RNA–Protein interactions for RNA: ENST00000515710.1

TRIO-223, Transcript of trio Rho guanine nucleotide exchange factor, human

TSL 3

Gene TRIO, Length 1,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIO-223	ENST00000515710	NISCH	Q9Y2I1	1504 aa		45.42	■■■■■ 4.86
TRIO-223	ENST00000515710	CCDC180	Q9P1Z9	1646 aa		39.57	■■■■□ 3.93
TRIO-223	ENST00000515710	ZCCHC6	Q5VYS8	1495 aa	Known RBP	38.15	■■■■□ 3.7
TRIO-223	ENST00000515710	DCAF1	Q9Y4B6	1507 aa		37.61	■■■■□ 3.61
TRIO-223	ENST00000515710	DCAF8L2	P0C7V8	631 aa		37.48	■■■■□ 3.59
TRIO-223	ENST00000515710	ABCC9	O60706	1549 aa		37.35	■■■■□ 3.57
TRIO-223	ENST00000515710	MYO15B	Q96JP2	1530 aa		37.15	■■■■□ 3.54
TRIO-223	ENST00000515710	SHROOM4	Q9ULL8	1493 aa		37.01	■■■■□ 3.52
TRIO-223	ENST00000515710	NACAD	O15069	1562 aa		36.88	■■■■□ 3.5
TRIO-223	ENST00000515710	RB1CC1	Q8TDY2	1594 aa		36.54	■■■■□ 3.44
TRIO-223	ENST00000515710	SCRIB	Q14160	1630 aa		36.34	■■■■□ 3.41
TRIO-223	ENST00000515710	UNC13A	Q9UPW8	1703 aa		35.7	■■■■□ 3.31
TRIO-223	ENST00000515710	SUPT5H	O00267	1087 aa	Known RBP	35.69	■■■■□ 3.3
TRIO-223	ENST00000515710	BICRA	Q9NZM4	1560 aa		35.39	■■■■□ 3.26
TRIO-223	ENST00000515710	RSF1	Q96T23	1441 aa	Predicted RBP	35.25	■■■■□ 3.23
TRIO-223	ENST00000515710	CECR2	Q9BXF3	1484 aa		35.25	■■■■□ 3.23
TRIO-223	ENST00000515710	PABPN1	Q86U42	306 aa	Known RBP eCLIP	35.24	■■■■□ 3.23
TRIO-223	ENST00000515710	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	35.08	■■■■□ 3.21
TRIO-223	ENST00000515710	MROH2B	Q7Z745	1585 aa		35.06	■■■■□ 3.2
TRIO-223	ENST00000515710	SMARCA4	P51532	1647 aa		34.88	■■■■□ 3.17
TRIO-223	ENST00000515710	WIZ	O95785	1651 aa		34.76	■■■■□ 3.15
TRIO-223	ENST00000515710	PEG3	Q9GZU2	1588 aa		34.49	■■■■□ 3.11
TRIO-223	ENST00000515710	TOP2A	P11388	1531 aa	Known RBP	34.44	■■■■□ 3.1
TRIO-223	ENST00000515710	EIF4G1	Q04637	1599 aa	Known RBP	34.33	■■■■□ 3.09
TRIO-223	ENST00000515710	ATAD2B	Q9ULI0	1458 aa		34.33	■■■■□ 3.09
TRIO-223	ENST00000515710	SMARCA2	P51531	1590 aa		34.32	■■■■□ 3.08
TRIO-223	ENST00000515710	CHIC1	Q5VXU3	224 aa		34.23	■■■■□ 3.07
TRIO-223	ENST00000515710	BAZ1B	Q9UIG0	1483 aa	Known RBP	34.12	■■■■□ 3.05
TRIO-223	ENST00000515710	CCDC88B	A6NC98	1476 aa		34.09	■■■■□ 3.05
TRIO-223	ENST00000515710	NCAPD3	P42695	1498 aa		34.05	■■■■□ 3.04
TRIO-223	ENST00000515710	HMGXB3	Q12766	1538 aa		33.98	■■■■□ 3.03
TRIO-223	ENST00000515710	CC2D2A	Q9P2K1	1620 aa		33.8	■■■■□ 3
TRIO-223	ENST00000515710	TRIM41	Q8WV44	630 aa		33.6	■■■□□ 2.97
TRIO-223	ENST00000515710	ABCC8	Q09428	1581 aa		33.33	■■■□□ 2.93
TRIO-223	ENST00000515710	CFTR	P13569	1480 aa		33.29	■■■□□ 2.92
TRIO-223	ENST00000515710	WRN	Q14191	1432 aa	Predicted RBP eCLIP	33.19	■■■□□ 2.9
TRIO-223	ENST00000515710	CADPS	Q9ULU8	1353 aa		33.18	■■■□□ 2.9
TRIO-223	ENST00000515710	PRDM2	Q13029	1718 aa		33.06	■■■□□ 2.88
TRIO-223	ENST00000515710	SYNJ1	O43426	1573 aa		32.99	■■■□□ 2.87
TRIO-223	ENST00000515710	FAM9A	Q8IZU1	332 aa	Predicted RBP	32.92	■■■□□ 2.86
TRIO-223	ENST00000515710	TOP2B	Q02880	1626 aa		32.9	■■■□□ 2.86
TRIO-223	ENST00000515710	DNAJC5B	Q9UF47	199 aa		32.89	■■■□□ 2.85
TRIO-223	ENST00000515710	LOC105371045	A0A1W2PR82	267 aa		32.88	■■■□□ 2.85
TRIO-223	ENST00000515710	LAMC3	Q9Y6N6	1575 aa		32.87	■■■□□ 2.85
TRIO-223	ENST00000515710	BIVM-ERCC5	R4GMW8	1640 aa		32.85	■■■□□ 2.85
TRIO-223	ENST00000515710	EEA1	Q15075	1411 aa		32.8	■■■□□ 2.84
TRIO-223	ENST00000515710	NES	P48681	1621 aa		32.79	■■■□□ 2.84
TRIO-223	ENST00000515710	FANCD2	Q9BXW9	1451 aa		32.78	■■■□□ 2.84
TRIO-223	ENST00000515710	CUX1	P39880	1505 aa		32.78	■■■□□ 2.84
TRIO-223	ENST00000515710	SOGA1	O94964	1423 aa		32.76	■■■□□ 2.83
TRIO-223	ENST00000515710	PDS5B	Q9NTI5	1447 aa		32.64	■■■□□ 2.82
TRIO-223	ENST00000515710	RUSC2	Q8N2Y8	1516 aa		32.62	■■■□□ 2.81
TRIO-223	ENST00000515710	CSRNP3	Q8WYN3	585 aa		32.6	■■■□□ 2.81
TRIO-223	ENST00000515710	CEP164	Q9UPV0	1460 aa		32.58	■■■□□ 2.81
TRIO-223	ENST00000515710	DNMBP	Q6XZF7	1577 aa		32.5	■■■□□ 2.79
TRIO-223	ENST00000515710	TOPBP1	Q92547	1522 aa		32.43	■■■□□ 2.78
TRIO-223	ENST00000515710	FGD5	Q6ZNL6	1462 aa		32.42	■■■□□ 2.78
TRIO-223	ENST00000515710	EHMT2	Q96KQ7	1210 aa		32.4	■■■□□ 2.78
TRIO-223	ENST00000515710	KIF21A	Q7Z4S6	1674 aa		32.37	■■■□□ 2.77
TRIO-223	ENST00000515710	KIF27	Q86VH2	1401 aa		32.37	■■■□□ 2.77
TRIO-223	ENST00000515710	URB2	Q14146	1524 aa	Known RBP	32.35	■■■□□ 2.77
TRIO-223	ENST00000515710	KIF21B	O75037	1637 aa		32.3	■■■□□ 2.76
TRIO-223	ENST00000515710	GOLGA3	Q08378	1498 aa		32.3	■■■□□ 2.76
TRIO-223	ENST00000515710	POLA1	P09884	1462 aa	Predicted RBP	32.27	■■■□□ 2.76
TRIO-223	ENST00000515710	TNIK	Q9UKE5	1360 aa		32.24	■■■□□ 2.75
TRIO-223	ENST00000515710	CUX2	O14529	1486 aa		32.23	■■■□□ 2.75
TRIO-223	ENST00000515710	MRC2	Q9UBG0	1479 aa		32.18	■■■□□ 2.74
TRIO-223	ENST00000515710	ABCA10	Q8WWZ4	1543 aa		32.17	■■■□□ 2.74
TRIO-223	ENST00000515710	UBTF	P17480	764 aa	Known RBP	32.16	■■■□□ 2.74
TRIO-223	ENST00000515710	PRX	Q9BXM0	1461 aa		32.15	■■■□□ 2.74
TRIO-223	ENST00000515710	RAD54L2	Q9Y4B4	1467 aa		32.15	■■■□□ 2.74
TRIO-223	ENST00000515710	ERICH3	Q5RHP9	1530 aa		32.1	■■■□□ 2.73
TRIO-223	ENST00000515710	RAPGEF2	Q9Y4G8	1499 aa		32.08	■■■□□ 2.73
TRIO-223	ENST00000515710	IGF1R	P08069	1367 aa		32.07	■■■□□ 2.72
TRIO-223	ENST00000515710	ERCC6	Q03468	1493 aa		32.04	■■■□□ 2.72
TRIO-223	ENST00000515710	CEP162	Q5TB80	1403 aa		32.01	■■■□□ 2.72
TRIO-223	ENST00000515710	WDR97	A6NE52	1622 aa		32	■■■□□ 2.71
TRIO-223	ENST00000515710	WDR62	O43379	1518 aa		32	■■■□□ 2.71
TRIO-223	ENST00000515710	TARBP1	Q13395	1621 aa	Known RBP	31.92	■■■□□ 2.7
TRIO-223	ENST00000515710	CARMIL1	Q5VZK9	1371 aa		31.92	■■■□□ 2.7
TRIO-223	ENST00000515710	ABCA5	Q8WWZ7	1642 aa		31.86	■■■□□ 2.69
TRIO-223	ENST00000515710	THOC2	Q8NI27	1593 aa	Known RBP	31.85	■■■□□ 2.69
TRIO-223	ENST00000515710	TDRD9	Q8NDG6	1382 aa	Known RBP	31.84	■■■□□ 2.69
TRIO-223	ENST00000515710	GAPVD1	Q14C86	1478 aa		31.83	■■■□□ 2.69
TRIO-223	ENST00000515710	IFT140	Q96RY7	1462 aa		31.82	■■■□□ 2.68
TRIO-223	ENST00000515710	CUL7	Q14999	1698 aa		31.79	■■■□□ 2.68
TRIO-223	ENST00000515710	CLIP1	P30622	1438 aa		31.77	■■■□□ 2.68
TRIO-223	ENST00000515710	AQR	O60306	1485 aa	Known RBP eCLIP	31.63	■■■□□ 2.65
TRIO-223	ENST00000515710	GRIN2B	Q13224	1484 aa		31.59	■■■□□ 2.65
TRIO-223	ENST00000515710	PBRM1	Q86U86	1689 aa		31.59	■■■□□ 2.65
TRIO-223	ENST00000515710	ZNF608	Q9ULD9	1512 aa	Predicted RBP	31.57	■■■□□ 2.64
TRIO-223	ENST00000515710	RANGAP1	P46060	587 aa	Predicted RBP	31.55	■■■□□ 2.64
TRIO-223	ENST00000515710	FHAD1	B1AJZ9	1412 aa		31.52	■■■□□ 2.64
TRIO-223	ENST00000515710	VPS8	Q8N3P4	1428 aa		31.51	■■■□□ 2.63
TRIO-223	ENST00000515710	TRIM26	Q12899	539 aa	Predicted RBP	31.49	■■■□□ 2.63
TRIO-223	ENST00000515710	EIF4G3	O43432	1585 aa	Known RBP	31.46	■■■□□ 2.63
TRIO-223	ENST00000515710	ADAMTS12	P58397	1594 aa		31.44	■■■□□ 2.62
TRIO-223	ENST00000515710	ARAP1	Q96P48	1450 aa		31.43	■■■□□ 2.62
TRIO-223	ENST00000515710	ARHGAP35	Q9NRY4	1499 aa		31.43	■■■□□ 2.62
TRIO-223	ENST00000515710	PCGF6	Q9BYE7	350 aa		31.42	■■■□□ 2.62

Retrieved 100 of 20,778 RNA–protein pairs in 175.5 ms