RNA–Protein interactions for RNA: ENST00000522012.5

R3HCC1-208, Transcript of R3H domain and coiled-coil containing 1, humanhuman

TSL 1 (best)

Gene R3HCC1, Length 1,500 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HCC1-208ENST00000522012 NISCHQ9Y2I1 1504 aa49.53■■■■■ 5.52
R3HCC1-208ENST00000522012 CCDC180Q9P1Z9 1646 aa43.39■■■■■ 4.54
R3HCC1-208ENST00000522012 ABCC9O60706 1549 aa41.66■■■■■ 4.26
R3HCC1-208ENST00000522012 ZCCHC6Q5VYS8 1495 aaKnown RBP41.48■■■■■ 4.23
R3HCC1-208ENST00000522012 DCAF8L2P0C7V8 631 aa41.24■■■■■ 4.19
R3HCC1-208ENST00000522012 DCAF1Q9Y4B6 1507 aa40.93■■■■■ 4.14
R3HCC1-208ENST00000522012 MYO15BQ96JP2 1530 aa40.68■■■■■ 4.1
R3HCC1-208ENST00000522012 NACADO15069 1562 aa40.62■■■■■ 4.09
R3HCC1-208ENST00000522012 RB1CC1Q8TDY2 1594 aa40.41■■■■■ 4.06
R3HCC1-208ENST00000522012 SHROOM4Q9ULL8 1493 aa40.07■■■■■ 4
R3HCC1-208ENST00000522012 SCRIBQ14160 1630 aa39.87■■■■□ 3.97
R3HCC1-208ENST00000522012 UNC13AQ9UPW8 1703 aa39.4■■■■□ 3.9
R3HCC1-208ENST00000522012 PABPN1Q86U42 306 aaKnown RBP eCLIP39.23■■■■□ 3.87
R3HCC1-208ENST00000522012 BICRAQ9NZM4 1560 aa39.15■■■■□ 3.86
R3HCC1-208ENST00000522012 DNAJC5BQ9UF47 199 aa38.94■■■■□ 3.82
R3HCC1-208ENST00000522012 CECR2Q9BXF3 1484 aa38.55■■■■□ 3.76
R3HCC1-208ENST00000522012 SUPT5HO00267 1087 aaKnown RBP38.3■■■■□ 3.72
R3HCC1-208ENST00000522012 BAZ1AQ9NRL2 1556 aaPredicted RBP38.29■■■■□ 3.72
R3HCC1-208ENST00000522012 MROH2BQ7Z745 1585 aa38.25■■■■□ 3.71
R3HCC1-208ENST00000522012 RSF1Q96T23 1441 aaPredicted RBP38.23■■■■□ 3.71
R3HCC1-208ENST00000522012 SMARCA4P51532 1647 aa38.17■■■■□ 3.7
R3HCC1-208ENST00000522012 EIF4G1Q04637 1599 aaKnown RBP38.05■■■■□ 3.68
R3HCC1-208ENST00000522012 WIZO95785 1651 aa37.85■■■■□ 3.65
R3HCC1-208ENST00000522012 ATAD2BQ9ULI0 1458 aa37.74■■■■□ 3.63
R3HCC1-208ENST00000522012 PEG3Q9GZU2 1588 aa37.71■■■■□ 3.63
R3HCC1-208ENST00000522012 SMARCA2P51531 1590 aa37.69■■■■□ 3.62
R3HCC1-208ENST00000522012 CC2D2AQ9P2K1 1620 aa37.63■■■■□ 3.61
R3HCC1-208ENST00000522012 NCAPD3P42695 1498 aa37.52■■■■□ 3.6
R3HCC1-208ENST00000522012 BAZ1BQ9UIG0 1483 aaKnown RBP37.5■■■■□ 3.59
R3HCC1-208ENST00000522012 TOP2AP11388 1531 aaKnown RBP37.49■■■■□ 3.59
R3HCC1-208ENST00000522012 HMGXB3Q12766 1538 aa37.37■■■■□ 3.57
R3HCC1-208ENST00000522012 CCDC88BA6NC98 1476 aa37.13■■■■□ 3.53
R3HCC1-208ENST00000522012 CADPSQ9ULU8 1353 aa36.55■■■■□ 3.44
R3HCC1-208ENST00000522012 CFTRP13569 1480 aa36.52■■■■□ 3.44
R3HCC1-208ENST00000522012 NESP48681 1621 aa36.37■■■■□ 3.41
R3HCC1-208ENST00000522012 CHIC1Q5VXU3 224 aa36.32■■■■□ 3.4
R3HCC1-208ENST00000522012 LAMC3Q9Y6N6 1575 aa36.3■■■■□ 3.4
R3HCC1-208ENST00000522012 FANCD2Q9BXW9 1451 aa36.12■■■■□ 3.37
R3HCC1-208ENST00000522012 ABCC8Q09428 1581 aa36.11■■■■□ 3.37
R3HCC1-208ENST00000522012 PRDM2Q13029 1718 aa36.11■■■■□ 3.37
R3HCC1-208ENST00000522012 PDS5BQ9NTI5 1447 aa36.11■■■■□ 3.37
R3HCC1-208ENST00000522012 TRIM41Q8WV44 630 aa36.07■■■■□ 3.36
R3HCC1-208ENST00000522012 WRNQ14191 1432 aaPredicted RBP eCLIP36.01■■■■□ 3.36
R3HCC1-208ENST00000522012 CEP164Q9UPV0 1460 aa35.95■■■■□ 3.35
R3HCC1-208ENST00000522012 DNAJC5Q9H3Z4 198 aa35.9■■■■□ 3.34
R3HCC1-208ENST00000522012 ERCC6Q03468 1493 aa35.83■■■■□ 3.33
R3HCC1-208ENST00000522012 KIF21AQ7Z4S6 1674 aa35.82■■■■□ 3.33
R3HCC1-208ENST00000522012 SYNJ1O43426 1573 aa35.82■■■■□ 3.32
R3HCC1-208ENST00000522012 CUX2O14529 1486 aa35.81■■■■□ 3.32
R3HCC1-208ENST00000522012 CUX1P39880 1505 aa35.8■■■■□ 3.32
R3HCC1-208ENST00000522012 TOP2BQ02880 1626 aa35.72■■■■□ 3.31
R3HCC1-208ENST00000522012 URB2Q14146 1524 aaKnown RBP35.68■■■■□ 3.3
R3HCC1-208ENST00000522012 BIVM-ERCC5R4GMW8 1640 aa35.66■■■■□ 3.3
R3HCC1-208ENST00000522012 MRC2Q9UBG0 1479 aa35.66■■■■□ 3.3
R3HCC1-208ENST00000522012 DNMBPQ6XZF7 1577 aa35.65■■■■□ 3.3
R3HCC1-208ENST00000522012 TOPBP1Q92547 1522 aa35.64■■■■□ 3.3
R3HCC1-208ENST00000522012 FGD5Q6ZNL6 1462 aa35.51■■■■□ 3.28
R3HCC1-208ENST00000522012 WDR62O43379 1518 aa35.45■■■■□ 3.26
R3HCC1-208ENST00000522012 POLA1P09884 1462 aaPredicted RBP35.43■■■■□ 3.26
R3HCC1-208ENST00000522012 THOC2Q8NI27 1593 aaKnown RBP35.42■■■■□ 3.26
R3HCC1-208ENST00000522012 FAM9AQ8IZU1 332 aaPredicted RBP35.39■■■■□ 3.26
R3HCC1-208ENST00000522012 SOGA1O94964 1423 aa35.38■■■■□ 3.25
R3HCC1-208ENST00000522012 RAD54L2Q9Y4B4 1467 aa35.33■■■■□ 3.25
R3HCC1-208ENST00000522012 RUSC2Q8N2Y8 1516 aa35.25■■■■□ 3.23
R3HCC1-208ENST00000522012 EEA1Q15075 1411 aa35.19■■■■□ 3.22
R3HCC1-208ENST00000522012 ABCA10Q8WWZ4 1543 aa35.18■■■■□ 3.22
R3HCC1-208ENST00000522012 KIF27Q86VH2 1401 aa35.17■■■■□ 3.22
R3HCC1-208ENST00000522012 IFT140Q96RY7 1462 aa35.14■■■■□ 3.22
R3HCC1-208ENST00000522012 CSRNP3Q8WYN3 585 aa35.11■■■■□ 3.21
R3HCC1-208ENST00000522012 TARBP1Q13395 1621 aaKnown RBP35.1■■■■□ 3.21
R3HCC1-208ENST00000522012 TDRD9Q8NDG6 1382 aaKnown RBP35.07■■■■□ 3.21
R3HCC1-208ENST00000522012 WDR97A6NE52 1622 aa35.01■■■■□ 3.2
R3HCC1-208ENST00000522012 ZNF608Q9ULD9 1512 aaPredicted RBP34.94■■■■□ 3.18
R3HCC1-208ENST00000522012 LOC105371045A0A1W2PR82 267 aa34.93■■■■□ 3.18
R3HCC1-208ENST00000522012 AQRO60306 1485 aaKnown RBP eCLIP34.93■■■■□ 3.184e-7■■■■□ 19.6
R3HCC1-208ENST00000522012 GAPVD1Q14C86 1478 aa34.93■■■■□ 3.18
R3HCC1-208ENST00000522012 IGF1RP08069 1367 aa34.93■■■■□ 3.18
R3HCC1-208ENST00000522012 EHMT2Q96KQ7 1210 aa34.92■■■■□ 3.18
R3HCC1-208ENST00000522012 ABCA5Q8WWZ7 1642 aa34.89■■■■□ 3.18
R3HCC1-208ENST00000522012 GRIN2BQ13224 1484 aa34.75■■■■□ 3.15
R3HCC1-208ENST00000522012 ERICH3Q5RHP9 1530 aa34.75■■■■□ 3.15
R3HCC1-208ENST00000522012 EIF4G3O43432 1585 aaKnown RBP34.75■■■■□ 3.15
R3HCC1-208ENST00000522012 PRXQ9BXM0 1461 aa34.75■■■■□ 3.15
R3HCC1-208ENST00000522012 CARMIL1Q5VZK9 1371 aa34.75■■■■□ 3.15
R3HCC1-208ENST00000522012 KIF21BO75037 1637 aa34.7■■■■□ 3.14
R3HCC1-208ENST00000522012 GOLGA3Q08378 1498 aa34.68■■■■□ 3.14
R3HCC1-208ENST00000522012 RAPGEF2Q9Y4G8 1499 aa34.66■■■■□ 3.14
R3HCC1-208ENST00000522012 PBRM1Q86U86 1689 aa34.65■■■■□ 3.14
R3HCC1-208ENST00000522012 UBTFP17480 764 aaKnown RBP34.64■■■■□ 3.14
R3HCC1-208ENST00000522012 CUL7Q14999 1698 aa34.61■■■■□ 3.13
R3HCC1-208ENST00000522012 SNAPC4Q5SXM2 1469 aa34.58■■■■□ 3.13
R3HCC1-208ENST00000522012 FHAD1B1AJZ9 1412 aa34.56■■■■□ 3.12
R3HCC1-208ENST00000522012 MAGI1Q96QZ7 1491 aaPredicted RBP34.5■■■■□ 3.11
R3HCC1-208ENST00000522012 ADAMTS12P58397 1594 aa34.5■■■■□ 3.11
R3HCC1-208ENST00000522012 TNIKQ9UKE5 1360 aa34.47■■■■□ 3.11
R3HCC1-208ENST00000522012 CHMP7Q8WUX9 453 aaPredicted RBP34.42■■■■□ 3.1
R3HCC1-208ENST00000522012 FBLN2P98095 1184 aa34.41■■■■□ 3.1
R3HCC1-208ENST00000522012 SYNJ2O15056 1496 aa34.39■■■■□ 3.1
R3HCC1-208ENST00000522012 GRIN2AQ12879 1464 aa34.31■■■■□ 3.08
R3HCC1-208ENST00000522012 RANGAP1P46060 587 aaPredicted RBP34.26■■■■□ 3.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms