RNA–Protein interactions for RNA: ENST00000521621.5

CLK4-209, Transcript of CDC like kinase 4, humanhuman

TSL 1 (best)

Gene CLK4, Length 2,780 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-209ENST00000521621 NISCHQ9Y2I1 1504 aa23.31■■□□□ 1.32
CLK4-209ENST00000521621 CCDC180Q9P1Z9 1646 aa20.89■□□□□ 0.93
CLK4-209ENST00000521621 ABCC9O60706 1549 aa20.03■□□□□ 0.8
CLK4-209ENST00000521621 MYO15BQ96JP2 1530 aa19.61■□□□□ 0.73
CLK4-209ENST00000521621 NACADO15069 1562 aa19.57■□□□□ 0.72
CLK4-209ENST00000521621 RB1CC1Q8TDY2 1594 aa19.53■□□□□ 0.72
CLK4-209ENST00000521621 DCAF1Q9Y4B6 1507 aa19.49■□□□□ 0.71
CLK4-209ENST00000521621 ZCCHC6Q5VYS8 1495 aaKnown RBP19.45■□□□□ 0.7
CLK4-209ENST00000521621 UNC13AQ9UPW8 1703 aa19.07■□□□□ 0.64
CLK4-209ENST00000521621 DCAF8L2P0C7V8 631 aa18.97■□□□□ 0.63
CLK4-209ENST00000521621 SHROOM4Q9ULL8 1493 aa18.96■□□□□ 0.63
CLK4-209ENST00000521621 BICRAQ9NZM4 1560 aa18.92■□□□□ 0.62
CLK4-209ENST00000521621 SCRIBQ14160 1630 aa18.75■□□□□ 0.59
CLK4-209ENST00000521621 PABPN1Q86U42 306 aaKnown RBP eCLIP18.59■□□□□ 0.57
CLK4-209ENST00000521621 EIF4G1Q04637 1599 aaKnown RBP18.38■□□□□ 0.53
CLK4-209ENST00000521621 DNAJC5BQ9UF47 199 aa18.31■□□□□ 0.52
CLK4-209ENST00000521621 CC2D2AQ9P2K1 1620 aa18.27■□□□□ 0.51
CLK4-209ENST00000521621 BAZ1AQ9NRL2 1556 aaPredicted RBP18.09■□□□□ 0.49
CLK4-209ENST00000521621 CECR2Q9BXF3 1484 aa18.09■□□□□ 0.49
CLK4-209ENST00000521621 SMARCA4P51532 1647 aa18.09■□□□□ 0.49
CLK4-209ENST00000521621 PEG3Q9GZU2 1588 aa18.05■□□□□ 0.48
CLK4-209ENST00000521621 NCAPD3P42695 1498 aa18.01■□□□□ 0.47
CLK4-209ENST00000521621 SMARCA2P51531 1590 aa18.01■□□□□ 0.47
CLK4-209ENST00000521621 HMGXB3Q12766 1538 aa17.98■□□□□ 0.47
CLK4-209ENST00000521621 ATAD2BQ9ULI0 1458 aa17.94■□□□□ 0.46
CLK4-209ENST00000521621 MROH2BQ7Z745 1585 aa17.87■□□□□ 0.45
CLK4-209ENST00000521621 BAZ1BQ9UIG0 1483 aaKnown RBP17.76■□□□□ 0.43
CLK4-209ENST00000521621 RSF1Q96T23 1441 aaPredicted RBP17.69■□□□□ 0.42
CLK4-209ENST00000521621 WIZO95785 1651 aa17.67■□□□□ 0.42
CLK4-209ENST00000521621 TOP2AP11388 1531 aaKnown RBP17.61■□□□□ 0.41
CLK4-209ENST00000521621 LAMC3Q9Y6N6 1575 aa17.55■□□□□ 0.4
CLK4-209ENST00000521621 CADPSQ9ULU8 1353 aa17.4■□□□□ 0.38
CLK4-209ENST00000521621 PRDM2Q13029 1718 aa17.36■□□□□ 0.37
CLK4-209ENST00000521621 CFTRP13569 1480 aa17.36■□□□□ 0.37
CLK4-209ENST00000521621 NESP48681 1621 aa17.35■□□□□ 0.37
CLK4-209ENST00000521621 PDS5BQ9NTI5 1447 aa17.34■□□□□ 0.37
CLK4-209ENST00000521621 CUX2O14529 1486 aa17.33■□□□□ 0.36
CLK4-209ENST00000521621 THOC2Q8NI27 1593 aaKnown RBP17.3■□□□□ 0.36
CLK4-209ENST00000521621 CCDC88BA6NC98 1476 aa17.29■□□□□ 0.36
CLK4-209ENST00000521621 ERCC6Q03468 1493 aa17.29■□□□□ 0.36
CLK4-209ENST00000521621 KIF21AQ7Z4S6 1674 aa17.28■□□□□ 0.36
CLK4-209ENST00000521621 WDR62O43379 1518 aa17.19■□□□□ 0.34
CLK4-209ENST00000521621 MRC2Q9UBG0 1479 aa17.18■□□□□ 0.34
CLK4-209ENST00000521621 FANCD2Q9BXW9 1451 aa17.17■□□□□ 0.34
CLK4-209ENST00000521621 CEP164Q9UPV0 1460 aa17.17■□□□□ 0.34
CLK4-209ENST00000521621 ABCC8Q09428 1581 aa17.05■□□□□ 0.32
CLK4-209ENST00000521621 URB2Q14146 1524 aaKnown RBP17.01■□□□□ 0.31
CLK4-209ENST00000521621 DNMBPQ6XZF7 1577 aa16.97■□□□□ 0.31
CLK4-209ENST00000521621 TOPBP1Q92547 1522 aa16.93■□□□□ 0.3
CLK4-209ENST00000521621 SUPT5HO00267 1087 aaKnown RBP16.91■□□□□ 0.3
CLK4-209ENST00000521621 WDR97A6NE52 1622 aa16.87■□□□□ 0.29
CLK4-209ENST00000521621 IFT140Q96RY7 1462 aa16.86■□□□□ 0.29
CLK4-209ENST00000521621 TARBP1Q13395 1621 aaKnown RBP16.81■□□□□ 0.28
CLK4-209ENST00000521621 CUX1P39880 1505 aa16.79■□□□□ 0.28
CLK4-209ENST00000521621 BIVM-ERCC5R4GMW8 1640 aa16.78■□□□□ 0.28
CLK4-209ENST00000521621 POLA1P09884 1462 aaPredicted RBP16.76■□□□□ 0.27
CLK4-209ENST00000521621 TOP2BQ02880 1626 aa16.73■□□□□ 0.27
CLK4-209ENST00000521621 FGD5Q6ZNL6 1462 aa16.7■□□□□ 0.26
CLK4-209ENST00000521621 EIF4G3O43432 1585 aaKnown RBP16.68■□□□□ 0.26
CLK4-209ENST00000521621 WRNQ14191 1432 aaPredicted RBP eCLIP16.66■□□□□ 0.26
CLK4-209ENST00000521621 SOGA1O94964 1423 aa16.65■□□□□ 0.26
CLK4-209ENST00000521621 ABCA10Q8WWZ4 1543 aa16.64■□□□□ 0.26
CLK4-209ENST00000521621 ZNF608Q9ULD9 1512 aaPredicted RBP16.64■□□□□ 0.25
CLK4-209ENST00000521621 SYNJ1O43426 1573 aa16.63■□□□□ 0.25
CLK4-209ENST00000521621 ABCA5Q8WWZ7 1642 aa16.6■□□□□ 0.25
CLK4-209ENST00000521621 DNAJC5Q9H3Z4 198 aa16.6■□□□□ 0.25
CLK4-209ENST00000521621 RAD54L2Q9Y4B4 1467 aa16.59■□□□□ 0.25
CLK4-209ENST00000521621 PBRM1Q86U86 1689 aa16.54■□□□□ 0.24
CLK4-209ENST00000521621 MAGI1Q96QZ7 1491 aaPredicted RBP16.54■□□□□ 0.24
CLK4-209ENST00000521621 GRIN2BQ13224 1484 aa16.53■□□□□ 0.24
CLK4-209ENST00000521621 AQRO60306 1485 aaKnown RBP eCLIP16.51■□□□□ 0.231e-8■■■□□ 18.8
CLK4-209ENST00000521621 GAPVD1Q14C86 1478 aa16.49■□□□□ 0.23
CLK4-209ENST00000521621 ERICH3Q5RHP9 1530 aa16.48■□□□□ 0.23
CLK4-209ENST00000521621 CHD1O14646 1710 aa16.46■□□□□ 0.23
CLK4-209ENST00000521621 TDRD9Q8NDG6 1382 aaKnown RBP16.45■□□□□ 0.22
CLK4-209ENST00000521621 SYNJ2O15056 1496 aa16.43■□□□□ 0.22
CLK4-209ENST00000521621 SNAPC4Q5SXM2 1469 aa16.43■□□□□ 0.22
CLK4-209ENST00000521621 ADAMTS12P58397 1594 aa16.41■□□□□ 0.22
CLK4-209ENST00000521621 OSCARQ8IYS5 282 aa16.41■□□□□ 0.22
CLK4-209ENST00000521621 CLASP1Q7Z460 1538 aa16.37■□□□□ 0.21
CLK4-209ENST00000521621 FHAD1B1AJZ9 1412 aa16.35■□□□□ 0.21
CLK4-209ENST00000521621 CUL7Q14999 1698 aa16.35■□□□□ 0.21
CLK4-209ENST00000521621 KIF27Q86VH2 1401 aa16.33■□□□□ 0.2
CLK4-209ENST00000521621 GRIN2AQ12879 1464 aa16.3■□□□□ 0.2
CLK4-209ENST00000521621 NUP160Q12769 1436 aa16.29■□□□□ 0.2
CLK4-209ENST00000521621 IGF1RP08069 1367 aa16.25■□□□□ 0.19
CLK4-209ENST00000521621 SHROOM2Q13796 1616 aa16.24■□□□□ 0.19
CLK4-209ENST00000521621 CHMP7Q8WUX9 453 aaPredicted RBP16.24■□□□□ 0.19
CLK4-209ENST00000521621 RIMBP3CA6NJZ7 1639 aa16.23■□□□□ 0.19
CLK4-209ENST00000521621 RIMBP3BA6NNM3 1639 aa16.23■□□□□ 0.19
CLK4-209ENST00000521621 RIMBP3Q9UFD9 1639 aa16.23■□□□□ 0.19
CLK4-209ENST00000521621 CEP170Q5SW79 1584 aa16.22■□□□□ 0.19
CLK4-209ENST00000521621 ARHGEF11O15085 1522 aa16.21■□□□□ 0.19
CLK4-209ENST00000521621 RUSC2Q8N2Y8 1516 aa16.17■□□□□ 0.18
CLK4-209ENST00000521621 EEA1Q15075 1411 aa16.14■□□□□ 0.17
CLK4-209ENST00000521621 FBLN2P98095 1184 aa16.13■□□□□ 0.17
CLK4-209ENST00000521621 KIAA0586Q9BVV6 1533 aa16.11■□□□□ 0.17
CLK4-209ENST00000521621 CARMIL1Q5VZK9 1371 aa16.11■□□□□ 0.17
CLK4-209ENST00000521621 TRIM41Q8WV44 630 aa16.11■□□□□ 0.17
CLK4-209ENST00000521621 RAPGEF2Q9Y4G8 1499 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms