RNA–Protein interactions for RNA: ENST00000513841.1

ARHGEF28-213, Transcript of Rho guanine nucleotide exchange factor 28, humanhuman

TSL 3

Gene ARHGEF28, Length 710 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF28-213ENST00000513841 NISCHQ9Y2I1 1504 aa28.13■■■□□ 2.09
ARHGEF28-213ENST00000513841 CCDC180Q9P1Z9 1646 aa24.94■■□□□ 1.58
ARHGEF28-213ENST00000513841 ABCC9O60706 1549 aa24.8■■□□□ 1.56
ARHGEF28-213ENST00000513841 DCAF8L2P0C7V8 631 aa23.9■■□□□ 1.42
ARHGEF28-213ENST00000513841 RB1CC1Q8TDY2 1594 aa23.68■■□□□ 1.38
ARHGEF28-213ENST00000513841 NACADO15069 1562 aa23.61■■□□□ 1.37
ARHGEF28-213ENST00000513841 MYO15BQ96JP2 1530 aa23.37■■□□□ 1.33
ARHGEF28-213ENST00000513841 ZCCHC6Q5VYS8 1495 aaKnown RBP23.31■■□□□ 1.32
ARHGEF28-213ENST00000513841 PABPN1Q86U42 306 aaKnown RBP eCLIP23.28■■□□□ 1.32
ARHGEF28-213ENST00000513841 DCAF1Q9Y4B6 1507 aa23.2■■□□□ 1.3
ARHGEF28-213ENST00000513841 DNAJC5BQ9UF47 199 aa23.07■■□□□ 1.28
ARHGEF28-213ENST00000513841 UNC13AQ9UPW8 1703 aa23.01■■□□□ 1.27
ARHGEF28-213ENST00000513841 BICRAQ9NZM4 1560 aa22.93■■□□□ 1.26
ARHGEF28-213ENST00000513841 SCRIBQ14160 1630 aa22.82■■□□□ 1.24
ARHGEF28-213ENST00000513841 SHROOM4Q9ULL8 1493 aa22.64■■□□□ 1.21
ARHGEF28-213ENST00000513841 EIF4G1Q04637 1599 aaKnown RBP22.37■■□□□ 1.17
ARHGEF28-213ENST00000513841 CC2D2AQ9P2K1 1620 aa22.34■■□□□ 1.17
ARHGEF28-213ENST00000513841 CECR2Q9BXF3 1484 aa22.29■■□□□ 1.16
ARHGEF28-213ENST00000513841 NCAPD3P42695 1498 aa21.86■■□□□ 1.09
ARHGEF28-213ENST00000513841 ATAD2BQ9ULI0 1458 aa21.83■■□□□ 1.08
ARHGEF28-213ENST00000513841 SMARCA4P51532 1647 aa21.79■■□□□ 1.08
ARHGEF28-213ENST00000513841 BAZ1AQ9NRL2 1556 aaPredicted RBP21.78■■□□□ 1.08
ARHGEF28-213ENST00000513841 SMARCA2P51531 1590 aa21.74■■□□□ 1.07
ARHGEF28-213ENST00000513841 MROH2BQ7Z745 1585 aa21.67■■□□□ 1.06
ARHGEF28-213ENST00000513841 BAZ1BQ9UIG0 1483 aaKnown RBP21.61■■□□□ 1.05
ARHGEF28-213ENST00000513841 HMGXB3Q12766 1538 aa21.6■■□□□ 1.05
ARHGEF28-213ENST00000513841 PEG3Q9GZU2 1588 aa21.57■■□□□ 1.04
ARHGEF28-213ENST00000513841 RSF1Q96T23 1441 aaPredicted RBP21.4■■□□□ 1.02
ARHGEF28-213ENST00000513841 WIZO95785 1651 aa21.4■■□□□ 1.02
ARHGEF28-213ENST00000513841 ERCC6Q03468 1493 aa21.39■■□□□ 1.02
ARHGEF28-213ENST00000513841 NESP48681 1621 aa21.37■■□□□ 1.01
ARHGEF28-213ENST00000513841 CADPSQ9ULU8 1353 aa21.25■□□□□ 0.99
ARHGEF28-213ENST00000513841 LAMC3Q9Y6N6 1575 aa21.23■□□□□ 0.99
ARHGEF28-213ENST00000513841 PDS5BQ9NTI5 1447 aa21.21■□□□□ 0.99
ARHGEF28-213ENST00000513841 CUX2O14529 1486 aa21.17■□□□□ 0.98
ARHGEF28-213ENST00000513841 TOP2AP11388 1531 aaKnown RBP21.14■□□□□ 0.97
ARHGEF28-213ENST00000513841 CFTRP13569 1480 aa21.02■□□□□ 0.96
ARHGEF28-213ENST00000513841 CCDC88BA6NC98 1476 aa21■□□□□ 0.95
ARHGEF28-213ENST00000513841 KIF21AQ7Z4S6 1674 aa20.99■□□□□ 0.95
ARHGEF28-213ENST00000513841 FANCD2Q9BXW9 1451 aa20.95■□□□□ 0.94
ARHGEF28-213ENST00000513841 THOC2Q8NI27 1593 aaKnown RBP20.95■□□□□ 0.94
ARHGEF28-213ENST00000513841 DNAJC5Q9H3Z4 198 aa20.95■□□□□ 0.94
ARHGEF28-213ENST00000513841 MRC2Q9UBG0 1479 aa20.93■□□□□ 0.94
ARHGEF28-213ENST00000513841 CEP164Q9UPV0 1460 aa20.92■□□□□ 0.94
ARHGEF28-213ENST00000513841 SUPT5HO00267 1087 aaKnown RBP20.9■□□□□ 0.94
ARHGEF28-213ENST00000513841 WDR62O43379 1518 aa20.8■□□□□ 0.92
ARHGEF28-213ENST00000513841 URB2Q14146 1524 aaKnown RBP20.72■□□□□ 0.91
ARHGEF28-213ENST00000513841 PRDM2Q13029 1718 aa20.62■□□□□ 0.89
ARHGEF28-213ENST00000513841 ABCC8Q09428 1581 aa20.6■□□□□ 0.89
ARHGEF28-213ENST00000513841 TOPBP1Q92547 1522 aa20.58■□□□□ 0.88
ARHGEF28-213ENST00000513841 IFT140Q96RY7 1462 aa20.5■□□□□ 0.87
ARHGEF28-213ENST00000513841 DNMBPQ6XZF7 1577 aa20.47■□□□□ 0.87
ARHGEF28-213ENST00000513841 OSCARQ8IYS5 282 aa20.47■□□□□ 0.87
ARHGEF28-213ENST00000513841 ZNF608Q9ULD9 1512 aaPredicted RBP20.43■□□□□ 0.86
ARHGEF28-213ENST00000513841 SOGA1O94964 1423 aa20.41■□□□□ 0.86
ARHGEF28-213ENST00000513841 POLA1P09884 1462 aaPredicted RBP20.37■□□□□ 0.85
ARHGEF28-213ENST00000513841 AQRO60306 1485 aaKnown RBP eCLIP20.37■□□□□ 0.85
ARHGEF28-213ENST00000513841 RAD54L2Q9Y4B4 1467 aa20.36■□□□□ 0.85
ARHGEF28-213ENST00000513841 TDRD9Q8NDG6 1382 aaKnown RBP20.33■□□□□ 0.84
ARHGEF28-213ENST00000513841 CUX1P39880 1505 aa20.32■□□□□ 0.84
ARHGEF28-213ENST00000513841 FGD5Q6ZNL6 1462 aa20.3■□□□□ 0.84
ARHGEF28-213ENST00000513841 TARBP1Q13395 1621 aaKnown RBP20.3■□□□□ 0.84
ARHGEF28-213ENST00000513841 FBLN2P98095 1184 aa20.29■□□□□ 0.84
ARHGEF28-213ENST00000513841 EIF4G3O43432 1585 aaKnown RBP20.22■□□□□ 0.83
ARHGEF28-213ENST00000513841 TRIM41Q8WV44 630 aa20.21■□□□□ 0.83
ARHGEF28-213ENST00000513841 WRNQ14191 1432 aaPredicted RBP eCLIP20.19■□□□□ 0.82
ARHGEF28-213ENST00000513841 CHMP7Q8WUX9 453 aaPredicted RBP20.17■□□□□ 0.82
ARHGEF28-213ENST00000513841 GRIN2BQ13224 1484 aa20.11■□□□□ 0.81
ARHGEF28-213ENST00000513841 GAPVD1Q14C86 1478 aa20.1■□□□□ 0.81
ARHGEF28-213ENST00000513841 ABCA10Q8WWZ4 1543 aa20.09■□□□□ 0.81
ARHGEF28-213ENST00000513841 WDR97A6NE52 1622 aa20.08■□□□□ 0.8
ARHGEF28-213ENST00000513841 SNAPC4Q5SXM2 1469 aa20.07■□□□□ 0.8
ARHGEF28-213ENST00000513841 TOP2BQ02880 1626 aa20.06■□□□□ 0.8
ARHGEF28-213ENST00000513841 SYNJ1O43426 1573 aa20.04■□□□□ 0.8
ARHGEF28-213ENST00000513841 MAGI1Q96QZ7 1491 aaPredicted RBP20.04■□□□□ 0.8
ARHGEF28-213ENST00000513841 BIVM-ERCC5R4GMW8 1640 aa20.01■□□□□ 0.79
ARHGEF28-213ENST00000513841 CHD1O14646 1710 aa20■□□□□ 0.79
ARHGEF28-213ENST00000513841 CYB5RLQ6IPT4 315 aa19.99■□□□□ 0.79
ARHGEF28-213ENST00000513841 SYNJ2O15056 1496 aa19.99■□□□□ 0.79
ARHGEF28-213ENST00000513841 ARHGEF11O15085 1522 aa19.94■□□□□ 0.78
ARHGEF28-213ENST00000513841 ABCA5Q8WWZ7 1642 aa19.94■□□□□ 0.78
ARHGEF28-213ENST00000513841 RIMBP3CA6NJZ7 1639 aa19.92■□□□□ 0.78
ARHGEF28-213ENST00000513841 RIMBP3BA6NNM3 1639 aa19.92■□□□□ 0.78
ARHGEF28-213ENST00000513841 RIMBP3Q9UFD9 1639 aa19.92■□□□□ 0.78
ARHGEF28-213ENST00000513841 PBRM1Q86U86 1689 aa19.9■□□□□ 0.78
ARHGEF28-213ENST00000513841 FHAD1B1AJZ9 1412 aa19.86■□□□□ 0.77
ARHGEF28-213ENST00000513841 ERICH3Q5RHP9 1530 aa19.82■□□□□ 0.76
ARHGEF28-213ENST00000513841 GRIN2AQ12879 1464 aa19.82■□□□□ 0.76
ARHGEF28-213ENST00000513841 CLASP1Q7Z460 1538 aa19.81■□□□□ 0.76
ARHGEF28-213ENST00000513841 KIF27Q86VH2 1401 aa19.81■□□□□ 0.76
ARHGEF28-213ENST00000513841 IGF1RP08069 1367 aa19.81■□□□□ 0.76
ARHGEF28-213ENST00000513841 ADAMTS12P58397 1594 aa19.76■□□□□ 0.75
ARHGEF28-213ENST00000513841 ARAP1Q96P48 1450 aa19.76■□□□□ 0.75
ARHGEF28-213ENST00000513841 NUP160Q12769 1436 aa19.74■□□□□ 0.75
ARHGEF28-213ENST00000513841 JPH4Q96JJ6 628 aa19.73■□□□□ 0.75
ARHGEF28-213ENST00000513841 CEP170Q5SW79 1584 aa19.69■□□□□ 0.74
ARHGEF28-213ENST00000513841 TRHP20396 242 aaPredicted RBP19.67■□□□□ 0.74
ARHGEF28-213ENST00000513841 CARMIL1Q5VZK9 1371 aa19.67■□□□□ 0.74
ARHGEF28-213ENST00000513841 PRG4Q92954 1404 aaPredicted RBP19.6■□□□□ 0.73
ARHGEF28-213ENST00000513841 ERCC6L2Q5T890 1561 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms