RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 NISCHQ9Y2I1 1504 aa38.48■■■■□ 3.75
LSM1-204ENST00000522515 CCDC180Q9P1Z9 1646 aa33.92■■■■□ 3.02
LSM1-204ENST00000522515 ABCC9O60706 1549 aa32.71■■■□□ 2.83
LSM1-204ENST00000522515 ZCCHC6Q5VYS8 1495 aaKnown RBP32.17■■■□□ 2.74
LSM1-204ENST00000522515 DCAF8L2P0C7V8 631 aa31.97■■■□□ 2.71
LSM1-204ENST00000522515 DCAF1Q9Y4B6 1507 aa31.82■■■□□ 2.69
LSM1-204ENST00000522515 NACADO15069 1562 aa31.75■■■□□ 2.67
LSM1-204ENST00000522515 MYO15BQ96JP2 1530 aa31.74■■■□□ 2.67
LSM1-204ENST00000522515 RB1CC1Q8TDY2 1594 aa31.66■■■□□ 2.66
LSM1-204ENST00000522515 SCRIBQ14160 1630 aa31.05■■■□□ 2.56
LSM1-204ENST00000522515 UNC13AQ9UPW8 1703 aa30.99■■■□□ 2.55
LSM1-204ENST00000522515 SHROOM4Q9ULL8 1493 aa30.82■■■□□ 2.52
LSM1-204ENST00000522515 BICRAQ9NZM4 1560 aa30.72■■■□□ 2.51
LSM1-204ENST00000522515 PABPN1Q86U42 306 aaKnown RBP eCLIP30.67■■■□□ 2.5
LSM1-204ENST00000522515 CECR2Q9BXF3 1484 aa29.95■■■□□ 2.38
LSM1-204ENST00000522515 EIF4G1Q04637 1599 aaKnown RBP29.85■■■□□ 2.37
LSM1-204ENST00000522515 BAZ1AQ9NRL2 1556 aaPredicted RBP29.77■■■□□ 2.36
LSM1-204ENST00000522515 SMARCA4P51532 1647 aa29.73■■■□□ 2.35
LSM1-204ENST00000522515 MROH2BQ7Z745 1585 aa29.69■■■□□ 2.34
LSM1-204ENST00000522515 CC2D2AQ9P2K1 1620 aa29.59■■■□□ 2.33
LSM1-204ENST00000522515 RSF1Q96T23 1441 aaPredicted RBP29.55■■■□□ 2.32
LSM1-204ENST00000522515 DNAJC5BQ9UF47 199 aa29.52■■■□□ 2.32
LSM1-204ENST00000522515 ATAD2BQ9ULI0 1458 aa29.43■■■□□ 2.3
LSM1-204ENST00000522515 PEG3Q9GZU2 1588 aa29.42■■■□□ 2.3
LSM1-204ENST00000522515 WIZO95785 1651 aa29.41■■■□□ 2.3
LSM1-204ENST00000522515 SMARCA2P51531 1590 aa29.39■■■□□ 2.3
LSM1-204ENST00000522515 NCAPD3P42695 1498 aa29.31■■■□□ 2.28
LSM1-204ENST00000522515 SUPT5HO00267 1087 aaKnown RBP29.28■■■□□ 2.28
LSM1-204ENST00000522515 BAZ1BQ9UIG0 1483 aaKnown RBP29.21■■■□□ 2.27
LSM1-204ENST00000522515 HMGXB3Q12766 1538 aa29.21■■■□□ 2.27
LSM1-204ENST00000522515 TOP2AP11388 1531 aaKnown RBP29.09■■■□□ 2.25
LSM1-204ENST00000522515 CCDC88BA6NC98 1476 aa28.77■■■□□ 2.2
LSM1-204ENST00000522515 CADPSQ9ULU8 1353 aa28.49■■■□□ 2.15
LSM1-204ENST00000522515 NESP48681 1621 aa28.48■■■□□ 2.15
LSM1-204ENST00000522515 CFTRP13569 1480 aa28.45■■■□□ 2.15
LSM1-204ENST00000522515 LAMC3Q9Y6N6 1575 aa28.44■■■□□ 2.14
LSM1-204ENST00000522515 PRDM2Q13029 1718 aa28.26■■■□□ 2.11
LSM1-204ENST00000522515 PDS5BQ9NTI5 1447 aa28.23■■■□□ 2.11
LSM1-204ENST00000522515 FANCD2Q9BXW9 1451 aa28.18■■■□□ 2.1
LSM1-204ENST00000522515 KIF21AQ7Z4S6 1674 aa28.14■■■□□ 2.1
LSM1-204ENST00000522515 ERCC6Q03468 1493 aa28.11■■■□□ 2.09
LSM1-204ENST00000522515 CEP164Q9UPV0 1460 aa28.07■■■□□ 2.08
LSM1-204ENST00000522515 ABCC8Q09428 1581 aa27.92■■■□□ 2.06
LSM1-204ENST00000522515 MRC2Q9UBG0 1479 aa27.91■■■□□ 2.06
LSM1-204ENST00000522515 THOC2Q8NI27 1593 aaKnown RBP27.89■■■□□ 2.06
LSM1-204ENST00000522515 URB2Q14146 1524 aaKnown RBP27.87■■■□□ 2.05
LSM1-204ENST00000522515 WRNQ14191 1432 aaPredicted RBP eCLIP27.84■■■□□ 2.05
LSM1-204ENST00000522515 CUX1P39880 1505 aa27.81■■■□□ 2.04
LSM1-204ENST00000522515 DNMBPQ6XZF7 1577 aa27.8■■■□□ 2.04
LSM1-204ENST00000522515 WDR62O43379 1518 aa27.8■■■□□ 2.04
LSM1-204ENST00000522515 TOPBP1Q92547 1522 aa27.8■■■□□ 2.04
LSM1-204ENST00000522515 SYNJ1O43426 1573 aa27.76■■■□□ 2.03
LSM1-204ENST00000522515 TOP2BQ02880 1626 aa27.71■■■□□ 2.03
LSM1-204ENST00000522515 BIVM-ERCC5R4GMW8 1640 aa27.7■■■□□ 2.02
LSM1-204ENST00000522515 CHIC1Q5VXU3 224 aa27.65■■■□□ 2.02
LSM1-204ENST00000522515 FGD5Q6ZNL6 1462 aa27.63■■■□□ 2.01
LSM1-204ENST00000522515 POLA1P09884 1462 aaPredicted RBP27.61■■■□□ 2.01
LSM1-204ENST00000522515 TRIM41Q8WV44 630 aa27.6■■■□□ 2.01
LSM1-204ENST00000522515 CUX2O14529 1486 aa27.57■■■□□ 2
LSM1-204ENST00000522515 RAD54L2Q9Y4B4 1467 aa27.5■■□□□ 1.99
LSM1-204ENST00000522515 SOGA1O94964 1423 aa27.49■■□□□ 1.99
LSM1-204ENST00000522515 TARBP1Q13395 1621 aaKnown RBP27.45■■□□□ 1.99
LSM1-204ENST00000522515 IFT140Q96RY7 1462 aa27.45■■□□□ 1.99
LSM1-204ENST00000522515 ABCA10Q8WWZ4 1543 aa27.36■■□□□ 1.97
LSM1-204ENST00000522515 WDR97A6NE52 1622 aa27.36■■□□□ 1.97
LSM1-204ENST00000522515 ZNF608Q9ULD9 1512 aaPredicted RBP27.33■■□□□ 1.97
LSM1-204ENST00000522515 TDRD9Q8NDG6 1382 aaKnown RBP27.29■■□□□ 1.96
LSM1-204ENST00000522515 AQRO60306 1485 aaKnown RBP eCLIP27.25■■□□□ 1.956e-7■■■□□ 15.2
LSM1-204ENST00000522515 EIF4G3O43432 1585 aaKnown RBP27.23■■□□□ 1.95
LSM1-204ENST00000522515 ABCA5Q8WWZ7 1642 aa27.21■■□□□ 1.95
LSM1-204ENST00000522515 RUSC2Q8N2Y8 1516 aa27.19■■□□□ 1.94
LSM1-204ENST00000522515 KIF27Q86VH2 1401 aa27.19■■□□□ 1.94
LSM1-204ENST00000522515 GAPVD1Q14C86 1478 aa27.18■■□□□ 1.94
LSM1-204ENST00000522515 PBRM1Q86U86 1689 aa27.09■■□□□ 1.93
LSM1-204ENST00000522515 GRIN2BQ13224 1484 aa27.09■■□□□ 1.93
LSM1-204ENST00000522515 FAM9AQ8IZU1 332 aaPredicted RBP27.05■■□□□ 1.92
LSM1-204ENST00000522515 ERICH3Q5RHP9 1530 aa27.04■■□□□ 1.92
LSM1-204ENST00000522515 IGF1RP08069 1367 aa27.04■■□□□ 1.92
LSM1-204ENST00000522515 EEA1Q15075 1411 aa27.03■■□□□ 1.92
LSM1-204ENST00000522515 SNAPC4Q5SXM2 1469 aa26.99■■□□□ 1.91
LSM1-204ENST00000522515 CSRNP3Q8WYN3 585 aa26.96■■□□□ 1.91
LSM1-204ENST00000522515 MAGI1Q96QZ7 1491 aaPredicted RBP26.95■■□□□ 1.9
LSM1-204ENST00000522515 ADAMTS12P58397 1594 aa26.9■■□□□ 1.9
LSM1-204ENST00000522515 CUL7Q14999 1698 aa26.9■■□□□ 1.9
LSM1-204ENST00000522515 CARMIL1Q5VZK9 1371 aa26.88■■□□□ 1.89
LSM1-204ENST00000522515 FHAD1B1AJZ9 1412 aa26.88■■□□□ 1.89
LSM1-204ENST00000522515 SYNJ2O15056 1496 aa26.84■■□□□ 1.89
LSM1-204ENST00000522515 PRXQ9BXM0 1461 aa26.84■■□□□ 1.89
LSM1-204ENST00000522515 FBLN2P98095 1184 aa26.81■■□□□ 1.88
LSM1-204ENST00000522515 CHMP7Q8WUX9 453 aaPredicted RBP26.8■■□□□ 1.88
LSM1-204ENST00000522515 RAPGEF2Q9Y4G8 1499 aa26.78■■□□□ 1.88
LSM1-204ENST00000522515 CHD1O14646 1710 aa26.78■■□□□ 1.88
LSM1-204ENST00000522515 GRIN2AQ12879 1464 aa26.75■■□□□ 1.87
LSM1-204ENST00000522515 KIF21BO75037 1637 aa26.73■■□□□ 1.87
LSM1-204ENST00000522515 EHMT2Q96KQ7 1210 aa26.69■■□□□ 1.86
LSM1-204ENST00000522515 GOLGA3Q08378 1498 aa26.63■■□□□ 1.85
LSM1-204ENST00000522515 CEP170Q5SW79 1584 aa26.61■■□□□ 1.85
LSM1-204ENST00000522515 NUP160Q12769 1436 aa26.6■■□□□ 1.85
LSM1-204ENST00000522515 OSCARQ8IYS5 282 aa26.57■■□□□ 1.84
LSM1-204ENST00000522515 LOC105371045A0A1W2PR82 267 aa26.55■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms