RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 NISCHQ9Y2I1 1504 aa30.29■■■□□ 2.44
LIMCH1-220ENST00000514190 CCDC180Q9P1Z9 1646 aa26.79■■□□□ 1.88
LIMCH1-220ENST00000514190 ABCC9O60706 1549 aa26.38■■□□□ 1.81
LIMCH1-220ENST00000514190 ZCCHC6Q5VYS8 1495 aaKnown RBP25.34■■□□□ 1.65
LIMCH1-220ENST00000514190 RB1CC1Q8TDY2 1594 aa25.31■■□□□ 1.64
LIMCH1-220ENST00000514190 NACADO15069 1562 aa25.22■■□□□ 1.63
LIMCH1-220ENST00000514190 DCAF8L2P0C7V8 631 aa25.15■■□□□ 1.62
LIMCH1-220ENST00000514190 DCAF1Q9Y4B6 1507 aa25.07■■□□□ 1.6
LIMCH1-220ENST00000514190 MYO15BQ96JP2 1530 aa25.01■■□□□ 1.59
LIMCH1-220ENST00000514190 UNC13AQ9UPW8 1703 aa24.73■■□□□ 1.55
LIMCH1-220ENST00000514190 PABPN1Q86U42 306 aaKnown RBP eCLIP24.59■■□□□ 1.53
LIMCH1-220ENST00000514190 BICRAQ9NZM4 1560 aa24.54■■□□□ 1.52
LIMCH1-220ENST00000514190 SCRIBQ14160 1630 aa24.4■■□□□ 1.5
LIMCH1-220ENST00000514190 DNAJC5BQ9UF47 199 aa24.38■■□□□ 1.49
LIMCH1-220ENST00000514190 SHROOM4Q9ULL8 1493 aa24.35■■□□□ 1.49
LIMCH1-220ENST00000514190 EIF4G1Q04637 1599 aaKnown RBP23.91■■□□□ 1.42
LIMCH1-220ENST00000514190 CC2D2AQ9P2K1 1620 aa23.87■■□□□ 1.41
LIMCH1-220ENST00000514190 CECR2Q9BXF3 1484 aa23.74■■□□□ 1.39
LIMCH1-220ENST00000514190 BAZ1AQ9NRL2 1556 aaPredicted RBP23.4■■□□□ 1.34
LIMCH1-220ENST00000514190 MROH2BQ7Z745 1585 aa23.36■■□□□ 1.33
LIMCH1-220ENST00000514190 RSF1Q96T23 1441 aaPredicted RBP23.35■■□□□ 1.33
LIMCH1-220ENST00000514190 SMARCA4P51532 1647 aa23.33■■□□□ 1.32
LIMCH1-220ENST00000514190 SUPT5HO00267 1087 aaKnown RBP23.28■■□□□ 1.32
LIMCH1-220ENST00000514190 NCAPD3P42695 1498 aa23.26■■□□□ 1.31
LIMCH1-220ENST00000514190 ATAD2BQ9ULI0 1458 aa23.24■■□□□ 1.31
LIMCH1-220ENST00000514190 SMARCA2P51531 1590 aa23.21■■□□□ 1.31
LIMCH1-220ENST00000514190 HMGXB3Q12766 1538 aa23.14■■□□□ 1.3
LIMCH1-220ENST00000514190 PEG3Q9GZU2 1588 aa23.1■■□□□ 1.29
LIMCH1-220ENST00000514190 WIZO95785 1651 aa23.09■■□□□ 1.29
LIMCH1-220ENST00000514190 BAZ1BQ9UIG0 1483 aaKnown RBP23.04■■□□□ 1.28
LIMCH1-220ENST00000514190 TOP2AP11388 1531 aaKnown RBP22.89■■□□□ 1.26
LIMCH1-220ENST00000514190 NESP48681 1621 aa22.76■■□□□ 1.23
LIMCH1-220ENST00000514190 ERCC6Q03468 1493 aa22.76■■□□□ 1.23
LIMCH1-220ENST00000514190 LAMC3Q9Y6N6 1575 aa22.69■■□□□ 1.22
LIMCH1-220ENST00000514190 CCDC88BA6NC98 1476 aa22.68■■□□□ 1.22
LIMCH1-220ENST00000514190 CUX2O14529 1486 aa22.61■■□□□ 1.21
LIMCH1-220ENST00000514190 CADPSQ9ULU8 1353 aa22.56■■□□□ 1.2
LIMCH1-220ENST00000514190 PDS5BQ9NTI5 1447 aa22.54■■□□□ 1.2
LIMCH1-220ENST00000514190 KIF21AQ7Z4S6 1674 aa22.51■■□□□ 1.19
LIMCH1-220ENST00000514190 THOC2Q8NI27 1593 aaKnown RBP22.5■■□□□ 1.19
LIMCH1-220ENST00000514190 CFTRP13569 1480 aa22.39■■□□□ 1.17
LIMCH1-220ENST00000514190 MRC2Q9UBG0 1479 aa22.33■■□□□ 1.16
LIMCH1-220ENST00000514190 FANCD2Q9BXW9 1451 aa22.31■■□□□ 1.16
LIMCH1-220ENST00000514190 CEP164Q9UPV0 1460 aa22.31■■□□□ 1.16
LIMCH1-220ENST00000514190 WDR62O43379 1518 aa22.26■■□□□ 1.15
LIMCH1-220ENST00000514190 PRDM2Q13029 1718 aa22.24■■□□□ 1.15
LIMCH1-220ENST00000514190 DNAJC5Q9H3Z4 198 aa22.14■■□□□ 1.13
LIMCH1-220ENST00000514190 CHIC1Q5VXU3 224 aa22.11■■□□□ 1.13
LIMCH1-220ENST00000514190 URB2Q14146 1524 aaKnown RBP22.11■■□□□ 1.13
LIMCH1-220ENST00000514190 ABCC8Q09428 1581 aa21.99■■□□□ 1.11
LIMCH1-220ENST00000514190 WRNQ14191 1432 aaPredicted RBP eCLIP21.98■■□□□ 1.11
LIMCH1-220ENST00000514190 TRIM41Q8WV44 630 aa21.96■■□□□ 1.11
LIMCH1-220ENST00000514190 TOPBP1Q92547 1522 aa21.93■■□□□ 1.1
LIMCH1-220ENST00000514190 DNMBPQ6XZF7 1577 aa21.9■■□□□ 1.1
LIMCH1-220ENST00000514190 CUX1P39880 1505 aa21.87■■□□□ 1.09
LIMCH1-220ENST00000514190 IFT140Q96RY7 1462 aa21.85■■□□□ 1.09
LIMCH1-220ENST00000514190 SYNJ1O43426 1573 aa21.84■■□□□ 1.09
LIMCH1-220ENST00000514190 TOP2BQ02880 1626 aa21.81■■□□□ 1.08
LIMCH1-220ENST00000514190 BIVM-ERCC5R4GMW8 1640 aa21.78■■□□□ 1.08
LIMCH1-220ENST00000514190 ZNF608Q9ULD9 1512 aaPredicted RBP21.76■■□□□ 1.07
LIMCH1-220ENST00000514190 POLA1P09884 1462 aaPredicted RBP21.74■■□□□ 1.07
LIMCH1-220ENST00000514190 TARBP1Q13395 1621 aaKnown RBP21.73■■□□□ 1.07
LIMCH1-220ENST00000514190 EIF4G3O43432 1585 aaKnown RBP21.7■■□□□ 1.06
LIMCH1-220ENST00000514190 FGD5Q6ZNL6 1462 aa21.69■■□□□ 1.06
LIMCH1-220ENST00000514190 RAD54L2Q9Y4B4 1467 aa21.63■■□□□ 1.05
LIMCH1-220ENST00000514190 SOGA1O94964 1423 aa21.63■■□□□ 1.05
LIMCH1-220ENST00000514190 AQRO60306 1485 aaKnown RBP eCLIP21.6■■□□□ 1.05
LIMCH1-220ENST00000514190 OSCARQ8IYS5 282 aa21.6■■□□□ 1.05
LIMCH1-220ENST00000514190 WDR97A6NE52 1622 aa21.55■■□□□ 1.04
LIMCH1-220ENST00000514190 TDRD9Q8NDG6 1382 aaKnown RBP21.52■■□□□ 1.04
LIMCH1-220ENST00000514190 ABCA10Q8WWZ4 1543 aa21.52■■□□□ 1.04
LIMCH1-220ENST00000514190 KIF27Q86VH2 1401 aa21.49■■□□□ 1.03
LIMCH1-220ENST00000514190 FAM9AQ8IZU1 332 aaPredicted RBP21.49■■□□□ 1.03
LIMCH1-220ENST00000514190 RUSC2Q8N2Y8 1516 aa21.49■■□□□ 1.03
LIMCH1-220ENST00000514190 EEA1Q15075 1411 aa21.48■■□□□ 1.03
LIMCH1-220ENST00000514190 CHD1O14646 1710 aa21.46■■□□□ 1.03
LIMCH1-220ENST00000514190 CSRNP3Q8WYN3 585 aa21.43■■□□□ 1.02
LIMCH1-220ENST00000514190 GRIN2BQ13224 1484 aa21.41■■□□□ 1.02
LIMCH1-220ENST00000514190 SNAPC4Q5SXM2 1469 aa21.41■■□□□ 1.02
LIMCH1-220ENST00000514190 GAPVD1Q14C86 1478 aa21.39■■□□□ 1.01
LIMCH1-220ENST00000514190 MAGI1Q96QZ7 1491 aaPredicted RBP21.39■■□□□ 1.01
LIMCH1-220ENST00000514190 ABCA5Q8WWZ7 1642 aa21.38■■□□□ 1.01
LIMCH1-220ENST00000514190 PBRM1Q86U86 1689 aa21.37■■□□□ 1.01
LIMCH1-220ENST00000514190 FBLN2P98095 1184 aa21.37■■□□□ 1.01
LIMCH1-220ENST00000514190 IGF1RP08069 1367 aa21.36■■□□□ 1.01
LIMCH1-220ENST00000514190 RIMBP3CA6NJZ7 1639 aa21.31■■□□□ 1
LIMCH1-220ENST00000514190 RIMBP3BA6NNM3 1639 aa21.31■■□□□ 1
LIMCH1-220ENST00000514190 RIMBP3Q9UFD9 1639 aa21.31■■□□□ 1
LIMCH1-220ENST00000514190 SYNJ2O15056 1496 aa21.31■■□□□ 1
LIMCH1-220ENST00000514190 ARHGEF11O15085 1522 aa21.29■■□□□ 1
LIMCH1-220ENST00000514190 CHMP7Q8WUX9 453 aaPredicted RBP21.28■■□□□ 1
LIMCH1-220ENST00000514190 ERICH3Q5RHP9 1530 aa21.25■□□□□ 0.99
LIMCH1-220ENST00000514190 CARMIL1Q5VZK9 1371 aa21.23■□□□□ 0.99
LIMCH1-220ENST00000514190 LOC105371045A0A1W2PR82 267 aa21.23■□□□□ 0.99
LIMCH1-220ENST00000514190 PRXQ9BXM0 1461 aa21.23■□□□□ 0.99
LIMCH1-220ENST00000514190 CLASP1Q7Z460 1538 aa21.22■□□□□ 0.99
LIMCH1-220ENST00000514190 ADAMTS12P58397 1594 aa21.19■□□□□ 0.98
LIMCH1-220ENST00000514190 EHMT2Q96KQ7 1210 aa21.15■□□□□ 0.98
LIMCH1-220ENST00000514190 KIF21BO75037 1637 aa21.15■□□□□ 0.98
LIMCH1-220ENST00000514190 GRIN2AQ12879 1464 aa21.14■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms