RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 NISCHQ9Y2I1 1504 aa28.03■■■□□ 2.08
VCAN-212ENST00000515397 CCDC180Q9P1Z9 1646 aa24.82■■□□□ 1.56
VCAN-212ENST00000515397 ABCC9O60706 1549 aa24.76■■□□□ 1.55
VCAN-212ENST00000515397 DCAF8L2P0C7V8 631 aa23.81■■□□□ 1.4
VCAN-212ENST00000515397 RB1CC1Q8TDY2 1594 aa23.54■■□□□ 1.36
VCAN-212ENST00000515397 NACADO15069 1562 aa23.46■■□□□ 1.35
VCAN-212ENST00000515397 ZCCHC6Q5VYS8 1495 aaKnown RBP23.27■■□□□ 1.32
VCAN-212ENST00000515397 PABPN1Q86U42 306 aaKnown RBP eCLIP23.24■■□□□ 1.31
VCAN-212ENST00000515397 MYO15BQ96JP2 1530 aa23.18■■□□□ 1.3
VCAN-212ENST00000515397 DCAF1Q9Y4B6 1507 aa23.05■■□□□ 1.28
VCAN-212ENST00000515397 DNAJC5BQ9UF47 199 aa23.02■■□□□ 1.28
VCAN-212ENST00000515397 UNC13AQ9UPW8 1703 aa23■■□□□ 1.27
VCAN-212ENST00000515397 BICRAQ9NZM4 1560 aa22.9■■□□□ 1.26
VCAN-212ENST00000515397 SCRIBQ14160 1630 aa22.85■■□□□ 1.25
VCAN-212ENST00000515397 SHROOM4Q9ULL8 1493 aa22.44■■□□□ 1.18
VCAN-212ENST00000515397 EIF4G1Q04637 1599 aaKnown RBP22.29■■□□□ 1.16
VCAN-212ENST00000515397 CC2D2AQ9P2K1 1620 aa22.28■■□□□ 1.16
VCAN-212ENST00000515397 CECR2Q9BXF3 1484 aa22.21■■□□□ 1.15
VCAN-212ENST00000515397 SMARCA4P51532 1647 aa21.76■■□□□ 1.07
VCAN-212ENST00000515397 ATAD2BQ9ULI0 1458 aa21.74■■□□□ 1.07
VCAN-212ENST00000515397 NCAPD3P42695 1498 aa21.71■■□□□ 1.07
VCAN-212ENST00000515397 BAZ1AQ9NRL2 1556 aaPredicted RBP21.69■■□□□ 1.06
VCAN-212ENST00000515397 MROH2BQ7Z745 1585 aa21.67■■□□□ 1.06
VCAN-212ENST00000515397 SMARCA2P51531 1590 aa21.61■■□□□ 1.05
VCAN-212ENST00000515397 BAZ1BQ9UIG0 1483 aaKnown RBP21.54■■□□□ 1.04
VCAN-212ENST00000515397 HMGXB3Q12766 1538 aa21.5■■□□□ 1.03
VCAN-212ENST00000515397 PEG3Q9GZU2 1588 aa21.46■■□□□ 1.03
VCAN-212ENST00000515397 WIZO95785 1651 aa21.4■■□□□ 1.02
VCAN-212ENST00000515397 NESP48681 1621 aa21.38■■□□□ 1.01
VCAN-212ENST00000515397 RSF1Q96T23 1441 aaPredicted RBP21.37■■□□□ 1.01
VCAN-212ENST00000515397 ERCC6Q03468 1493 aa21.3■■□□□ 1
VCAN-212ENST00000515397 CADPSQ9ULU8 1353 aa21.13■□□□□ 0.97
VCAN-212ENST00000515397 LAMC3Q9Y6N6 1575 aa21.1■□□□□ 0.97
VCAN-212ENST00000515397 TOP2AP11388 1531 aaKnown RBP21.09■□□□□ 0.97
VCAN-212ENST00000515397 DNAJC5Q9H3Z4 198 aa21.08■□□□□ 0.97
VCAN-212ENST00000515397 PDS5BQ9NTI5 1447 aa21.05■□□□□ 0.96
VCAN-212ENST00000515397 CUX2O14529 1486 aa21.01■□□□□ 0.95
VCAN-212ENST00000515397 KIF21AQ7Z4S6 1674 aa20.98■□□□□ 0.95
VCAN-212ENST00000515397 CCDC88BA6NC98 1476 aa20.95■□□□□ 0.94
VCAN-212ENST00000515397 CFTRP13569 1480 aa20.92■□□□□ 0.94
VCAN-212ENST00000515397 THOC2Q8NI27 1593 aaKnown RBP20.92■□□□□ 0.94
VCAN-212ENST00000515397 SUPT5HO00267 1087 aaKnown RBP20.91■□□□□ 0.94
VCAN-212ENST00000515397 FANCD2Q9BXW9 1451 aa20.88■□□□□ 0.93
VCAN-212ENST00000515397 MRC2Q9UBG0 1479 aa20.83■□□□□ 0.93
VCAN-212ENST00000515397 CEP164Q9UPV0 1460 aa20.83■□□□□ 0.93
VCAN-212ENST00000515397 WDR62O43379 1518 aa20.73■□□□□ 0.91
VCAN-212ENST00000515397 URB2Q14146 1524 aaKnown RBP20.69■□□□□ 0.9
VCAN-212ENST00000515397 PRDM2Q13029 1718 aa20.56■□□□□ 0.88
VCAN-212ENST00000515397 TOPBP1Q92547 1522 aa20.51■□□□□ 0.87
VCAN-212ENST00000515397 ZNF608Q9ULD9 1512 aaPredicted RBP20.43■□□□□ 0.86
VCAN-212ENST00000515397 DNMBPQ6XZF7 1577 aa20.41■□□□□ 0.86
VCAN-212ENST00000515397 ABCC8Q09428 1581 aa20.4■□□□□ 0.86
VCAN-212ENST00000515397 IFT140Q96RY7 1462 aa20.39■□□□□ 0.85
VCAN-212ENST00000515397 RAD54L2Q9Y4B4 1467 aa20.35■□□□□ 0.85
VCAN-212ENST00000515397 POLA1P09884 1462 aaPredicted RBP20.34■□□□□ 0.85
VCAN-212ENST00000515397 AQRO60306 1485 aaKnown RBP eCLIP20.32■□□□□ 0.84
VCAN-212ENST00000515397 SOGA1O94964 1423 aa20.31■□□□□ 0.84
VCAN-212ENST00000515397 CUX1P39880 1505 aa20.31■□□□□ 0.84
VCAN-212ENST00000515397 OSCARQ8IYS5 282 aa20.29■□□□□ 0.84
VCAN-212ENST00000515397 TDRD9Q8NDG6 1382 aaKnown RBP20.28■□□□□ 0.84
VCAN-212ENST00000515397 FGD5Q6ZNL6 1462 aa20.27■□□□□ 0.84
VCAN-212ENST00000515397 TARBP1Q13395 1621 aaKnown RBP20.26■□□□□ 0.83
VCAN-212ENST00000515397 FBLN2P98095 1184 aa20.21■□□□□ 0.83
VCAN-212ENST00000515397 EIF4G3O43432 1585 aaKnown RBP20.21■□□□□ 0.83
VCAN-212ENST00000515397 TRIM41Q8WV44 630 aa20.17■□□□□ 0.82
VCAN-212ENST00000515397 WRNQ14191 1432 aaPredicted RBP eCLIP20.12■□□□□ 0.81
VCAN-212ENST00000515397 SYNJ1O43426 1573 aa20.07■□□□□ 0.8
VCAN-212ENST00000515397 SNAPC4Q5SXM2 1469 aa20.05■□□□□ 0.8
VCAN-212ENST00000515397 CHMP7Q8WUX9 453 aaPredicted RBP20.04■□□□□ 0.8
VCAN-212ENST00000515397 GRIN2BQ13224 1484 aa20.02■□□□□ 0.8
VCAN-212ENST00000515397 GAPVD1Q14C86 1478 aa20.02■□□□□ 0.8
VCAN-212ENST00000515397 TOP2BQ02880 1626 aa20.02■□□□□ 0.79
VCAN-212ENST00000515397 ABCA10Q8WWZ4 1543 aa20.02■□□□□ 0.79
VCAN-212ENST00000515397 CHD1O14646 1710 aa19.99■□□□□ 0.79
VCAN-212ENST00000515397 WDR97A6NE52 1622 aa19.97■□□□□ 0.79
VCAN-212ENST00000515397 BIVM-ERCC5R4GMW8 1640 aa19.97■□□□□ 0.79
VCAN-212ENST00000515397 MAGI1Q96QZ7 1491 aaPredicted RBP19.92■□□□□ 0.78
VCAN-212ENST00000515397 ABCA5Q8WWZ7 1642 aa19.91■□□□□ 0.78
VCAN-212ENST00000515397 SYNJ2O15056 1496 aa19.89■□□□□ 0.77
VCAN-212ENST00000515397 PBRM1Q86U86 1689 aa19.88■□□□□ 0.77
VCAN-212ENST00000515397 CYB5RLQ6IPT4 315 aa19.88■□□□□ 0.77
VCAN-212ENST00000515397 RIMBP3CA6NJZ7 1639 aa19.87■□□□□ 0.77
VCAN-212ENST00000515397 RIMBP3BA6NNM3 1639 aa19.87■□□□□ 0.77
VCAN-212ENST00000515397 RIMBP3Q9UFD9 1639 aa19.87■□□□□ 0.77
VCAN-212ENST00000515397 ARHGEF11O15085 1522 aa19.86■□□□□ 0.77
VCAN-212ENST00000515397 FHAD1B1AJZ9 1412 aa19.76■□□□□ 0.75
VCAN-212ENST00000515397 CLASP1Q7Z460 1538 aa19.76■□□□□ 0.75
VCAN-212ENST00000515397 GRIN2AQ12879 1464 aa19.75■□□□□ 0.75
VCAN-212ENST00000515397 ADAMTS12P58397 1594 aa19.74■□□□□ 0.75
VCAN-212ENST00000515397 ERICH3Q5RHP9 1530 aa19.73■□□□□ 0.75
VCAN-212ENST00000515397 ARAP1Q96P48 1450 aa19.73■□□□□ 0.75
VCAN-212ENST00000515397 IGF1RP08069 1367 aa19.72■□□□□ 0.75
VCAN-212ENST00000515397 KIF27Q86VH2 1401 aa19.7■□□□□ 0.74
VCAN-212ENST00000515397 CEP170Q5SW79 1584 aa19.67■□□□□ 0.74
VCAN-212ENST00000515397 NUP160Q12769 1436 aa19.66■□□□□ 0.74
VCAN-212ENST00000515397 ERCC6L2Q5T890 1561 aa19.61■□□□□ 0.73
VCAN-212ENST00000515397 RUSC2Q8N2Y8 1516 aa19.61■□□□□ 0.73
VCAN-212ENST00000515397 JPH4Q96JJ6 628 aa19.6■□□□□ 0.73
VCAN-212ENST00000515397 CARMIL1Q5VZK9 1371 aa19.59■□□□□ 0.73
VCAN-212ENST00000515397 TRHP20396 242 aaPredicted RBP19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms