RNA–Protein interactions for RNA: ENST00000514439.1

CPNE4-211, Transcript of copine 4, humanhuman

TSL 1 (best)

Gene CPNE4, Length 2,312 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-211ENST00000514439 NISCHQ9Y2I1 1504 aa17.71■□□□□ 0.43
CPNE4-211ENST00000514439 AEBP2Q6ZN18 517 aaPredicted RBP15.63■□□□□ 0.09
CPNE4-211ENST00000514439 CCDC180Q9P1Z9 1646 aa15.21■□□□□ 0.03
CPNE4-211ENST00000514439 CHIC1Q5VXU3 224 aa14.99□□□□□ -0.01
CPNE4-211ENST00000514439 ZCCHC6Q5VYS8 1495 aaKnown RBP14.96□□□□□ -0.02
CPNE4-211ENST00000514439 SHROOM4Q9ULL8 1493 aa14.81□□□□□ -0.04
CPNE4-211ENST00000514439 DCAF8L2P0C7V8 631 aa14.61□□□□□ -0.07
CPNE4-211ENST00000514439 DCAF1Q9Y4B6 1507 aa14.59□□□□□ -0.07
CPNE4-211ENST00000514439 SUPT5HO00267 1087 aaKnown RBP14.41□□□□□ -0.1
CPNE4-211ENST00000514439 MYO15BQ96JP2 1530 aa14.27□□□□□ -0.13
CPNE4-211ENST00000514439 ABCC9O60706 1549 aa14.19□□□□□ -0.14
CPNE4-211ENST00000514439 SCRIBQ14160 1630 aa14.14□□□□□ -0.15
CPNE4-211ENST00000514439 NACADO15069 1562 aa14.1□□□□□ -0.15
CPNE4-211ENST00000514439 RB1CC1Q8TDY2 1594 aa13.91□□□□□ -0.18
CPNE4-211ENST00000514439 RSF1Q96T23 1441 aaPredicted RBP13.91□□□□□ -0.18
CPNE4-211ENST00000514439 CECR2Q9BXF3 1484 aa13.79□□□□□ -0.2
CPNE4-211ENST00000514439 MROH2BQ7Z745 1585 aa13.73□□□□□ -0.21
CPNE4-211ENST00000514439 UNC13AQ9UPW8 1703 aa13.66□□□□□ -0.22
CPNE4-211ENST00000514439 WIZO95785 1651 aa13.63□□□□□ -0.23
CPNE4-211ENST00000514439 BAZ1AQ9NRL2 1556 aaPredicted RBP13.63□□□□□ -0.23
CPNE4-211ENST00000514439 SMARCA4P51532 1647 aa13.54□□□□□ -0.24
CPNE4-211ENST00000514439 BICRAQ9NZM4 1560 aa13.53□□□□□ -0.24
CPNE4-211ENST00000514439 PABPN1Q86U42 306 aaKnown RBP eCLIP13.49□□□□□ -0.25
CPNE4-211ENST00000514439 TRIM41Q8WV44 630 aa13.47□□□□□ -0.25
CPNE4-211ENST00000514439 TOP2AP11388 1531 aaKnown RBP13.47□□□□□ -0.25
CPNE4-211ENST00000514439 LOC105371045A0A1W2PR82 267 aa13.46□□□□□ -0.25
CPNE4-211ENST00000514439 SENP3Q9H4L4 574 aaPredicted RBP13.41□□□□□ -0.26
CPNE4-211ENST00000514439 EIF4G1Q04637 1599 aaKnown RBP13.4□□□□□ -0.26
CPNE4-211ENST00000514439 CCDC88BA6NC98 1476 aa13.37□□□□□ -0.27
CPNE4-211ENST00000514439 SMARCA2P51531 1590 aa13.37□□□□□ -0.27
CPNE4-211ENST00000514439 PEG3Q9GZU2 1588 aa13.33□□□□□ -0.28
CPNE4-211ENST00000514439 FAM9AQ8IZU1 332 aaPredicted RBP13.3□□□□□ -0.28
CPNE4-211ENST00000514439 ATAD2BQ9ULI0 1458 aa13.24□□□□□ -0.29
CPNE4-211ENST00000514439 ABCC8Q09428 1581 aa13.23□□□□□ -0.29
CPNE4-211ENST00000514439 PCGF6Q9BYE7 350 aa13.22□□□□□ -0.29
CPNE4-211ENST00000514439 PHF23Q9BUL5 403 aaPredicted RBP13.21□□□□□ -0.29
CPNE4-211ENST00000514439 BAZ1BQ9UIG0 1483 aaKnown RBP13.19□□□□□ -0.3
CPNE4-211ENST00000514439 EHMT2Q96KQ7 1210 aa13.15□□□□□ -0.3
CPNE4-211ENST00000514439 HRCP23327 699 aa13.1□□□□□ -0.31
CPNE4-211ENST00000514439 WRNQ14191 1432 aaPredicted RBP eCLIP13.07□□□□□ -0.32
CPNE4-211ENST00000514439 TRIM26Q12899 539 aaPredicted RBP13.07□□□□□ -0.32
CPNE4-211ENST00000514439 SOGA1O94964 1423 aa13.06□□□□□ -0.32
CPNE4-211ENST00000514439 HMGXB3Q12766 1538 aa13.05□□□□□ -0.32
CPNE4-211ENST00000514439 NCAPD3P42695 1498 aa13.04□□□□□ -0.32
CPNE4-211ENST00000514439 EEA1Q15075 1411 aa13.02□□□□□ -0.32
CPNE4-211ENST00000514439 SYNJ1O43426 1573 aa13.01□□□□□ -0.33
CPNE4-211ENST00000514439 RUSC2Q8N2Y8 1516 aa12.99□□□□□ -0.33
CPNE4-211ENST00000514439 CSRNP3Q8WYN3 585 aa12.96□□□□□ -0.33
CPNE4-211ENST00000514439 TNIKQ9UKE5 1360 aa12.92□□□□□ -0.34
CPNE4-211ENST00000514439 CEP162Q5TB80 1403 aa12.91□□□□□ -0.34
CPNE4-211ENST00000514439 TOP2BQ02880 1626 aa12.9□□□□□ -0.35
CPNE4-211ENST00000514439 GOLGA3Q08378 1498 aa12.89□□□□□ -0.35
CPNE4-211ENST00000514439 CFTRP13569 1480 aa12.87□□□□□ -0.35
CPNE4-211ENST00000514439 BIVM-ERCC5R4GMW8 1640 aa12.86□□□□□ -0.35
CPNE4-211ENST00000514439 UBTFP17480 764 aaKnown RBP12.86□□□□□ -0.35
CPNE4-211ENST00000514439 CEP164Q9UPV0 1460 aa12.85□□□□□ -0.35
CPNE4-211ENST00000514439 KIF21BO75037 1637 aa12.85□□□□□ -0.35
CPNE4-211ENST00000514439 PPARGC1BQ86YN6 1023 aaKnown RBP12.84□□□□□ -0.35
CPNE4-211ENST00000514439 CC2D2AQ9P2K1 1620 aa12.81□□□□□ -0.36
CPNE4-211ENST00000514439 CUX1P39880 1505 aa12.81□□□□□ -0.36
CPNE4-211ENST00000514439 RAPGEF2Q9Y4G8 1499 aa12.77□□□□□ -0.37
CPNE4-211ENST00000514439 PRDM2Q13029 1718 aa12.76□□□□□ -0.37
CPNE4-211ENST00000514439 CADPSQ9ULU8 1353 aa12.76□□□□□ -0.37
CPNE4-211ENST00000514439 CLIP1P30622 1438 aa12.72□□□□□ -0.37
CPNE4-211ENST00000514439 PRXQ9BXM0 1461 aa12.7□□□□□ -0.38
CPNE4-211ENST00000514439 ERICH3Q5RHP9 1530 aa12.7□□□□□ -0.38
CPNE4-211ENST00000514439 KIF27Q86VH2 1401 aa12.69□□□□□ -0.38
CPNE4-211ENST00000514439 ZEB1P37275 1124 aaPredicted RBP12.69□□□□□ -0.38
CPNE4-211ENST00000514439 TTBK1Q5TCY1 1321 aaPredicted RBP12.68□□□□□ -0.38
CPNE4-211ENST00000514439 VPS8Q8N3P4 1428 aa12.65□□□□□ -0.38
CPNE4-211ENST00000514439 FANCD2Q9BXW9 1451 aa12.63□□□□□ -0.39
CPNE4-211ENST00000514439 FGD5Q6ZNL6 1462 aa12.61□□□□□ -0.39
CPNE4-211ENST00000514439 CUX2O14529 1486 aa12.61□□□□□ -0.39
CPNE4-211ENST00000514439 RANGAP1P46060 587 aaPredicted RBP12.61□□□□□ -0.39
CPNE4-211ENST00000514439 NESP48681 1621 aa12.58□□□□□ -0.4
CPNE4-211ENST00000514439 IGF1RP08069 1367 aa12.56□□□□□ -0.4
CPNE4-211ENST00000514439 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.56□□□□□ -0.4
CPNE4-211ENST00000514439 ARAP1Q96P48 1450 aa12.56□□□□□ -0.4
CPNE4-211ENST00000514439 DNMBPQ6XZF7 1577 aa12.55□□□□□ -0.4
CPNE4-211ENST00000514439 APLP2Q06481 763 aa12.53□□□□□ -0.4
CPNE4-211ENST00000514439 LAMC3Q9Y6N6 1575 aa12.53□□□□□ -0.4
CPNE4-211ENST00000514439 TOPBP1Q92547 1522 aa12.53□□□□□ -0.4
CPNE4-211ENST00000514439 CCER1Q8TC90 406 aaPredicted RBP12.52□□□□□ -0.41
CPNE4-211ENST00000514439 POLA1P09884 1462 aaPredicted RBP12.5□□□□□ -0.41
CPNE4-211ENST00000514439 CARMIL1Q5VZK9 1371 aa12.5□□□□□ -0.41
CPNE4-211ENST00000514439 RAD54L2Q9Y4B4 1467 aa12.49□□□□□ -0.41
CPNE4-211ENST00000514439 ARHGAP35Q9NRY4 1499 aa12.49□□□□□ -0.41
CPNE4-211ENST00000514439 ABCA10Q8WWZ4 1543 aa12.48□□□□□ -0.41
CPNE4-211ENST00000514439 DNAJC5BQ9UF47 199 aa12.48□□□□□ -0.41
CPNE4-211ENST00000514439 URB2Q14146 1524 aaKnown RBP12.46□□□□□ -0.42
CPNE4-211ENST00000514439 PDS5BQ9NTI5 1447 aa12.44□□□□□ -0.42
CPNE4-211ENST00000514439 FOXD1Q16676 465 aa12.43□□□□□ -0.42
CPNE4-211ENST00000514439 HNRNPUL2Q1KMD3 747 aaKnown RBP12.42□□□□□ -0.42
CPNE4-211ENST00000514439 KANK4Q5T7N3 995 aaPredicted RBP12.4□□□□□ -0.42
CPNE4-211ENST00000514439 WDR97A6NE52 1622 aa12.4□□□□□ -0.43
CPNE4-211ENST00000514439 CUL7Q14999 1698 aa12.39□□□□□ -0.43
CPNE4-211ENST00000514439 KIF21AQ7Z4S6 1674 aa12.38□□□□□ -0.43
CPNE4-211ENST00000514439 ABCA5Q8WWZ7 1642 aa12.35□□□□□ -0.43
CPNE4-211ENST00000514439 TDRD9Q8NDG6 1382 aaKnown RBP12.34□□□□□ -0.43
CPNE4-211ENST00000514439 GAPVD1Q14C86 1478 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms