RNA–Protein interactions for RNA: ENST00000515239.5

CSF1R-208, Transcript of colony stimulating factor 1 receptor, humanhuman

TSL 3

Gene CSF1R, Length 584 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSF1R-208ENST00000515239 NISCHQ9Y2I1 1504 aa30.5■■■□□ 2.47
CSF1R-208ENST00000515239 ABCC9O60706 1549 aa28.28■■■□□ 2.12
CSF1R-208ENST00000515239 CCDC180Q9P1Z9 1646 aa27.56■■■□□ 2
CSF1R-208ENST00000515239 DNAJC5BQ9UF47 199 aa27.23■■□□□ 1.95
CSF1R-208ENST00000515239 RB1CC1Q8TDY2 1594 aa26.58■■□□□ 1.85
CSF1R-208ENST00000515239 PABPN1Q86U42 306 aaKnown RBP eCLIP26.29■■□□□ 1.8
CSF1R-208ENST00000515239 NACADO15069 1562 aa26.26■■□□□ 1.79
CSF1R-208ENST00000515239 DCAF8L2P0C7V8 631 aa26.08■■□□□ 1.77
CSF1R-208ENST00000515239 UNC13AQ9UPW8 1703 aa25.96■■□□□ 1.75
CSF1R-208ENST00000515239 BICRAQ9NZM4 1560 aa25.89■■□□□ 1.73
CSF1R-208ENST00000515239 MYO15BQ96JP2 1530 aa25.71■■□□□ 1.71
CSF1R-208ENST00000515239 CECR2Q9BXF3 1484 aa25.53■■□□□ 1.68
CSF1R-208ENST00000515239 CC2D2AQ9P2K1 1620 aa25.49■■□□□ 1.67
CSF1R-208ENST00000515239 DNAJC5Q9H3Z4 198 aa25.44■■□□□ 1.66
CSF1R-208ENST00000515239 SHROOM4Q9ULL8 1493 aa25.4■■□□□ 1.66
CSF1R-208ENST00000515239 EIF4G1Q04637 1599 aaKnown RBP25.27■■□□□ 1.64
CSF1R-208ENST00000515239 DCAF1Q9Y4B6 1507 aa25.13■■□□□ 1.61
CSF1R-208ENST00000515239 ZCCHC6Q5VYS8 1495 aaKnown RBP25.11■■□□□ 1.61
CSF1R-208ENST00000515239 SCRIBQ14160 1630 aa25.09■■□□□ 1.61
CSF1R-208ENST00000515239 CUX2O14529 1486 aa24.6■■□□□ 1.53
CSF1R-208ENST00000515239 ERCC6Q03468 1493 aa24.41■■□□□ 1.5
CSF1R-208ENST00000515239 NCAPD3P42695 1498 aa24.32■■□□□ 1.48
CSF1R-208ENST00000515239 ATAD2BQ9ULI0 1458 aa24.13■■□□□ 1.45
CSF1R-208ENST00000515239 NESP48681 1621 aa24.13■■□□□ 1.45
CSF1R-208ENST00000515239 TRIM41Q8WV44 630 aa24■■□□□ 1.43
CSF1R-208ENST00000515239 HMGXB3Q12766 1538 aa24■■□□□ 1.43
CSF1R-208ENST00000515239 SMARCA2P51531 1590 aa23.97■■□□□ 1.43
CSF1R-208ENST00000515239 THOC2Q8NI27 1593 aaKnown RBP23.94■■□□□ 1.42
CSF1R-208ENST00000515239 SMARCA4P51532 1647 aa23.89■■□□□ 1.42
CSF1R-208ENST00000515239 BAZ1BQ9UIG0 1483 aaKnown RBP23.81■■□□□ 1.4
CSF1R-208ENST00000515239 LAMC3Q9Y6N6 1575 aa23.79■■□□□ 1.4
CSF1R-208ENST00000515239 KIF21AQ7Z4S6 1674 aa23.72■■□□□ 1.39
CSF1R-208ENST00000515239 PDS5BQ9NTI5 1447 aa23.71■■□□□ 1.39
CSF1R-208ENST00000515239 PEG3Q9GZU2 1588 aa23.69■■□□□ 1.38
CSF1R-208ENST00000515239 BAZ1AQ9NRL2 1556 aaPredicted RBP23.68■■□□□ 1.38
CSF1R-208ENST00000515239 CADPSQ9ULU8 1353 aa23.54■■□□□ 1.36
CSF1R-208ENST00000515239 MRC2Q9UBG0 1479 aa23.53■■□□□ 1.36
CSF1R-208ENST00000515239 MROH2BQ7Z745 1585 aa23.51■■□□□ 1.35
CSF1R-208ENST00000515239 WDR62O43379 1518 aa23.49■■□□□ 1.35
CSF1R-208ENST00000515239 OSCARQ8IYS5 282 aa23.46■■□□□ 1.35
CSF1R-208ENST00000515239 CEP164Q9UPV0 1460 aa23.29■■□□□ 1.32
CSF1R-208ENST00000515239 FANCD2Q9BXW9 1451 aa23.24■■□□□ 1.31
CSF1R-208ENST00000515239 WIZO95785 1651 aa23.16■■□□□ 1.3
CSF1R-208ENST00000515239 RIMBP3CA6NJZ7 1639 aa23.13■■□□□ 1.29
CSF1R-208ENST00000515239 RIMBP3BA6NNM3 1639 aa23.13■■□□□ 1.29
CSF1R-208ENST00000515239 RIMBP3Q9UFD9 1639 aa23.13■■□□□ 1.29
CSF1R-208ENST00000515239 CFTRP13569 1480 aa23.12■■□□□ 1.29
CSF1R-208ENST00000515239 URB2Q14146 1524 aaKnown RBP23.11■■□□□ 1.29
CSF1R-208ENST00000515239 ARHGEF11O15085 1522 aa23.01■■□□□ 1.27
CSF1R-208ENST00000515239 CYB5RLQ6IPT4 315 aa22.96■■□□□ 1.27
CSF1R-208ENST00000515239 ZNF608Q9ULD9 1512 aaPredicted RBP22.94■■□□□ 1.26
CSF1R-208ENST00000515239 TRHP20396 242 aaPredicted RBP22.87■■□□□ 1.25
CSF1R-208ENST00000515239 IFT140Q96RY7 1462 aa22.86■■□□□ 1.25
CSF1R-208ENST00000515239 RSF1Q96T23 1441 aaPredicted RBP22.81■■□□□ 1.24
CSF1R-208ENST00000515239 TOP2AP11388 1531 aaKnown RBP22.8■■□□□ 1.24
CSF1R-208ENST00000515239 ARAP1Q96P48 1450 aa22.75■■□□□ 1.23
CSF1R-208ENST00000515239 TOPBP1Q92547 1522 aa22.72■■□□□ 1.23
CSF1R-208ENST00000515239 PRDM2Q13029 1718 aa22.71■■□□□ 1.23
CSF1R-208ENST00000515239 EIF4G3O43432 1585 aaKnown RBP22.7■■□□□ 1.22
CSF1R-208ENST00000515239 AQRO60306 1485 aaKnown RBP eCLIP22.66■■□□□ 1.22
CSF1R-208ENST00000515239 AEBP2Q6ZN18 517 aaPredicted RBP22.66■■□□□ 1.22
CSF1R-208ENST00000515239 FBLN2P98095 1184 aa22.64■■□□□ 1.21
CSF1R-208ENST00000515239 CHD1O14646 1710 aa22.64■■□□□ 1.21
CSF1R-208ENST00000515239 CCDC88BA6NC98 1476 aa22.62■■□□□ 1.21
CSF1R-208ENST00000515239 ABCC8Q09428 1581 aa22.62■■□□□ 1.21
CSF1R-208ENST00000515239 TARBP1Q13395 1621 aaKnown RBP22.57■■□□□ 1.2
