RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 NISCHQ9Y2I1 1504 aa39.5■■■■□ 3.91
LSM1-205ENST00000523511 CCDC180Q9P1Z9 1646 aa35.13■■■■□ 3.21
LSM1-205ENST00000523511 ABCC9O60706 1549 aa34.71■■■■□ 3.15
LSM1-205ENST00000523511 DCAF8L2P0C7V8 631 aa33.38■■■□□ 2.93
LSM1-205ENST00000523511 RB1CC1Q8TDY2 1594 aa33.3■■■□□ 2.92
LSM1-205ENST00000523511 NACADO15069 1562 aa33.21■■■□□ 2.91
LSM1-205ENST00000523511 MYO15BQ96JP2 1530 aa32.95■■■□□ 2.87
LSM1-205ENST00000523511 ZCCHC6Q5VYS8 1495 aaKnown RBP32.8■■■□□ 2.84
LSM1-205ENST00000523511 DCAF1Q9Y4B6 1507 aa32.69■■■□□ 2.82
LSM1-205ENST00000523511 PABPN1Q86U42 306 aaKnown RBP eCLIP32.48■■■□□ 2.79
LSM1-205ENST00000523511 UNC13AQ9UPW8 1703 aa32.23■■■□□ 2.75
LSM1-205ENST00000523511 BICRAQ9NZM4 1560 aa32.13■■■□□ 2.73
LSM1-205ENST00000523511 DNAJC5BQ9UF47 199 aa32.06■■■□□ 2.72
LSM1-205ENST00000523511 SCRIBQ14160 1630 aa32.04■■■□□ 2.72
LSM1-205ENST00000523511 SHROOM4Q9ULL8 1493 aa31.98■■■□□ 2.71
LSM1-205ENST00000523511 EIF4G1Q04637 1599 aaKnown RBP31.4■■■□□ 2.62
LSM1-205ENST00000523511 CC2D2AQ9P2K1 1620 aa31.31■■■□□ 2.6
LSM1-205ENST00000523511 CECR2Q9BXF3 1484 aa31.26■■■□□ 2.59
LSM1-205ENST00000523511 NCAPD3P42695 1498 aa30.68■■■□□ 2.5
LSM1-205ENST00000523511 BAZ1AQ9NRL2 1556 aaPredicted RBP30.66■■■□□ 2.5
LSM1-205ENST00000523511 SMARCA4P51532 1647 aa30.62■■■□□ 2.49
LSM1-205ENST00000523511 ATAD2BQ9ULI0 1458 aa30.62■■■□□ 2.49
LSM1-205ENST00000523511 SMARCA2P51531 1590 aa30.59■■■□□ 2.49
LSM1-205ENST00000523511 HMGXB3Q12766 1538 aa30.42■■■□□ 2.46
LSM1-205ENST00000523511 BAZ1BQ9UIG0 1483 aaKnown RBP30.38■■■□□ 2.45
LSM1-205ENST00000523511 MROH2BQ7Z745 1585 aa30.38■■■□□ 2.45
LSM1-205ENST00000523511 PEG3Q9GZU2 1588 aa30.35■■■□□ 2.45
LSM1-205ENST00000523511 ERCC6Q03468 1493 aa30.04■■■□□ 2.4
LSM1-205ENST00000523511 RSF1Q96T23 1441 aaPredicted RBP30.03■■■□□ 2.4
LSM1-205ENST00000523511 WIZO95785 1651 aa29.98■■■□□ 2.39
LSM1-205ENST00000523511 NESP48681 1621 aa29.89■■■□□ 2.37
LSM1-205ENST00000523511 LAMC3Q9Y6N6 1575 aa29.86■■■□□ 2.37
LSM1-205ENST00000523511 CADPSQ9ULU8 1353 aa29.82■■■□□ 2.36
LSM1-205ENST00000523511 PDS5BQ9NTI5 1447 aa29.81■■■□□ 2.36
LSM1-205ENST00000523511 CUX2O14529 1486 aa29.77■■■□□ 2.36
LSM1-205ENST00000523511 TOP2AP11388 1531 aaKnown RBP29.73■■■□□ 2.35
LSM1-205ENST00000523511 CFTRP13569 1480 aa29.52■■■□□ 2.32
LSM1-205ENST00000523511 CCDC88BA6NC98 1476 aa29.43■■■□□ 2.3
LSM1-205ENST00000523511 KIF21AQ7Z4S6 1674 aa29.42■■■□□ 2.3
LSM1-205ENST00000523511 FANCD2Q9BXW9 1451 aa29.42■■■□□ 2.3
LSM1-205ENST00000523511 THOC2Q8NI27 1593 aaKnown RBP29.41■■■□□ 2.3
LSM1-205ENST00000523511 CEP164Q9UPV0 1460 aa29.41■■■□□ 2.3
LSM1-205ENST00000523511 MRC2Q9UBG0 1479 aa29.4■■■□□ 2.3
LSM1-205ENST00000523511 SUPT5HO00267 1087 aaKnown RBP29.24■■■□□ 2.27
LSM1-205ENST00000523511 WDR62O43379 1518 aa29.24■■■□□ 2.27
LSM1-205ENST00000523511 DNAJC5Q9H3Z4 198 aa29.22■■■□□ 2.27
LSM1-205ENST00000523511 URB2Q14146 1524 aaKnown RBP29.04■■■□□ 2.24
LSM1-205ENST00000523511 PRDM2Q13029 1718 aa29.03■■■□□ 2.24
LSM1-205ENST00000523511 ABCC8Q09428 1581 aa29.01■■■□□ 2.24
LSM1-205ENST00000523511 TOPBP1Q92547 1522 aa28.87■■■□□ 2.21
LSM1-205ENST00000523511 IFT140Q96RY7 1462 aa28.83■■■□□ 2.21
LSM1-205ENST00000523511 DNMBPQ6XZF7 1577 aa28.8■■■□□ 2.2
LSM1-205ENST00000523511 OSCARQ8IYS5 282 aa28.66■■■□□ 2.18
LSM1-205ENST00000523511 SOGA1O94964 1423 aa28.61■■■□□ 2.17
LSM1-205ENST00000523511 POLA1P09884 1462 aaPredicted RBP28.6■■■□□ 2.17
LSM1-205ENST00000523511 ZNF608Q9ULD9 1512 aaPredicted RBP28.6■■■□□ 2.17
LSM1-205ENST00000523511 FGD5Q6ZNL6 1462 aa28.51■■■□□ 2.15
LSM1-205ENST00000523511 CUX1P39880 1505 aa28.5■■■□□ 2.15
LSM1-205ENST00000523511 AQRO60306 1485 aaKnown RBP eCLIP28.49■■■□□ 2.156e-7■■■□□ 15.2
LSM1-205ENST00000523511 RAD54L2Q9Y4B4 1467 aa28.48■■■□□ 2.15
LSM1-205ENST00000523511 TARBP1Q13395 1621 aaKnown RBP28.48■■■□□ 2.15
LSM1-205ENST00000523511 TDRD9Q8NDG6 1382 aaKnown RBP28.45■■■□□ 2.14
LSM1-205ENST00000523511 EIF4G3O43432 1585 aaKnown RBP28.42■■■□□ 2.14
LSM1-205ENST00000523511 FBLN2P98095 1184 aa28.38■■■□□ 2.13
LSM1-205ENST00000523511 WRNQ14191 1432 aaPredicted RBP eCLIP28.37■■■□□ 2.13
LSM1-205ENST00000523511 WDR97A6NE52 1622 aa28.36■■■□□ 2.13
LSM1-205ENST00000523511 CHMP7Q8WUX9 453 aaPredicted RBP28.28■■■□□ 2.12
LSM1-205ENST00000523511 GRIN2BQ13224 1484 aa28.27■■■□□ 2.12
LSM1-205ENST00000523511 ABCA10Q8WWZ4 1543 aa28.24■■■□□ 2.11
LSM1-205ENST00000523511 GAPVD1Q14C86 1478 aa28.23■■■□□ 2.11
LSM1-205ENST00000523511 TOP2BQ02880 1626 aa28.22■■■□□ 2.11
LSM1-205ENST00000523511 MAGI1Q96QZ7 1491 aaPredicted RBP28.2■■■□□ 2.1
LSM1-205ENST00000523511 SNAPC4Q5SXM2 1469 aa28.19■■■□□ 2.1
LSM1-205ENST00000523511 TRIM41Q8WV44 630 aa28.17■■■□□ 2.1
LSM1-205ENST00000523511 BIVM-ERCC5R4GMW8 1640 aa28.16■■■□□ 2.1
LSM1-205ENST00000523511 SYNJ1O43426 1573 aa28.13■■■□□ 2.09
LSM1-205ENST00000523511 SYNJ2O15056 1496 aa28.09■■■□□ 2.09
LSM1-205ENST00000523511 CHD1O14646 1710 aa28.04■■■□□ 2.08
LSM1-205ENST00000523511 ABCA5Q8WWZ7 1642 aa28.03■■■□□ 2.08
LSM1-205ENST00000523511 PBRM1Q86U86 1689 aa27.97■■■□□ 2.07
LSM1-205ENST00000523511 ARHGEF11O15085 1522 aa27.95■■■□□ 2.06
LSM1-205ENST00000523511 FHAD1B1AJZ9 1412 aa27.92■■■□□ 2.06
LSM1-205ENST00000523511 RIMBP3CA6NJZ7 1639 aa27.92■■■□□ 2.06
LSM1-205ENST00000523511 RIMBP3BA6NNM3 1639 aa27.92■■■□□ 2.06
LSM1-205ENST00000523511 RIMBP3Q9UFD9 1639 aa27.92■■■□□ 2.06
LSM1-205ENST00000523511 ERICH3Q5RHP9 1530 aa27.92■■■□□ 2.06
LSM1-205ENST00000523511 CYB5RLQ6IPT4 315 aa27.9■■■□□ 2.06
LSM1-205ENST00000523511 KIF27Q86VH2 1401 aa27.86■■■□□ 2.05
LSM1-205ENST00000523511 GRIN2AQ12879 1464 aa27.84■■■□□ 2.05
LSM1-205ENST00000523511 CLASP1Q7Z460 1538 aa27.82■■■□□ 2.04
LSM1-205ENST00000523511 ADAMTS12P58397 1594 aa27.79■■■□□ 2.04
LSM1-205ENST00000523511 IGF1RP08069 1367 aa27.73■■■□□ 2.03
LSM1-205ENST00000523511 NUP160Q12769 1436 aa27.73■■■□□ 2.03
LSM1-205ENST00000523511 ARAP1Q96P48 1450 aa27.69■■■□□ 2.02
LSM1-205ENST00000523511 JPH4Q96JJ6 628 aa27.62■■■□□ 2.01
LSM1-205ENST00000523511 CEP170Q5SW79 1584 aa27.61■■■□□ 2.01
LSM1-205ENST00000523511 CARMIL1Q5VZK9 1371 aa27.6■■■□□ 2.01
LSM1-205ENST00000523511 CUL7Q14999 1698 aa27.56■■■□□ 2
LSM1-205ENST00000523511 TRHP20396 242 aaPredicted RBP27.49■■□□□ 1.99
LSM1-205ENST00000523511 PRG4Q92954 1404 aaPredicted RBP27.49■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms