RNA–Protein interactions for RNA: ENST00000514773.1

PCDH1-207, Transcript of protocadherin 1, humanhuman

TSL 4

Gene PCDH1, Length 553 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-207ENST00000514773 NISCHQ9Y2I1 1504 aa43.11■■■■■ 4.49
PCDH1-207ENST00000514773 CCDC180Q9P1Z9 1646 aa38.27■■■■□ 3.72
PCDH1-207ENST00000514773 ABCC9O60706 1549 aa37.26■■■■□ 3.55
PCDH1-207ENST00000514773 DCAF8L2P0C7V8 631 aa36.02■■■■□ 3.36
PCDH1-207ENST00000514773 NACADO15069 1562 aa35.98■■■■□ 3.35
PCDH1-207ENST00000514773 RB1CC1Q8TDY2 1594 aa35.98■■■■□ 3.35
PCDH1-207ENST00000514773 ZCCHC6Q5VYS8 1495 aaKnown RBP35.92■■■■□ 3.34
PCDH1-207ENST00000514773 MYO15BQ96JP2 1530 aa35.83■■■■□ 3.33
PCDH1-207ENST00000514773 DCAF1Q9Y4B6 1507 aa35.73■■■■□ 3.31
PCDH1-207ENST00000514773 UNC13AQ9UPW8 1703 aa35.03■■■■□ 3.2
PCDH1-207ENST00000514773 SCRIBQ14160 1630 aa34.88■■■■□ 3.17
PCDH1-207ENST00000514773 PABPN1Q86U42 306 aaKnown RBP eCLIP34.85■■■■□ 3.17
PCDH1-207ENST00000514773 BICRAQ9NZM4 1560 aa34.77■■■■□ 3.16
PCDH1-207ENST00000514773 SHROOM4Q9ULL8 1493 aa34.58■■■■□ 3.13
PCDH1-207ENST00000514773 DNAJC5BQ9UF47 199 aa33.98■■■■□ 3.03
PCDH1-207ENST00000514773 EIF4G1Q04637 1599 aaKnown RBP33.9■■■■□ 3.02
PCDH1-207ENST00000514773 CC2D2AQ9P2K1 1620 aa33.71■■■□□ 2.99
PCDH1-207ENST00000514773 CECR2Q9BXF3 1484 aa33.5■■■□□ 2.95
PCDH1-207ENST00000514773 BAZ1AQ9NRL2 1556 aaPredicted RBP33.44■■■□□ 2.94
PCDH1-207ENST00000514773 SMARCA4P51532 1647 aa33.4■■■□□ 2.94
PCDH1-207ENST00000514773 SMARCA2P51531 1590 aa33.22■■■□□ 2.91
PCDH1-207ENST00000514773 ATAD2BQ9ULI0 1458 aa33.19■■■□□ 2.9
PCDH1-207ENST00000514773 NCAPD3P42695 1498 aa33.18■■■□□ 2.9
PCDH1-207ENST00000514773 MROH2BQ7Z745 1585 aa33.17■■■□□ 2.9
PCDH1-207ENST00000514773 PEG3Q9GZU2 1588 aa33.1■■■□□ 2.89
PCDH1-207ENST00000514773 HMGXB3Q12766 1538 aa33.03■■■□□ 2.88
PCDH1-207ENST00000514773 BAZ1BQ9UIG0 1483 aaKnown RBP32.97■■■□□ 2.87
PCDH1-207ENST00000514773 RSF1Q96T23 1441 aaPredicted RBP32.89■■■□□ 2.86
PCDH1-207ENST00000514773 WIZO95785 1651 aa32.82■■■□□ 2.84
PCDH1-207ENST00000514773 TOP2AP11388 1531 aaKnown RBP32.54■■■□□ 2.8
PCDH1-207ENST00000514773 LAMC3Q9Y6N6 1575 aa32.29■■■□□ 2.76
PCDH1-207ENST00000514773 NESP48681 1621 aa32.25■■■□□ 2.75
PCDH1-207ENST00000514773 CADPSQ9ULU8 1353 aa32.24■■■□□ 2.75
PCDH1-207ENST00000514773 SUPT5HO00267 1087 aaKnown RBP32.22■■■□□ 2.75
PCDH1-207ENST00000514773 ERCC6Q03468 1493 aa32.19■■■□□ 2.74
PCDH1-207ENST00000514773 CCDC88BA6NC98 1476 aa32.15■■■□□ 2.74
PCDH1-207ENST00000514773 PDS5BQ9NTI5 1447 aa32.12■■■□□ 2.73
PCDH1-207ENST00000514773 CFTRP13569 1480 aa32.06■■■□□ 2.72
PCDH1-207ENST00000514773 KIF21AQ7Z4S6 1674 aa31.88■■■□□ 2.69
PCDH1-207ENST00000514773 FANCD2Q9BXW9 1451 aa31.84■■■□□ 2.69
PCDH1-207ENST00000514773 CEP164Q9UPV0 1460 aa31.81■■■□□ 2.68
PCDH1-207ENST00000514773 PRDM2Q13029 1718 aa31.8■■■□□ 2.68
PCDH1-207ENST00000514773 CUX2O14529 1486 aa31.78■■■□□ 2.68
PCDH1-207ENST00000514773 THOC2Q8NI27 1593 aaKnown RBP31.74■■■□□ 2.67
PCDH1-207ENST00000514773 MRC2Q9UBG0 1479 aa31.72■■■□□ 2.67
PCDH1-207ENST00000514773 WDR62O43379 1518 aa31.59■■■□□ 2.65
PCDH1-207ENST00000514773 URB2Q14146 1524 aaKnown RBP31.47■■■□□ 2.63
PCDH1-207ENST00000514773 ABCC8Q09428 1581 aa31.45■■■□□ 2.63
PCDH1-207ENST00000514773 TOPBP1Q92547 1522 aa31.34■■■□□ 2.61
PCDH1-207ENST00000514773 DNMBPQ6XZF7 1577 aa31.33■■■□□ 2.61
PCDH1-207ENST00000514773 IFT140Q96RY7 1462 aa31.15■■■□□ 2.58
PCDH1-207ENST00000514773 CUX1P39880 1505 aa31.13■■■□□ 2.57
PCDH1-207ENST00000514773 POLA1P09884 1462 aaPredicted RBP31.08■■■□□ 2.57
PCDH1-207ENST00000514773 WRNQ14191 1432 aaPredicted RBP eCLIP31.06■■■□□ 2.56
PCDH1-207ENST00000514773 FGD5Q6ZNL6 1462 aa31.02■■■□□ 2.56
PCDH1-207ENST00000514773 SOGA1O94964 1423 aa31■■■□□ 2.55
PCDH1-207ENST00000514773 TARBP1Q13395 1621 aaKnown RBP30.95■■■□□ 2.55
PCDH1-207ENST00000514773 TOP2BQ02880 1626 aa30.95■■■□□ 2.54
PCDH1-207ENST00000514773 BIVM-ERCC5R4GMW8 1640 aa30.92■■■□□ 2.54
PCDH1-207ENST00000514773 RAD54L2Q9Y4B4 1467 aa30.91■■■□□ 2.54
PCDH1-207ENST00000514773 ZNF608Q9ULD9 1512 aaPredicted RBP30.9■■■□□ 2.54
PCDH1-207ENST00000514773 SYNJ1O43426 1573 aa30.89■■■□□ 2.54
PCDH1-207ENST00000514773 WDR97A6NE52 1622 aa30.83■■■□□ 2.53
PCDH1-207ENST00000514773 EIF4G3O43432 1585 aaKnown RBP30.81■■■□□ 2.52
PCDH1-207ENST00000514773 AQRO60306 1485 aaKnown RBP eCLIP30.78■■■□□ 2.52
PCDH1-207ENST00000514773 TDRD9Q8NDG6 1382 aaKnown RBP30.77■■■□□ 2.52
PCDH1-207ENST00000514773 ABCA10Q8WWZ4 1543 aa30.76■■■□□ 2.51
PCDH1-207ENST00000514773 GAPVD1Q14C86 1478 aa30.64■■■□□ 2.5
PCDH1-207ENST00000514773 GRIN2BQ13224 1484 aa30.63■■■□□ 2.49
PCDH1-207ENST00000514773 DNAJC5Q9H3Z4 198 aa30.6■■■□□ 2.49
PCDH1-207ENST00000514773 ABCA5Q8WWZ7 1642 aa30.58■■■□□ 2.49
PCDH1-207ENST00000514773 OSCARQ8IYS5 282 aa30.54■■■□□ 2.48
PCDH1-207ENST00000514773 MAGI1Q96QZ7 1491 aaPredicted RBP30.53■■■□□ 2.48
PCDH1-207ENST00000514773 PBRM1Q86U86 1689 aa30.51■■■□□ 2.47
PCDH1-207ENST00000514773 SNAPC4Q5SXM2 1469 aa30.5■■■□□ 2.47
PCDH1-207ENST00000514773 TRIM41Q8WV44 630 aa30.49■■■□□ 2.47
PCDH1-207ENST00000514773 FBLN2P98095 1184 aa30.46■■■□□ 2.47
PCDH1-207ENST00000514773 KIF27Q86VH2 1401 aa30.43■■■□□ 2.46
PCDH1-207ENST00000514773 CHMP7Q8WUX9 453 aaPredicted RBP30.43■■■□□ 2.46
PCDH1-207ENST00000514773 ERICH3Q5RHP9 1530 aa30.42■■■□□ 2.46
PCDH1-207ENST00000514773 SYNJ2O15056 1496 aa30.4■■■□□ 2.46
PCDH1-207ENST00000514773 CHD1O14646 1710 aa30.37■■■□□ 2.45
PCDH1-207ENST00000514773 FHAD1B1AJZ9 1412 aa30.3■■■□□ 2.44
PCDH1-207ENST00000514773 ADAMTS12P58397 1594 aa30.28■■■□□ 2.44
PCDH1-207ENST00000514773 IGF1RP08069 1367 aa30.24■■■□□ 2.43
PCDH1-207ENST00000514773 GRIN2AQ12879 1464 aa30.2■■■□□ 2.43
PCDH1-207ENST00000514773 CUL7Q14999 1698 aa30.17■■■□□ 2.42
PCDH1-207ENST00000514773 CHIC1Q5VXU3 224 aa30.14■■■□□ 2.42
PCDH1-207ENST00000514773 CARMIL1Q5VZK9 1371 aa30.09■■■□□ 2.41
PCDH1-207ENST00000514773 CLASP1Q7Z460 1538 aa30.06■■■□□ 2.4
PCDH1-207ENST00000514773 RUSC2Q8N2Y8 1516 aa30.06■■■□□ 2.4
PCDH1-207ENST00000514773 NUP160Q12769 1436 aa30.05■■■□□ 2.4
PCDH1-207ENST00000514773 CEP170Q5SW79 1584 aa29.99■■■□□ 2.39
PCDH1-207ENST00000514773 EEA1Q15075 1411 aa29.98■■■□□ 2.39
PCDH1-207ENST00000514773 ARHGEF11O15085 1522 aa29.95■■■□□ 2.38
PCDH1-207ENST00000514773 RAPGEF2Q9Y4G8 1499 aa29.93■■■□□ 2.38
PCDH1-207ENST00000514773 RIMBP3CA6NJZ7 1639 aa29.91■■■□□ 2.38
PCDH1-207ENST00000514773 RIMBP3BA6NNM3 1639 aa29.91■■■□□ 2.38
PCDH1-207ENST00000514773 RIMBP3Q9UFD9 1639 aa29.91■■■□□ 2.38
PCDH1-207ENST00000514773 CSRNP3Q8WYN3 585 aa29.89■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 162.8 ms