CSF1R-208ENST00000515239 DNMBPQ6XZF7 1577 aa22.55■■□□□ 1.2
CSF1R-208ENST00000515239 POLA1P09884 1462 aaPredicted RBP22.46■■□□□ 1.19
CSF1R-208ENST00000515239 TDRD9Q8NDG6 1382 aaKnown RBP22.43■■□□□ 1.18
CSF1R-208ENST00000515239 CLASP1Q7Z460 1538 aa22.41■■□□□ 1.18
CSF1R-208ENST00000515239 RAD54L2Q9Y4B4 1467 aa22.41■■□□□ 1.18
CSF1R-208ENST00000515239 SOGA1O94964 1423 aa22.38■■□□□ 1.17
CSF1R-208ENST00000515239 CHMP7Q8WUX9 453 aaPredicted RBP22.37■■□□□ 1.17
CSF1R-208ENST00000515239 SNAPC4Q5SXM2 1469 aa22.34■■□□□ 1.17
CSF1R-208ENST00000515239 SYNJ1O43426 1573 aa22.29■■□□□ 1.16
CSF1R-208ENST00000515239 MAGI1Q96QZ7 1491 aaPredicted RBP22.27■■□□□ 1.16
CSF1R-208ENST00000515239 GAPVD1Q14C86 1478 aa22.24■■□□□ 1.15
CSF1R-208ENST00000515239 WDR97A6NE52 1622 aa22.23■■□□□ 1.15
CSF1R-208ENST00000515239 SYNJ2O15056 1496 aa22.22■■□□□ 1.15
CSF1R-208ENST00000515239 GRIN2BQ13224 1484 aa22.22■■□□□ 1.15
CSF1R-208ENST00000515239 FGD5Q6ZNL6 1462 aa22.22■■□□□ 1.15
CSF1R-208ENST00000515239 CUX1P39880 1505 aa22.11■■□□□ 1.13
CSF1R-208ENST00000515239 ERCC6L2Q5T890 1561 aa22.04■■□□□ 1.12
CSF1R-208ENST00000515239 PBRM1Q86U86 1689 aa22.01■■□□□ 1.11
CSF1R-208ENST00000515239 CEP170Q5SW79 1584 aa21.93■■□□□ 1.1
CSF1R-208ENST00000515239 ABCA10Q8WWZ4 1543 aa21.93■■□□□ 1.1
CSF1R-208ENST00000515239 ABCA5Q8WWZ7 1642 aa21.92■■□□□ 1.1
CSF1R-208ENST00000515239 GRIN2AQ12879 1464 aa21.92■■□□□ 1.1
CSF1R-208ENST00000515239 NUP160Q12769 1436 aa21.9■■□□□ 1.1
CSF1R-208ENST00000515239 KIF13AQ9H1H9 1805 aa21.89■■□□□ 1.09
CSF1R-208ENST00000515239 SHROOM2Q13796 1616 aa21.84■■□□□ 1.09
CSF1R-208ENST00000515239 KDM4FA0A1W2PPD8 638 aa21.81■■□□□ 1.08
CSF1R-208ENST00000515239 FAM69CQ0P6D2 419 aa21.79■■□□□ 1.08
CSF1R-208ENST00000515239 ILDR1Q86SU0 546 aaPredicted RBP21.79■■□□□ 1.08
CSF1R-208ENST00000515239 ADAMTS12P58397 1594 aa21.78■■□□□ 1.08
CSF1R-208ENST00000515239 FHAD1B1AJZ9 1412 aa21.75■■□□□ 1.07
CSF1R-208ENST00000515239 PRG4Q92954 1404 aaPredicted RBP21.75■■□□□ 1.07
CSF1R-208ENST00000515239 ABCC10Q5T3U5 1492 aa21.75■■□□□ 1.07
CSF1R-208ENST00000515239 JPH4Q96JJ6 628 aa21.74■■□□□ 1.07
CSF1R-208ENST00000515239 WRNQ14191 1432 aaPredicted RBP eCLIP21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms