RNA–Protein interactions for RNA: ENST00000521540.1

NEFM-205, Transcript of neurofilament medium, humanhuman

TSL 5

Gene NEFM, Length 1,885 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEFM-205ENST00000521540 NISCHQ9Y2I1 1504 aa28.67■■■□□ 2.18
NEFM-205ENST00000521540 CCDC180Q9P1Z9 1646 aa25.36■■□□□ 1.65
NEFM-205ENST00000521540 ABCC9O60706 1549 aa24.42■■□□□ 1.5
NEFM-205ENST00000521540 ZCCHC6Q5VYS8 1495 aaKnown RBP23.98■■□□□ 1.43
NEFM-205ENST00000521540 DCAF1Q9Y4B6 1507 aa23.76■■□□□ 1.39
NEFM-205ENST00000521540 NACADO15069 1562 aa23.73■■□□□ 1.39
NEFM-205ENST00000521540 MYO15BQ96JP2 1530 aa23.73■■□□□ 1.39
NEFM-205ENST00000521540 DCAF8L2P0C7V8 631 aa23.7■■□□□ 1.38
NEFM-205ENST00000521540 RB1CC1Q8TDY2 1594 aa23.67■■□□□ 1.38
NEFM-205ENST00000521540 SHROOM4Q9ULL8 1493 aa23.48■■□□□ 1.35
NEFM-205ENST00000521540 UNC13AQ9UPW8 1703 aa23.17■■□□□ 1.3
NEFM-205ENST00000521540 SCRIBQ14160 1630 aa23.14■■□□□ 1.29
NEFM-205ENST00000521540 SUPT5HO00267 1087 aaKnown RBP23■■□□□ 1.27
NEFM-205ENST00000521540 BICRAQ9NZM4 1560 aa22.97■■□□□ 1.27
NEFM-205ENST00000521540 PABPN1Q86U42 306 aaKnown RBP eCLIP22.86■■□□□ 1.25
NEFM-205ENST00000521540 CHIC1Q5VXU3 224 aa22.43■■□□□ 1.18
NEFM-205ENST00000521540 EIF4G1Q04637 1599 aaKnown RBP22.32■■□□□ 1.16
NEFM-205ENST00000521540 CECR2Q9BXF3 1484 aa22.28■■□□□ 1.16
NEFM-205ENST00000521540 DNAJC5BQ9UF47 199 aa22.23■■□□□ 1.15
NEFM-205ENST00000521540 BAZ1AQ9NRL2 1556 aaPredicted RBP22.2■■□□□ 1.14
NEFM-205ENST00000521540 SMARCA4P51532 1647 aa22.18■■□□□ 1.14
NEFM-205ENST00000521540 RSF1Q96T23 1441 aaPredicted RBP22.14■■□□□ 1.13
NEFM-205ENST00000521540 CC2D2AQ9P2K1 1620 aa22.13■■□□□ 1.13
NEFM-205ENST00000521540 MROH2BQ7Z745 1585 aa22.1■■□□□ 1.13
NEFM-205ENST00000521540 PEG3Q9GZU2 1588 aa21.98■■□□□ 1.11
NEFM-205ENST00000521540 SMARCA2P51531 1590 aa21.95■■□□□ 1.1
NEFM-205ENST00000521540 ATAD2BQ9ULI0 1458 aa21.95■■□□□ 1.1
NEFM-205ENST00000521540 NCAPD3P42695 1498 aa21.88■■□□□ 1.09
NEFM-205ENST00000521540 WIZO95785 1651 aa21.88■■□□□ 1.09
NEFM-205ENST00000521540 HMGXB3Q12766 1538 aa21.84■■□□□ 1.09
NEFM-205ENST00000521540 BAZ1BQ9UIG0 1483 aaKnown RBP21.79■■□□□ 1.08
NEFM-205ENST00000521540 TOP2AP11388 1531 aaKnown RBP21.68■■□□□ 1.06
NEFM-205ENST00000521540 TRIM41Q8WV44 630 aa21.6■■□□□ 1.05
NEFM-205ENST00000521540 LOC105371045A0A1W2PR82 267 aa21.58■■□□□ 1.04
NEFM-205ENST00000521540 HRCP23327 699 aa21.47■■□□□ 1.03
NEFM-205ENST00000521540 PCGF6Q9BYE7 350 aa21.43■■□□□ 1.02
NEFM-205ENST00000521540 CCDC88BA6NC98 1476 aa21.4■■□□□ 1.02
NEFM-205ENST00000521540 TRIM26Q12899 539 aaPredicted RBP21.28■■□□□ 1
NEFM-205ENST00000521540 LAMC3Q9Y6N6 1575 aa21.26■□□□□ 0.99
NEFM-205ENST00000521540 NESP48681 1621 aa21.25■□□□□ 0.99
NEFM-205ENST00000521540 CADPSQ9ULU8 1353 aa21.25■□□□□ 0.99
NEFM-205ENST00000521540 CFTRP13569 1480 aa21.22■□□□□ 0.99
NEFM-205ENST00000521540 FAM9AQ8IZU1 332 aaPredicted RBP21.18■□□□□ 0.98
NEFM-205ENST00000521540 PRDM2Q13029 1718 aa21.13■□□□□ 0.97
NEFM-205ENST00000521540 PDS5BQ9NTI5 1447 aa21.08■□□□□ 0.96
NEFM-205ENST00000521540 KIF21AQ7Z4S6 1674 aa21.04■□□□□ 0.96
NEFM-205ENST00000521540 ABCC8Q09428 1581 aa21.03■□□□□ 0.96
NEFM-205ENST00000521540 FANCD2Q9BXW9 1451 aa21.02■□□□□ 0.96
NEFM-205ENST00000521540 ERCC6Q03468 1493 aa21.01■□□□□ 0.95
NEFM-205ENST00000521540 EEA1Q15075 1411 aa20.99■□□□□ 0.95
NEFM-205ENST00000521540 CEP164Q9UPV0 1460 aa20.96■□□□□ 0.95
NEFM-205ENST00000521540 ZEB1P37275 1124 aaPredicted RBP20.9■□□□□ 0.94
NEFM-205ENST00000521540 THOC2Q8NI27 1593 aaKnown RBP20.89■□□□□ 0.93
NEFM-205ENST00000521540 MRC2Q9UBG0 1479 aa20.86■□□□□ 0.93
NEFM-205ENST00000521540 WRNQ14191 1432 aaPredicted RBP eCLIP20.83■□□□□ 0.93
NEFM-205ENST00000521540 EHMT2Q96KQ7 1210 aa20.82■□□□□ 0.92
NEFM-205ENST00000521540 WDR62O43379 1518 aa20.8■□□□□ 0.92
NEFM-205ENST00000521540 URB2Q14146 1524 aaKnown RBP20.8■□□□□ 0.92
NEFM-205ENST00000521540 TNIKQ9UKE5 1360 aa20.8■□□□□ 0.92
NEFM-205ENST00000521540 SOGA1O94964 1423 aa20.79■□□□□ 0.92
NEFM-205ENST00000521540 CSRNP3Q8WYN3 585 aa20.77■□□□□ 0.92
NEFM-205ENST00000521540 PPARGC1BQ86YN6 1023 aaKnown RBP20.76■□□□□ 0.91
NEFM-205ENST00000521540 DNMBPQ6XZF7 1577 aa20.75■□□□□ 0.91
NEFM-205ENST00000521540 TOPBP1Q92547 1522 aa20.73■□□□□ 0.91
NEFM-205ENST00000521540 CUX1P39880 1505 aa20.71■□□□□ 0.91
NEFM-205ENST00000521540 GOLGA3Q08378 1498 aa20.71■□□□□ 0.91
NEFM-205ENST00000521540 CEP162Q5TB80 1403 aa20.7■□□□□ 0.91
NEFM-205ENST00000521540 SYNJ1O43426 1573 aa20.69■□□□□ 0.9
NEFM-205ENST00000521540 CUX2O14529 1486 aa20.69■□□□□ 0.9
NEFM-205ENST00000521540 TOP2BQ02880 1626 aa20.67■□□□□ 0.9
NEFM-205ENST00000521540 BIVM-ERCC5R4GMW8 1640 aa20.66■□□□□ 0.9
NEFM-205ENST00000521540 RUSC2Q8N2Y8 1516 aa20.65■□□□□ 0.9
NEFM-205ENST00000521540 KIF21BO75037 1637 aa20.65■□□□□ 0.9
NEFM-205ENST00000521540 POLA1P09884 1462 aaPredicted RBP20.58■□□□□ 0.88
NEFM-205ENST00000521540 FGD5Q6ZNL6 1462 aa20.58■□□□□ 0.88
NEFM-205ENST00000521540 UBTFP17480 764 aaKnown RBP20.56■□□□□ 0.88
NEFM-205ENST00000521540 IFT140Q96RY7 1462 aa20.5■□□□□ 0.87
NEFM-205ENST00000521540 TARBP1Q13395 1621 aaKnown RBP20.49■□□□□ 0.87
NEFM-205ENST00000521540 RAD54L2Q9Y4B4 1467 aa20.47■□□□□ 0.87
NEFM-205ENST00000521540 WDR97A6NE52 1622 aa20.44■□□□□ 0.86
NEFM-205ENST00000521540 ABCA10Q8WWZ4 1543 aa20.41■□□□□ 0.86
NEFM-205ENST00000521540 CLIP1P30622 1438 aa20.38■□□□□ 0.85
NEFM-205ENST00000521540 ZNF608Q9ULD9 1512 aaPredicted RBP20.38■□□□□ 0.85
NEFM-205ENST00000521540 ERICH3Q5RHP9 1530 aa20.38■□□□□ 0.85
NEFM-205ENST00000521540 EIF4G3O43432 1585 aaKnown RBP20.35■□□□□ 0.85
NEFM-205ENST00000521540 RAPGEF2Q9Y4G8 1499 aa20.34■□□□□ 0.85
NEFM-205ENST00000521540 VPS8Q8N3P4 1428 aa20.32■□□□□ 0.84
NEFM-205ENST00000521540 ABCA5Q8WWZ7 1642 aa20.31■□□□□ 0.84
NEFM-205ENST00000521540 TDRD9Q8NDG6 1382 aaKnown RBP20.31■□□□□ 0.84
NEFM-205ENST00000521540 CCER1Q8TC90 406 aaPredicted RBP20.3■□□□□ 0.84
NEFM-205ENST00000521540 AQRO60306 1485 aaKnown RBP eCLIP20.3■□□□□ 0.84
NEFM-205ENST00000521540 PRXQ9BXM0 1461 aa20.29■□□□□ 0.84
NEFM-205ENST00000521540 KIF27Q86VH2 1401 aa20.27■□□□□ 0.84
NEFM-205ENST00000521540 GAPVD1Q14C86 1478 aa20.26■□□□□ 0.83
NEFM-205ENST00000521540 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.24■□□□□ 0.83
NEFM-205ENST00000521540 PBRM1Q86U86 1689 aa20.23■□□□□ 0.83
NEFM-205ENST00000521540 GRIN2BQ13224 1484 aa20.21■□□□□ 0.83
NEFM-205ENST00000521540 APLP2Q06481 763 aa20.19■□□□□ 0.82
NEFM-205ENST00000521540 TTBK1Q5TCY1 1321 aaPredicted RBP20.15■□□□□ 0.82
NEFM-205ENST00000521540 SNAPC4Q5SXM2 1469 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms