1Q9Y4B6 1507 aa10.71□□□□□ -0.69
HMGB1P40-201ENST00000525121 SCRIBQ14160 1630 aa10.49□□□□□ -0.73
HMGB1P40-201ENST00000525121 PABPN1Q86U42 306 aaKnown RBP eCLIP10.47□□□□□ -0.73
HMGB1P40-201ENST00000525121 UNC13AQ9UPW8 1703 aa10.47□□□□□ -0.73
HMGB1P40-201ENST00000525121 BICRAQ9NZM4 1560 aa10.42□□□□□ -0.74
HMGB1P40-201ENST00000525121 SHROOM4Q9ULL8 1493 aa10.42□□□□□ -0.74
HMGB1P40-201ENST00000525121 DNAJC5BQ9UF47 199 aa10.19□□□□□ -0.78
HMGB1P40-201ENST00000525121 EIF4G1Q04637 1599 aaKnown RBP10.18□□□□□ -0.78
HMGB1P40-201ENST00000525121 CC2D2AQ9P2K1 1620 aa10.13□□□□□ -0.79
HMGB1P40-201ENST00000525121 CECR2Q9BXF3 1484 aa10.09□□□□□ -0.79
HMGB1P40-201ENST00000525121 BAZ1AQ9NRL2 1556 aaPredicted RBP10.05□□□□□ -0.8
HMGB1P40-201ENST00000525121 SMARCA4P51532 1647 aa10.03□□□□□ -0.8
HMGB1P40-201ENST00000525121 SMARCA2P51531 1590 aa10□□□□□ -0.81
HMGB1P40-201ENST00000525121 ATAD2BQ9ULI0 1458 aa9.97□□□□□ -0.81
HMGB1P40-201ENST00000525121 NCAPD3P42695 1498 aa9.96□□□□□ -0.82
HMGB1P40-201ENST00000525121 MROH2BQ7Z745 1585 aa9.94□□□□□ -0.82
HMGB1P40-201ENST00000525121 HMGXB3Q12766 1538 aa9.93□□□□□ -0.82
HMGB1P40-201ENST00000525121 BAZ1BQ9UIG0 1483 aaKnown RBP9.92□□□□□ -0.82
HMGB1P40-201ENST00000525121 PEG3Q9GZU2 1588 aa9.92□□□□□ -0.82
HMGB1P40-201ENST00000525121 RSF1Q96T23 1441 aaPredicted RBP9.85□□□□□ -0.83
HMGB1P40-201ENST00000525121 WIZO95785 1651 aa9.83□□□□□ -0.84
HMGB1P40-201ENST00000525121 TOP2AP11388 1531 aaKnown RBP9.78□□□□□ -0.84
HMGB1P40-201ENST00000525121 ERCC6Q03468 1493 aa9.72□□□□□ -0.85
HMGB1P40-201ENST00000525121 LAMC3Q9Y6N6 1575 aa9.71□□□□□ -0.86
HMGB1P40-201ENST00000525121 NESP48681 1621 aa9.68□□□□□ -0.86
HMGB1P40-201ENST00000525121 CADPSQ9ULU8 1353 aa9.68□□□□□ -0.86
HMGB1P40-201ENST00000525121 PDS5BQ9NTI5 1447 aa9.67□□□□□ -0.86
HMGB1P40-201ENST00000525121 SUPT5HO00267 1087 aaKnown RBP9.67□□□□□ -0.86
HMGB1P40-201ENST00000525121 CCDC88BA6NC98 1476 aa9.63□□□□□ -0.87
HMGB1P40-201ENST00000525121 CFTRP13569 1480 aa9.62□□□□□ -0.87
HMGB1P40-201ENST00000525121 CUX2O14529 1486 aa9.59□□□□□ -0.87
HMGB1P40-201ENST00000525121 CEP164Q9UPV0 1460 aa9.59□□□□□ -0.87
HMGB1P40-201ENST00000525121 FANCD2Q9BXW9 1451 aa9.58□□□□□ -0.88
HMGB1P40-201ENST00000525121 KIF21AQ7Z4S6 1674 aa9.57□□□□□ -0.88
HMGB1P40-201ENST00000525121 MRC2Q9UBG0 1479 aa9.56□□□□□ -0.88
HMGB1P40-201ENST00000525121 THOC2Q8NI27 1593 aaKnown RBP9.54□□□□□ -0.88
HMGB1P40-201ENST00000525121 PRDM2Q13029 1718 aa9.53□□□□□ -0.88
HMGB1P40-201ENST00000525121 WDR62O43379 1518 aa9.5□□□□□ -0.89
HMGB1P40-201ENST00000525121 ABCC8Q09428 1581 aa9.46□□□□□ -0.9
HMGB1P40-201ENST00000525121 URB2Q14146 1524 aaKnown RBP9.45□□□□□ -0.9
HMGB1P40-201ENST00000525121 DNMBPQ6XZF7 1577 aa9.41□□□□□ -0.9
HMGB1P40-201ENST00000525121 TOPBP1Q92547 1522 aa9.41□□□□□ -0.9
HMGB1P40-201ENST00000525121 IFT140Q96RY7 1462 aa9.38□□□□□ -0.91
HMGB1P40-201ENST00000525121 CUX1P39880 1505 aa9.34□□□□□ -0.91
HMGB1P40-201ENST00000525121 POLA1P09884 1462 aaPredicted RBP9.34□□□□□ -0.91
HMGB1P40-201ENST00000525121 WRNQ14191 1432 aaPredicted RBP eCLIP9.33□□□□□ -0.92
HMGB1P40-201ENST00000525121 FGD5Q6ZNL6 1462 aa9.33□□□□□ -0.92
HMGB1P40-201ENST00000525121 SOGA1O94964 1423 aa9.31□□□□□ -0.92
HMGB1P40-201ENST00000525121 TOP2BQ02880 1626 aa9.28□□□□□ -0.92
HMGB1P40-201ENST00000525121 TARBP1Q13395 1621 aaKnown RBP9.28□□□□□ -0.92
HMGB1P40-201ENST00000525121 ZNF608Q9ULD9 1512 aaPredicted RBP9.28□□□□□ -0.92
HMGB1P40-201ENST00000525121 RAD54L2Q9Y4B4 1467 aa9.28□□□□□ -0.92
HMGB1P40-201ENST00000525121 EIF4G3O43432 1585 aaKnown RBP9.27□□□□□ -0.93
HMGB1P40-201ENST00000525121 WDR97A6NE52 1622 aa9.27□□□□□ -0.93
HMGB1P40-201ENST00000525121 BIVM-ERCC5R4GMW8 1640 aa9.27□□□□□ -0.93
HMGB1P40-201ENST00000525121 SYNJ1O43426 1573 aa9.26□□□□□ -0.93
HMGB1P40-201ENST00000525121 TDRD9Q8NDG6 1382 aaKnown RBP9.24□□□□□ -0.93
HMGB1P40-201ENST00000525121 AQRO60306 1485 aaKnown RBP eCLIP9.24□□□□□ -0.93
HMGB1P40-201ENST00000525121 ABCA10Q8WWZ4 1543 aa9.23□□□□□ -0.93
HMGB1P40-201ENST00000525121 GRIN2BQ13224 1484 aa9.21□□□□□ -0.93
HMGB1P40-201ENST00000525121 DNAJC5Q9H3Z4 198 aa9.21□□□□□ -0.94
HMGB1P40-201ENST00000525121 GAPVD1Q14C86 1478 aa9.21□□□□□ -0.94
HMGB1P40-201ENST00000525121 SNAPC4Q5SXM2 1469 aa9.19□□□□□ -0.94
HMGB1P40-201ENST00000525121 MAGI1Q96QZ7 1491 aaPredicted RBP9.19□□□□□ -0.94
HMGB1P40-201ENST00000525121 FBLN2P98095 1184 aa9.18□□□□□ -0.94
HMGB1P40-201ENST00000525121 OSCARQ8IYS5 282 aa9.18□□□□□ -0.94
HMGB1P40-201ENST00000525121 ABCA5Q8WWZ7 1642 aa9.18□□□□□ -0.94
HMGB1P40-201ENST00000525121 CHMP7Q8WUX9 453 aaPredicted RBP9.16□□□□□ -0.94
HMGB1P40-201ENST00000525121 PBRM1Q86U86 1689 aa9.16□□□□□ -0.94
HMGB1P40-201ENST00000525121 SYNJ2O15056 1496 aa9.15□□□□□ -0.94
HMGB1P40-201ENST00000525121 KIF27Q86VH2 1401 aa9.15□□□□□ -0.94
HMGB1P40-201ENST00000525121 TRIM41Q8WV44 630 aa9.15□□□□□ -0.94
HMGB1P40-201ENST00000525121 ERICH3Q5RHP9 1530 aa9.14□□□□□ -0.95
HMGB1P40-201ENST00000525121 CHD1O14646 1710 aa9.12□□□□□ -0.95
HMGB1P40-201ENST00000525121 FHAD1B1AJZ9 1412 aa9.12□□□□□ -0.95
HMGB1P40-201ENST00000525121 ADAMTS12P58397 1594 aa9.11□□□□□ -0.95
HMGB1P40-201ENST00000525121 GRIN2AQ12879 1464 aa9.08□□□□□ -0.96
HMGB1P40-201ENST00000525121 CUL7Q14999 1698 aa9.07□□□□□ -0.96
HMGB1P40-201ENST00000525121 IGF1RP08069 1367 aa9.05□□□□□ -0.96
HMGB1P40-201ENST00000525121 CLASP1Q7Z460 1538 aa9.04□□□□□ -0.96
HMGB1P40-201ENST00000525121 CARMIL1Q5VZK9 1371 aa9.03□□□□□ -0.96
HMGB1P40-201ENST00000525121 NUP160Q12769 1436 aa9.03□□□□□ -0.96
HMGB1P40-201ENST00000525121 ARHGEF11O15085 1522 aa9.02□□□□□ -0.97
HMGB1P40-201ENST00000525121 EEA1Q15075 1411 aa9.01□□□□□ -0.97
HMGB1P40-201ENST00000525121 CEP170Q5SW79 1584 aa9.01□□□□□ -0.97
HMGB1P40-201ENST00000525121 CHIC1Q5VXU3 224 aa9□□□□□ -0.97
HMGB1P40-201ENST00000525121 RIMBP3CA6NJZ7 1639 aa9□□□□□ -0.97
HMGB1P40-201ENST00000525121 RIMBP3BA6NNM3 1639 aa9□□□□□ -0.97
HMGB1P40-201ENST00000525121 RIMBP3Q9UFD9 1639 aa9□□□□□ -0.97
HMGB1P40-201ENST00000525121 RAPGEF2Q9Y4G8 1499 aa8.99□□□□□ -0.97
HMGB1P40-201ENST00000525121 RUSC2Q8N2Y8 1516 aa8.99□□□□□ -0.97
HMGB1P40-201ENST00000525121 KIAA0586Q9BVV6 1533 aa8.96□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms