RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 AEBP2Q6ZN18 517 aaPredicted RBP20.33■□□□□ 0.85
LIMCH1-222ENST00000515847 CHIC1Q5VXU3 224 aa19.31■□□□□ 0.68
LIMCH1-222ENST00000515847 NISCHQ9Y2I1 1504 aa18.54■□□□□ 0.56
LIMCH1-222ENST00000515847 SENP3Q9H4L4 574 aaPredicted RBP17.33■□□□□ 0.36
LIMCH1-222ENST00000515847 PHF23Q9BUL5 403 aaPredicted RBP17.11■□□□□ 0.33
LIMCH1-222ENST00000515847 CCDC180Q9P1Z9 1646 aa16.48■□□□□ 0.23
LIMCH1-222ENST00000515847 FOXD1Q16676 465 aa16.16■□□□□ 0.18
LIMCH1-222ENST00000515847 ABCC9O60706 1549 aa16.05■□□□□ 0.16
LIMCH1-222ENST00000515847 ZCCHC6Q5VYS8 1495 aaKnown RBP15.48■□□□□ 0.07
LIMCH1-222ENST00000515847 RB1CC1Q8TDY2 1594 aa15.46■□□□□ 0.07
LIMCH1-222ENST00000515847 NACADO15069 1562 aa15.45■□□□□ 0.06
LIMCH1-222ENST00000515847 PLPPR3Q6T4P5 718 aa15.44■□□□□ 0.06
LIMCH1-222ENST00000515847 DCAF8L2P0C7V8 631 aa15.43■□□□□ 0.06
LIMCH1-222ENST00000515847 MYO15BQ96JP2 1530 aa15.37■□□□□ 0.05
LIMCH1-222ENST00000515847 DCAF1Q9Y4B6 1507 aa15.34■□□□□ 0.05
LIMCH1-222ENST00000515847 UNC13AQ9UPW8 1703 aa15.15■□□□□ 0.02
LIMCH1-222ENST00000515847 PPP6R1Q9UPN7 881 aa15.13■□□□□ 0.01
LIMCH1-222ENST00000515847 MSH5O43196 834 aa15.1■□□□□ 0.01
LIMCH1-222ENST00000515847 PIAS4Q8N2W9 510 aaPredicted RBP15.1■□□□□ 0.01
LIMCH1-222ENST00000515847 ADRA2BP18089 450 aa15.07■□□□□ 0
LIMCH1-222ENST00000515847 SCRIBQ14160 1630 aa15.06■□□□□ 0
LIMCH1-222ENST00000515847 BICRAQ9NZM4 1560 aa15.01□□□□□ -0.01
LIMCH1-222ENST00000515847 PABPN1Q86U42 306 aaKnown RBP eCLIP14.99□□□□□ -0.01
LIMCH1-222ENST00000515847 SHROOM4Q9ULL8 1493 aa14.83□□□□□ -0.03
LIMCH1-222ENST00000515847 POTEDQ86YR6 584 aa14.72□□□□□ -0.05
LIMCH1-222ENST00000515847 DNAJC5BQ9UF47 199 aa14.64□□□□□ -0.07
LIMCH1-222ENST00000515847 EIF4G1Q04637 1599 aaKnown RBP14.6□□□□□ -0.07
LIMCH1-222ENST00000515847 CC2D2AQ9P2K1 1620 aa14.52□□□□□ -0.08
LIMCH1-222ENST00000515847 CECR2Q9BXF3 1484 aa14.44□□□□□ -0.1
LIMCH1-222ENST00000515847 SMARCA4P51532 1647 aa14.4□□□□□ -0.1
LIMCH1-222ENST00000515847 BAZ1AQ9NRL2 1556 aaPredicted RBP14.37□□□□□ -0.11
LIMCH1-222ENST00000515847 MROH2BQ7Z745 1585 aa14.3□□□□□ -0.12
LIMCH1-222ENST00000515847 ATAD2BQ9ULI0 1458 aa14.28□□□□□ -0.12
LIMCH1-222ENST00000515847 SMARCA2P51531 1590 aa14.27□□□□□ -0.12
LIMCH1-222ENST00000515847 NCAPD3P42695 1498 aa14.25□□□□□ -0.13
LIMCH1-222ENST00000515847 PEG3Q9GZU2 1588 aa14.24□□□□□ -0.13
LIMCH1-222ENST00000515847 HMGXB3Q12766 1538 aa14.21□□□□□ -0.13
LIMCH1-222ENST00000515847 BAZ1BQ9UIG0 1483 aaKnown RBP14.18□□□□□ -0.14
LIMCH1-222ENST00000515847 WIZO95785 1651 aa14.17□□□□□ -0.14
LIMCH1-222ENST00000515847 RSF1Q96T23 1441 aaPredicted RBP14.15□□□□□ -0.14
LIMCH1-222ENST00000515847 TOP2AP11388 1531 aaKnown RBP14.01□□□□□ -0.17
LIMCH1-222ENST00000515847 NESP48681 1621 aa13.92□□□□□ -0.18
LIMCH1-222ENST00000515847 LAMC3Q9Y6N6 1575 aa13.88□□□□□ -0.19
LIMCH1-222ENST00000515847 MAPK8IP2Q13387 824 aaPredicted RBP13.85□□□□□ -0.19
LIMCH1-222ENST00000515847 CADPSQ9ULU8 1353 aa13.83□□□□□ -0.19
LIMCH1-222ENST00000515847 CCDC88BA6NC98 1476 aa13.83□□□□□ -0.2
LIMCH1-222ENST00000515847 SUPT5HO00267 1087 aaKnown RBP13.83□□□□□ -0.2
LIMCH1-222ENST00000515847 ERCC6Q03468 1493 aa13.82□□□□□ -0.2
LIMCH1-222ENST00000515847 SCAF1Q9H7N4 1312 aaKnown RBP13.79□□□□□ -0.2
LIMCH1-222ENST00000515847 CFTRP13569 1480 aa13.78□□□□□ -0.2
LIMCH1-222ENST00000515847 KIF21AQ7Z4S6 1674 aa13.78□□□□□ -0.2
LIMCH1-222ENST00000515847 PDS5BQ9NTI5 1447 aa13.76□□□□□ -0.21
LIMCH1-222ENST00000515847 DMRT2Q9Y5R5 561 aa13.75□□□□□ -0.21
LIMCH1-222ENST00000515847 PRDM2Q13029 1718 aa13.72□□□□□ -0.21
LIMCH1-222ENST00000515847 THOC2Q8NI27 1593 aaKnown RBP13.71□□□□□ -0.21
LIMCH1-222ENST00000515847 FANCD2Q9BXW9 1451 aa13.7□□□□□ -0.22
LIMCH1-222ENST00000515847 CEP164Q9UPV0 1460 aa13.67□□□□□ -0.22
LIMCH1-222ENST00000515847 CUX2O14529 1486 aa13.65□□□□□ -0.22
LIMCH1-222ENST00000515847 MRC2Q9UBG0 1479 aa13.65□□□□□ -0.22
LIMCH1-222ENST00000515847 WDR62O43379 1518 aa13.61□□□□□ -0.23
LIMCH1-222ENST00000515847 URB2Q14146 1524 aaKnown RBP13.57□□□□□ -0.24
LIMCH1-222ENST00000515847 PPP4R3CPQ6ZMV5 832 aa13.54□□□□□ -0.24
LIMCH1-222ENST00000515847 DNMBPQ6XZF7 1577 aa13.49□□□□□ -0.25
LIMCH1-222ENST00000515847 TOPBP1Q92547 1522 aa13.49□□□□□ -0.25
LIMCH1-222ENST00000515847 ABCC8Q09428 1581 aa13.45□□□□□ -0.26
LIMCH1-222ENST00000515847 CUX1P39880 1505 aa13.43□□□□□ -0.26
LIMCH1-222ENST00000515847 POLA1P09884 1462 aaPredicted RBP13.38□□□□□ -0.27
LIMCH1-222ENST00000515847 IFT140Q96RY7 1462 aa13.38□□□□□ -0.27
LIMCH1-222ENST00000515847 FGD5Q6ZNL6 1462 aa13.36□□□□□ -0.27
LIMCH1-222ENST00000515847 WRNQ14191 1432 aaPredicted RBP eCLIP13.35□□□□□ -0.27
LIMCH1-222ENST00000515847 TARBP1Q13395 1621 aaKnown RBP13.35□□□□□ -0.27
LIMCH1-222ENST00000515847 SYNJ1O43426 1573 aa13.34□□□□□ -0.27
LIMCH1-222ENST00000515847 BIVM-ERCC5R4GMW8 1640 aa13.33□□□□□ -0.28
LIMCH1-222ENST00000515847 RAD54L2Q9Y4B4 1467 aa13.33□□□□□ -0.28
LIMCH1-222ENST00000515847 ZNF608Q9ULD9 1512 aaPredicted RBP13.33□□□□□ -0.28
LIMCH1-222ENST00000515847 TOP2BQ02880 1626 aa13.32□□□□□ -0.28
LIMCH1-222ENST00000515847 SOGA1O94964 1423 aa13.3□□□□□ -0.28
LIMCH1-222ENST00000515847 EIF4G3O43432 1585 aaKnown RBP13.29□□□□□ -0.28
LIMCH1-222ENST00000515847 WDR97A6NE52 1622 aa13.28□□□□□ -0.28
LIMCH1-222ENST00000515847 CNKSR2Q8WXI2 1034 aa13.27□□□□□ -0.29
LIMCH1-222ENST00000515847 HOXD11P31277 338 aaPredicted RBP13.25□□□□□ -0.29
LIMCH1-222ENST00000515847 AQRO60306 1485 aaKnown RBP eCLIP13.24□□□□□ -0.29
LIMCH1-222ENST00000515847 ABCA10Q8WWZ4 1543 aa13.23□□□□□ -0.29
LIMCH1-222ENST00000515847 TDRD9Q8NDG6 1382 aaKnown RBP13.22□□□□□ -0.29
LIMCH1-222ENST00000515847 DCAF8L1A6NGE4 600 aa13.19□□□□□ -0.3
LIMCH1-222ENST00000515847 ABCA5Q8WWZ7 1642 aa13.19□□□□□ -0.3
LIMCH1-222ENST00000515847 PBRM1Q86U86 1689 aa13.17□□□□□ -0.3
LIMCH1-222ENST00000515847 GAPVD1Q14C86 1478 aa13.16□□□□□ -0.3
LIMCH1-222ENST00000515847 RNF216Q9NWF9 866 aaPredicted RBP13.15□□□□□ -0.3
LIMCH1-222ENST00000515847 GRIN2BQ13224 1484 aa13.15□□□□□ -0.3
LIMCH1-222ENST00000515847 SNAPC4Q5SXM2 1469 aa13.15□□□□□ -0.3
LIMCH1-222ENST00000515847 CHD1O14646 1710 aa13.12□□□□□ -0.31
LIMCH1-222ENST00000515847 MAGI1Q96QZ7 1491 aaPredicted RBP13.11□□□□□ -0.31
LIMCH1-222ENST00000515847 DNAJC5Q9H3Z4 198 aa13.11□□□□□ -0.31
LIMCH1-222ENST00000515847 ADAMTS12P58397 1594 aa13.07□□□□□ -0.32
LIMCH1-222ENST00000515847 ERICH3Q5RHP9 1530 aa13.07□□□□□ -0.32
LIMCH1-222ENST00000515847 SYNJ2O15056 1496 aa13.06□□□□□ -0.32
LIMCH1-222ENST00000515847 KIF27Q86VH2 1401 aa13.05□□□□□ -0.32
LIMCH1-222ENST00000515847 FBLN2P98095 1184 aa13.05□□□□□ -0.32
LIMCH1-222ENST00000515847 OSCARQ8IYS5 282 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms