RNA–Protein interactions for RNA: ENST00000514421.1

CCL28-204, Transcript of C-C motif chemokine ligand 28, humanhuman

TSL 3

Gene CCL28, Length 577 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-204ENST00000514421 NISCHQ9Y2I1 1504 aa19.84■□□□□ 0.77
CCL28-204ENST00000514421 AEBP2Q6ZN18 517 aaPredicted RBP18.17■□□□□ 0.5
CCL28-204ENST00000514421 CCDC180Q9P1Z9 1646 aa17.48■□□□□ 0.39
CCL28-204ENST00000514421 ABCC9O60706 1549 aa17.21■□□□□ 0.35
CCL28-204ENST00000514421 CHIC1Q5VXU3 224 aa17.2■□□□□ 0.34
CCL28-204ENST00000514421 DCAF8L2P0C7V8 631 aa16.75■□□□□ 0.27
CCL28-204ENST00000514421 NACADO15069 1562 aa16.54■□□□□ 0.24
CCL28-204ENST00000514421 RB1CC1Q8TDY2 1594 aa16.53■□□□□ 0.24
CCL28-204ENST00000514421 ZCCHC6Q5VYS8 1495 aaKnown RBP16.48■□□□□ 0.23
CCL28-204ENST00000514421 MYO15BQ96JP2 1530 aa16.47■□□□□ 0.23
CCL28-204ENST00000514421 DCAF1Q9Y4B6 1507 aa16.4■□□□□ 0.22
CCL28-204ENST00000514421 PABPN1Q86U42 306 aaKnown RBP eCLIP16.21■□□□□ 0.19
CCL28-204ENST00000514421 UNC13AQ9UPW8 1703 aa16■□□□□ 0.15
CCL28-204ENST00000514421 SCRIBQ14160 1630 aa16■□□□□ 0.15
CCL28-204ENST00000514421 BICRAQ9NZM4 1560 aa16■□□□□ 0.15
CCL28-204ENST00000514421 DNAJC5BQ9UF47 199 aa15.88■□□□□ 0.13
CCL28-204ENST00000514421 SHROOM4Q9ULL8 1493 aa15.86■□□□□ 0.13
CCL28-204ENST00000514421 SENP3Q9H4L4 574 aaPredicted RBP15.8■□□□□ 0.12
CCL28-204ENST00000514421 EIF4G1Q04637 1599 aaKnown RBP15.59■□□□□ 0.09
CCL28-204ENST00000514421 CC2D2AQ9P2K1 1620 aa15.51■□□□□ 0.07
CCL28-204ENST00000514421 CECR2Q9BXF3 1484 aa15.48■□□□□ 0.07
CCL28-204ENST00000514421 PHF23Q9BUL5 403 aaPredicted RBP15.43■□□□□ 0.06
CCL28-204ENST00000514421 BAZ1AQ9NRL2 1556 aaPredicted RBP15.35■□□□□ 0.05
CCL28-204ENST00000514421 NCAPD3P42695 1498 aa15.33■□□□□ 0.04
CCL28-204ENST00000514421 ATAD2BQ9ULI0 1458 aa15.32■□□□□ 0.04
CCL28-204ENST00000514421 SMARCA4P51532 1647 aa15.32■□□□□ 0.04
CCL28-204ENST00000514421 MROH2BQ7Z745 1585 aa15.28■□□□□ 0.04
CCL28-204ENST00000514421 SMARCA2P51531 1590 aa15.25■□□□□ 0.03
CCL28-204ENST00000514421 RSF1Q96T23 1441 aaPredicted RBP15.18■□□□□ 0.02
CCL28-204ENST00000514421 PEG3Q9GZU2 1588 aa15.18■□□□□ 0.02
CCL28-204ENST00000514421 BAZ1BQ9UIG0 1483 aaKnown RBP15.17■□□□□ 0.02
CCL28-204ENST00000514421 HMGXB3Q12766 1538 aa15.15■□□□□ 0.02
CCL28-204ENST00000514421 WIZO95785 1651 aa15.06■□□□□ 0
CCL28-204ENST00000514421 TOP2AP11388 1531 aaKnown RBP14.92□□□□□ -0.02
CCL28-204ENST00000514421 SUPT5HO00267 1087 aaKnown RBP14.92□□□□□ -0.02
CCL28-204ENST00000514421 CADPSQ9ULU8 1353 aa14.92□□□□□ -0.02
CCL28-204ENST00000514421 NESP48681 1621 aa14.89□□□□□ -0.03
CCL28-204ENST00000514421 ERCC6Q03468 1493 aa14.84□□□□□ -0.03
CCL28-204ENST00000514421 PDS5BQ9NTI5 1447 aa14.83□□□□□ -0.03
CCL28-204ENST00000514421 CCDC88BA6NC98 1476 aa14.82□□□□□ -0.04
CCL28-204ENST00000514421 LAMC3Q9Y6N6 1575 aa14.82□□□□□ -0.04
CCL28-204ENST00000514421 CFTRP13569 1480 aa14.78□□□□□ -0.04
CCL28-204ENST00000514421 FANCD2Q9BXW9 1451 aa14.68□□□□□ -0.06
CCL28-204ENST00000514421 FOXD1Q16676 465 aa14.66□□□□□ -0.06
CCL28-204ENST00000514421 CUX2O14529 1486 aa14.65□□□□□ -0.06
CCL28-204ENST00000514421 POTEDQ86YR6 584 aa14.65□□□□□ -0.06
CCL28-204ENST00000514421 CEP164Q9UPV0 1460 aa14.63□□□□□ -0.07
CCL28-204ENST00000514421 MRC2Q9UBG0 1479 aa14.61□□□□□ -0.07
CCL28-204ENST00000514421 KIF21AQ7Z4S6 1674 aa14.59□□□□□ -0.07
CCL28-204ENST00000514421 THOC2Q8NI27 1593 aaKnown RBP14.56□□□□□ -0.08
CCL28-204ENST00000514421 WDR62O43379 1518 aa14.51□□□□□ -0.09
CCL28-204ENST00000514421 URB2Q14146 1524 aaKnown RBP14.5□□□□□ -0.09
CCL28-204ENST00000514421 ABCC8Q09428 1581 aa14.48□□□□□ -0.09
CCL28-204ENST00000514421 PRDM2Q13029 1718 aa14.44□□□□□ -0.1
CCL28-204ENST00000514421 TOPBP1Q92547 1522 aa14.43□□□□□ -0.1
CCL28-204ENST00000514421 DNMBPQ6XZF7 1577 aa14.38□□□□□ -0.11
CCL28-204ENST00000514421 IFT140Q96RY7 1462 aa14.36□□□□□ -0.11
CCL28-204ENST00000514421 SOGA1O94964 1423 aa14.33□□□□□ -0.11
CCL28-204ENST00000514421 POLA1P09884 1462 aaPredicted RBP14.31□□□□□ -0.12
CCL28-204ENST00000514421 CUX1P39880 1505 aa14.31□□□□□ -0.12
CCL28-204ENST00000514421 DNAJC5Q9H3Z4 198 aa14.3□□□□□ -0.12
CCL28-204ENST00000514421 WRNQ14191 1432 aaPredicted RBP eCLIP14.3□□□□□ -0.12
CCL28-204ENST00000514421 FGD5Q6ZNL6 1462 aa14.28□□□□□ -0.12
CCL28-204ENST00000514421 RAD54L2Q9Y4B4 1467 aa14.28□□□□□ -0.12
CCL28-204ENST00000514421 ZNF608Q9ULD9 1512 aaPredicted RBP14.27□□□□□ -0.12
CCL28-204ENST00000514421 AQRO60306 1485 aaKnown RBP eCLIP14.25□□□□□ -0.13
CCL28-204ENST00000514421 TDRD9Q8NDG6 1382 aaKnown RBP14.25□□□□□ -0.13
CCL28-204ENST00000514421 OSCARQ8IYS5 282 aa14.21□□□□□ -0.13
CCL28-204ENST00000514421 TARBP1Q13395 1621 aaKnown RBP14.21□□□□□ -0.13
CCL28-204ENST00000514421 TOP2BQ02880 1626 aa14.18□□□□□ -0.14
CCL28-204ENST00000514421 SYNJ1O43426 1573 aa14.16□□□□□ -0.14
CCL28-204ENST00000514421 ABCA10Q8WWZ4 1543 aa14.15□□□□□ -0.14
CCL28-204ENST00000514421 FBLN2P98095 1184 aa14.15□□□□□ -0.14
CCL28-204ENST00000514421 MSH5O43196 834 aa14.13□□□□□ -0.15
CCL28-204ENST00000514421 GAPVD1Q14C86 1478 aa14.12□□□□□ -0.15
CCL28-204ENST00000514421 BIVM-ERCC5R4GMW8 1640 aa14.12□□□□□ -0.15
CCL28-204ENST00000514421 CHMP7Q8WUX9 453 aaPredicted RBP14.12□□□□□ -0.15
CCL28-204ENST00000514421 GRIN2BQ13224 1484 aa14.12□□□□□ -0.15
CCL28-204ENST00000514421 EIF4G3O43432 1585 aaKnown RBP14.11□□□□□ -0.15
CCL28-204ENST00000514421 TRIM41Q8WV44 630 aa14.11□□□□□ -0.15
CCL28-204ENST00000514421 WDR97A6NE52 1622 aa14.1□□□□□ -0.15
CCL28-204ENST00000514421 SNAPC4Q5SXM2 1469 aa14.05□□□□□ -0.16
CCL28-204ENST00000514421 MAGI1Q96QZ7 1491 aaPredicted RBP14.04□□□□□ -0.16
CCL28-204ENST00000514421 KIF27Q86VH2 1401 aa14.02□□□□□ -0.16
CCL28-204ENST00000514421 IGF1RP08069 1367 aa14.01□□□□□ -0.17
CCL28-204ENST00000514421 SYNJ2O15056 1496 aa14□□□□□ -0.17
CCL28-204ENST00000514421 ABCA5Q8WWZ7 1642 aa14□□□□□ -0.17
CCL28-204ENST00000514421 FHAD1B1AJZ9 1412 aa13.98□□□□□ -0.17
CCL28-204ENST00000514421 ERICH3Q5RHP9 1530 aa13.97□□□□□ -0.17
CCL28-204ENST00000514421 CARMIL1Q5VZK9 1371 aa13.92□□□□□ -0.18
CCL28-204ENST00000514421 PBRM1Q86U86 1689 aa13.91□□□□□ -0.18
CCL28-204ENST00000514421 GRIN2AQ12879 1464 aa13.9□□□□□ -0.18
CCL28-204ENST00000514421 CHD1O14646 1710 aa13.89□□□□□ -0.19
CCL28-204ENST00000514421 RUSC2Q8N2Y8 1516 aa13.88□□□□□ -0.19
CCL28-204ENST00000514421 ADAMTS12P58397 1594 aa13.87□□□□□ -0.19
CCL28-204ENST00000514421 NUP160Q12769 1436 aa13.86□□□□□ -0.19
CCL28-204ENST00000514421 CSRNP3Q8WYN3 585 aa13.85□□□□□ -0.19
CCL28-204ENST00000514421 JPH4Q96JJ6 628 aa13.85□□□□□ -0.19
CCL28-204ENST00000514421 CYB5RLQ6IPT4 315 aa13.84□□□□□ -0.19
CCL28-204ENST00000514421 CLASP1Q7Z460 1538 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms