RNA–Protein interactions for RNA: ENST00000519141.5

SPIDR-209, Transcript of scaffold protein involved in DNA repair, humanhuman

TSL 2

Gene SPIDR, Length 1,699 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-209ENST00000519141 NISCHQ9Y2I1 1504 aa28.28■■■□□ 2.12
SPIDR-209ENST00000519141 CCDC180Q9P1Z9 1646 aa24.77■■□□□ 1.56
SPIDR-209ENST00000519141 ABCC9O60706 1549 aa24.22■■□□□ 1.47
SPIDR-209ENST00000519141 ZCCHC6Q5VYS8 1495 aaKnown RBP23.75■■□□□ 1.39
SPIDR-209ENST00000519141 DCAF1Q9Y4B6 1507 aa23.4■■□□□ 1.34
SPIDR-209ENST00000519141 DCAF8L2P0C7V8 631 aa23.31■■□□□ 1.32
SPIDR-209ENST00000519141 RB1CC1Q8TDY2 1594 aa23.16■■□□□ 1.3
SPIDR-209ENST00000519141 MYO15BQ96JP2 1530 aa23.16■■□□□ 1.3
SPIDR-209ENST00000519141 NACADO15069 1562 aa23.1■■□□□ 1.29
SPIDR-209ENST00000519141 SHROOM4Q9ULL8 1493 aa22.96■■□□□ 1.27
SPIDR-209ENST00000519141 SCRIBQ14160 1630 aa22.73■■□□□ 1.23
SPIDR-209ENST00000519141 UNC13AQ9UPW8 1703 aa22.66■■□□□ 1.22
SPIDR-209ENST00000519141 PABPN1Q86U42 306 aaKnown RBP eCLIP22.62■■□□□ 1.21
SPIDR-209ENST00000519141 BICRAQ9NZM4 1560 aa22.51■■□□□ 1.19
SPIDR-209ENST00000519141 DNAJC5BQ9UF47 199 aa22.51■■□□□ 1.19
SPIDR-209ENST00000519141 SUPT5HO00267 1087 aaKnown RBP22.04■■□□□ 1.12
SPIDR-209ENST00000519141 CECR2Q9BXF3 1484 aa21.94■■□□□ 1.1
SPIDR-209ENST00000519141 EIF4G1Q04637 1599 aaKnown RBP21.92■■□□□ 1.1
SPIDR-209ENST00000519141 CC2D2AQ9P2K1 1620 aa21.89■■□□□ 1.09
SPIDR-209ENST00000519141 RSF1Q96T23 1441 aaPredicted RBP21.88■■□□□ 1.09
SPIDR-209ENST00000519141 BAZ1AQ9NRL2 1556 aaPredicted RBP21.87■■□□□ 1.09
SPIDR-209ENST00000519141 MROH2BQ7Z745 1585 aa21.83■■□□□ 1.08
SPIDR-209ENST00000519141 SMARCA4P51532 1647 aa21.79■■□□□ 1.08
SPIDR-209ENST00000519141 WIZO95785 1651 aa21.67■■□□□ 1.06
SPIDR-209ENST00000519141 PEG3Q9GZU2 1588 aa21.52■■□□□ 1.04
SPIDR-209ENST00000519141 TOP2AP11388 1531 aaKnown RBP21.47■■□□□ 1.03
SPIDR-209ENST00000519141 SMARCA2P51531 1590 aa21.44■■□□□ 1.02
SPIDR-209ENST00000519141 ATAD2BQ9ULI0 1458 aa21.4■■□□□ 1.02
SPIDR-209ENST00000519141 NCAPD3P42695 1498 aa21.34■■□□□ 1.01
SPIDR-209ENST00000519141 BAZ1BQ9UIG0 1483 aaKnown RBP21.31■■□□□ 1
SPIDR-209ENST00000519141 HMGXB3Q12766 1538 aa21.25■□□□□ 0.99
SPIDR-209ENST00000519141 CCDC88BA6NC98 1476 aa21.19■□□□□ 0.98
SPIDR-209ENST00000519141 CHIC1Q5VXU3 224 aa21.04■□□□□ 0.96
SPIDR-209ENST00000519141 NESP48681 1621 aa20.9■□□□□ 0.94
SPIDR-209ENST00000519141 ERCC6Q03468 1493 aa20.86■□□□□ 0.93
SPIDR-209ENST00000519141 LAMC3Q9Y6N6 1575 aa20.79■□□□□ 0.92
SPIDR-209ENST00000519141 CFTRP13569 1480 aa20.75■□□□□ 0.91
SPIDR-209ENST00000519141 PRDM2Q13029 1718 aa20.74■□□□□ 0.91
SPIDR-209ENST00000519141 TRIM41Q8WV44 630 aa20.74■□□□□ 0.91
SPIDR-209ENST00000519141 ABCC8Q09428 1581 aa20.74■□□□□ 0.91
SPIDR-209ENST00000519141 CUX2O14529 1486 aa20.73■□□□□ 0.91
SPIDR-209ENST00000519141 CADPSQ9ULU8 1353 aa20.72■□□□□ 0.91
SPIDR-209ENST00000519141 PDS5BQ9NTI5 1447 aa20.67■□□□□ 0.9
SPIDR-209ENST00000519141 WRNQ14191 1432 aaPredicted RBP eCLIP20.62■□□□□ 0.89
SPIDR-209ENST00000519141 KIF21AQ7Z4S6 1674 aa20.62■□□□□ 0.89
SPIDR-209ENST00000519141 THOC2Q8NI27 1593 aaKnown RBP20.61■□□□□ 0.89
SPIDR-209ENST00000519141 SYNJ1O43426 1573 aa20.55■□□□□ 0.88
SPIDR-209ENST00000519141 TOP2BQ02880 1626 aa20.49■□□□□ 0.87
SPIDR-209ENST00000519141 BIVM-ERCC5R4GMW8 1640 aa20.49■□□□□ 0.87
SPIDR-209ENST00000519141 FANCD2Q9BXW9 1451 aa20.47■□□□□ 0.87
SPIDR-209ENST00000519141 MRC2Q9UBG0 1479 aa20.46■□□□□ 0.87
SPIDR-209ENST00000519141 CEP164Q9UPV0 1460 aa20.44■□□□□ 0.86
SPIDR-209ENST00000519141 CUX1P39880 1505 aa20.43■□□□□ 0.86
SPIDR-209ENST00000519141 DNAJC5Q9H3Z4 198 aa20.42■□□□□ 0.86
SPIDR-209ENST00000519141 WDR62O43379 1518 aa20.4■□□□□ 0.86
SPIDR-209ENST00000519141 FAM9AQ8IZU1 332 aaPredicted RBP20.34■□□□□ 0.85
SPIDR-209ENST00000519141 DNMBPQ6XZF7 1577 aa20.3■□□□□ 0.84
SPIDR-209ENST00000519141 EEA1Q15075 1411 aa20.3■□□□□ 0.84
SPIDR-209ENST00000519141 SOGA1O94964 1423 aa20.3■□□□□ 0.84
SPIDR-209ENST00000519141 URB2Q14146 1524 aaKnown RBP20.28■□□□□ 0.84
SPIDR-209ENST00000519141 TOPBP1Q92547 1522 aa20.24■□□□□ 0.83
SPIDR-209ENST00000519141 FGD5Q6ZNL6 1462 aa20.23■□□□□ 0.83
SPIDR-209ENST00000519141 RUSC2Q8N2Y8 1516 aa20.22■□□□□ 0.83
SPIDR-209ENST00000519141 LOC105371045A0A1W2PR82 267 aa20.2■□□□□ 0.82
SPIDR-209ENST00000519141 POLA1P09884 1462 aaPredicted RBP20.13■□□□□ 0.81
SPIDR-209ENST00000519141 CSRNP3Q8WYN3 585 aa20.13■□□□□ 0.81
SPIDR-209ENST00000519141 KIF27Q86VH2 1401 aa20.11■□□□□ 0.81
SPIDR-209ENST00000519141 KIF21BO75037 1637 aa20.06■□□□□ 0.8
SPIDR-209ENST00000519141 ABCA10Q8WWZ4 1543 aa20.05■□□□□ 0.8
SPIDR-209ENST00000519141 EHMT2Q96KQ7 1210 aa20.04■□□□□ 0.8
SPIDR-209ENST00000519141 RAD54L2Q9Y4B4 1467 aa20.04■□□□□ 0.8
SPIDR-209ENST00000519141 WDR97A6NE52 1622 aa20.04■□□□□ 0.8
SPIDR-209ENST00000519141 IFT140Q96RY7 1462 aa20.02■□□□□ 0.8
SPIDR-209ENST00000519141 GOLGA3Q08378 1498 aa20.02■□□□□ 0.79
SPIDR-209ENST00000519141 ZNF608Q9ULD9 1512 aaPredicted RBP19.98■□□□□ 0.79
SPIDR-209ENST00000519141 TARBP1Q13395 1621 aaKnown RBP19.96■□□□□ 0.79
SPIDR-209ENST00000519141 ERICH3Q5RHP9 1530 aa19.94■□□□□ 0.78
SPIDR-209ENST00000519141 PRXQ9BXM0 1461 aa19.94■□□□□ 0.78
SPIDR-209ENST00000519141 ABCA5Q8WWZ7 1642 aa19.92■□□□□ 0.78
SPIDR-209ENST00000519141 RAPGEF2Q9Y4G8 1499 aa19.91■□□□□ 0.78
SPIDR-209ENST00000519141 TNIKQ9UKE5 1360 aa19.9■□□□□ 0.78
SPIDR-209ENST00000519141 IGF1RP08069 1367 aa19.88■□□□□ 0.77
SPIDR-209ENST00000519141 UBTFP17480 764 aaKnown RBP19.88■□□□□ 0.77
SPIDR-209ENST00000519141 OSCARQ8IYS5 282 aa19.87■□□□□ 0.77
SPIDR-209ENST00000519141 EIF4G3O43432 1585 aaKnown RBP19.85■□□□□ 0.77
SPIDR-209ENST00000519141 GAPVD1Q14C86 1478 aa19.85■□□□□ 0.77
SPIDR-209ENST00000519141 CUL7Q14999 1698 aa19.85■□□□□ 0.77
SPIDR-209ENST00000519141 TDRD9Q8NDG6 1382 aaKnown RBP19.85■□□□□ 0.77
SPIDR-209ENST00000519141 AQRO60306 1485 aaKnown RBP eCLIP19.84■□□□□ 0.77
SPIDR-209ENST00000519141 CARMIL1Q5VZK9 1371 aa19.81■□□□□ 0.76
SPIDR-209ENST00000519141 CEP162Q5TB80 1403 aa19.81■□□□□ 0.76
SPIDR-209ENST00000519141 PBRM1Q86U86 1689 aa19.8■□□□□ 0.76
SPIDR-209ENST00000519141 GRIN2BQ13224 1484 aa19.71■□□□□ 0.75
SPIDR-209ENST00000519141 CLIP1P30622 1438 aa19.68■□□□□ 0.74
SPIDR-209ENST00000519141 ADAMTS12P58397 1594 aa19.68■□□□□ 0.74
SPIDR-209ENST00000519141 CHD1O14646 1710 aa19.65■□□□□ 0.74
SPIDR-209ENST00000519141 FBLN2P98095 1184 aa19.65■□□□□ 0.74
SPIDR-209ENST00000519141 CTTNBP2Q8WZ74 1663 aa19.64■□□□□ 0.73
SPIDR-209ENST00000519141 FHAD1B1AJZ9 1412 aa19.64■□□□□ 0.73
SPIDR-209ENST00000519141 SNAPC4Q5SXM2 1469 aa19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms