RNA–Protein interactions for RNA: ENST00000518780.1

CLN8-203, Transcript of CLN8, transmembrane ER and ERGIC protein, humanhuman

TSL 3

Gene CLN8, Length 507 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN8-203ENST00000518780 NISCHQ9Y2I1 1504 aa22.31■■□□□ 1.16
CLN8-203ENST00000518780 CCDC180Q9P1Z9 1646 aa19.64■□□□□ 0.73
CLN8-203ENST00000518780 ABCC9O60706 1549 aa18.9■□□□□ 0.62
CLN8-203ENST00000518780 ZCCHC6Q5VYS8 1495 aaKnown RBP18.64■□□□□ 0.57
CLN8-203ENST00000518780 DCAF1Q9Y4B6 1507 aa18.54■□□□□ 0.56
CLN8-203ENST00000518780 MYO15BQ96JP2 1530 aa18.53■□□□□ 0.56
CLN8-203ENST00000518780 DCAF8L2P0C7V8 631 aa18.5■□□□□ 0.55
CLN8-203ENST00000518780 NACADO15069 1562 aa18.47■□□□□ 0.55
CLN8-203ENST00000518780 RB1CC1Q8TDY2 1594 aa18.38■□□□□ 0.53
CLN8-203ENST00000518780 SCRIBQ14160 1630 aa17.88■□□□□ 0.45
CLN8-203ENST00000518780 UNC13AQ9UPW8 1703 aa17.76■□□□□ 0.43
CLN8-203ENST00000518780 SHROOM4Q9ULL8 1493 aa17.75■□□□□ 0.43
CLN8-203ENST00000518780 PABPN1Q86U42 306 aaKnown RBP eCLIP17.74■□□□□ 0.43
CLN8-203ENST00000518780 BICRAQ9NZM4 1560 aa17.74■□□□□ 0.43
CLN8-203ENST00000518780 AEBP2Q6ZN18 517 aaPredicted RBP17.59■□□□□ 0.41
CLN8-203ENST00000518780 CECR2Q9BXF3 1484 aa17.29■□□□□ 0.36
CLN8-203ENST00000518780 EIF4G1Q04637 1599 aaKnown RBP17.28■□□□□ 0.36
CLN8-203ENST00000518780 BAZ1AQ9NRL2 1556 aaPredicted RBP17.28■□□□□ 0.36
CLN8-203ENST00000518780 SMARCA4P51532 1647 aa17.18■□□□□ 0.34
CLN8-203ENST00000518780 MROH2BQ7Z745 1585 aa17.15■□□□□ 0.34
CLN8-203ENST00000518780 RSF1Q96T23 1441 aaPredicted RBP17.13■□□□□ 0.33
CLN8-203ENST00000518780 CC2D2AQ9P2K1 1620 aa17.09■□□□□ 0.33
CLN8-203ENST00000518780 SMARCA2P51531 1590 aa17.08■□□□□ 0.32
CLN8-203ENST00000518780 PEG3Q9GZU2 1588 aa17.07■□□□□ 0.32
CLN8-203ENST00000518780 ATAD2BQ9ULI0 1458 aa17.07■□□□□ 0.32
CLN8-203ENST00000518780 DNAJC5BQ9UF47 199 aa17.07■□□□□ 0.32
CLN8-203ENST00000518780 NCAPD3P42695 1498 aa17.06■□□□□ 0.32
CLN8-203ENST00000518780 HMGXB3Q12766 1538 aa16.96■□□□□ 0.31
CLN8-203ENST00000518780 BAZ1BQ9UIG0 1483 aaKnown RBP16.94■□□□□ 0.3
CLN8-203ENST00000518780 CHIC1Q5VXU3 224 aa16.94■□□□□ 0.3
CLN8-203ENST00000518780 WIZO95785 1651 aa16.91■□□□□ 0.3
CLN8-203ENST00000518780 SUPT5HO00267 1087 aaKnown RBP16.91■□□□□ 0.3
CLN8-203ENST00000518780 TOP2AP11388 1531 aaKnown RBP16.84■□□□□ 0.29
CLN8-203ENST00000518780 CCDC88BA6NC98 1476 aa16.66■□□□□ 0.26
CLN8-203ENST00000518780 CADPSQ9ULU8 1353 aa16.59■□□□□ 0.25
CLN8-203ENST00000518780 CFTRP13569 1480 aa16.53■□□□□ 0.24
CLN8-203ENST00000518780 LAMC3Q9Y6N6 1575 aa16.51■□□□□ 0.23
CLN8-203ENST00000518780 PDS5BQ9NTI5 1447 aa16.45■□□□□ 0.22
CLN8-203ENST00000518780 NESP48681 1621 aa16.42■□□□□ 0.22
CLN8-203ENST00000518780 FANCD2Q9BXW9 1451 aa16.34■□□□□ 0.21
CLN8-203ENST00000518780 ERCC6Q03468 1493 aa16.31■□□□□ 0.2
CLN8-203ENST00000518780 CEP164Q9UPV0 1460 aa16.29■□□□□ 0.2
CLN8-203ENST00000518780 PRDM2Q13029 1718 aa16.25■□□□□ 0.19
CLN8-203ENST00000518780 ABCC8Q09428 1581 aa16.21■□□□□ 0.19
CLN8-203ENST00000518780 MRC2Q9UBG0 1479 aa16.2■□□□□ 0.18
CLN8-203ENST00000518780 KIF21AQ7Z4S6 1674 aa16.17■□□□□ 0.18
CLN8-203ENST00000518780 WRNQ14191 1432 aaPredicted RBP eCLIP16.15■□□□□ 0.18
CLN8-203ENST00000518780 WDR62O43379 1518 aa16.12■□□□□ 0.17
CLN8-203ENST00000518780 URB2Q14146 1524 aaKnown RBP16.12■□□□□ 0.17
CLN8-203ENST00000518780 DNMBPQ6XZF7 1577 aa16.1■□□□□ 0.17
CLN8-203ENST00000518780 TOPBP1Q92547 1522 aa16.09■□□□□ 0.17
CLN8-203ENST00000518780 THOC2Q8NI27 1593 aaKnown RBP16.09■□□□□ 0.17
CLN8-203ENST00000518780 CUX2O14529 1486 aa16.07■□□□□ 0.16
CLN8-203ENST00000518780 CUX1P39880 1505 aa16.06■□□□□ 0.16
CLN8-203ENST00000518780 TOP2BQ02880 1626 aa16.03■□□□□ 0.16
CLN8-203ENST00000518780 TRIM41Q8WV44 630 aa16.02■□□□□ 0.16
CLN8-203ENST00000518780 BIVM-ERCC5R4GMW8 1640 aa15.99■□□□□ 0.15
CLN8-203ENST00000518780 SYNJ1O43426 1573 aa15.99■□□□□ 0.15
CLN8-203ENST00000518780 POLA1P09884 1462 aaPredicted RBP15.98■□□□□ 0.15
CLN8-203ENST00000518780 FGD5Q6ZNL6 1462 aa15.97■□□□□ 0.15
CLN8-203ENST00000518780 IFT140Q96RY7 1462 aa15.97■□□□□ 0.15
CLN8-203ENST00000518780 SOGA1O94964 1423 aa15.97■□□□□ 0.15
CLN8-203ENST00000518780 ABCA10Q8WWZ4 1543 aa15.89■□□□□ 0.13
CLN8-203ENST00000518780 RAD54L2Q9Y4B4 1467 aa15.88■□□□□ 0.13
CLN8-203ENST00000518780 TARBP1Q13395 1621 aaKnown RBP15.86■□□□□ 0.13
CLN8-203ENST00000518780 WDR97A6NE52 1622 aa15.84■□□□□ 0.13
CLN8-203ENST00000518780 KIF27Q86VH2 1401 aa15.82■□□□□ 0.12
CLN8-203ENST00000518780 TDRD9Q8NDG6 1382 aaKnown RBP15.81■□□□□ 0.12
CLN8-203ENST00000518780 ZNF608Q9ULD9 1512 aaPredicted RBP15.78■□□□□ 0.12
CLN8-203ENST00000518780 GAPVD1Q14C86 1478 aa15.78■□□□□ 0.12
CLN8-203ENST00000518780 EEA1Q15075 1411 aa15.77■□□□□ 0.12
CLN8-203ENST00000518780 AQRO60306 1485 aaKnown RBP eCLIP15.77■□□□□ 0.11
CLN8-203ENST00000518780 GRIN2BQ13224 1484 aa15.75■□□□□ 0.11
CLN8-203ENST00000518780 ABCA5Q8WWZ7 1642 aa15.72■□□□□ 0.11
CLN8-203ENST00000518780 IGF1RP08069 1367 aa15.71■□□□□ 0.11
CLN8-203ENST00000518780 EIF4G3O43432 1585 aaKnown RBP15.7■□□□□ 0.1
CLN8-203ENST00000518780 ERICH3Q5RHP9 1530 aa15.7■□□□□ 0.1
CLN8-203ENST00000518780 CSRNP3Q8WYN3 585 aa15.68■□□□□ 0.1
CLN8-203ENST00000518780 MAGI1Q96QZ7 1491 aaPredicted RBP15.67■□□□□ 0.1
CLN8-203ENST00000518780 RUSC2Q8N2Y8 1516 aa15.64■□□□□ 0.09
CLN8-203ENST00000518780 FHAD1B1AJZ9 1412 aa15.64■□□□□ 0.09
CLN8-203ENST00000518780 CARMIL1Q5VZK9 1371 aa15.62■□□□□ 0.09
CLN8-203ENST00000518780 SNAPC4Q5SXM2 1469 aa15.61■□□□□ 0.09
CLN8-203ENST00000518780 CHMP7Q8WUX9 453 aaPredicted RBP15.61■□□□□ 0.09
CLN8-203ENST00000518780 SYNJ2O15056 1496 aa15.59■□□□□ 0.09
CLN8-203ENST00000518780 FAM9AQ8IZU1 332 aaPredicted RBP15.58■□□□□ 0.08
CLN8-203ENST00000518780 PRXQ9BXM0 1461 aa15.58■□□□□ 0.08
CLN8-203ENST00000518780 CUL7Q14999 1698 aa15.57■□□□□ 0.08
CLN8-203ENST00000518780 PBRM1Q86U86 1689 aa15.57■□□□□ 0.08
CLN8-203ENST00000518780 RAPGEF2Q9Y4G8 1499 aa15.55■□□□□ 0.08
CLN8-203ENST00000518780 ADAMTS12P58397 1594 aa15.54■□□□□ 0.08
CLN8-203ENST00000518780 FBLN2P98095 1184 aa15.54■□□□□ 0.08
CLN8-203ENST00000518780 OSCARQ8IYS5 282 aa15.51■□□□□ 0.07
CLN8-203ENST00000518780 GRIN2AQ12879 1464 aa15.51■□□□□ 0.07
CLN8-203ENST00000518780 KIF21BO75037 1637 aa15.46■□□□□ 0.07
CLN8-203ENST00000518780 NUP160Q12769 1436 aa15.45■□□□□ 0.06
CLN8-203ENST00000518780 GOLGA3Q08378 1498 aa15.44■□□□□ 0.06
CLN8-203ENST00000518780 KIAA0586Q9BVV6 1533 aa15.41■□□□□ 0.06
CLN8-203ENST00000518780 UBTFP17480 764 aaKnown RBP15.4■□□□□ 0.06
CLN8-203ENST00000518780 CHD1O14646 1710 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms