RNA–Protein interactions for RNA: ENST00000513821.5

SGCA-209, Transcript of sarcoglycan alpha, humanhuman

TSL 2

Gene SGCA, Length 1,090 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCA-209ENST00000513821 NISCHQ9Y2I1 1504 aa33.61■■■□□ 2.97
SGCA-209ENST00000513821 CCDC180Q9P1Z9 1646 aa29.89■■■□□ 2.37
SGCA-209ENST00000513821 ABCC9O60706 1549 aa29.47■■■□□ 2.31
SGCA-209ENST00000513821 DCAF8L2P0C7V8 631 aa28.34■■■□□ 2.13
SGCA-209ENST00000513821 RB1CC1Q8TDY2 1594 aa28.29■■■□□ 2.12
SGCA-209ENST00000513821 NACADO15069 1562 aa28.24■■■□□ 2.11
SGCA-209ENST00000513821 MYO15BQ96JP2 1530 aa28.02■■■□□ 2.08
SGCA-209ENST00000513821 ZCCHC6Q5VYS8 1495 aaKnown RBP27.9■■■□□ 2.06
SGCA-209ENST00000513821 DCAF1Q9Y4B6 1507 aa27.82■■■□□ 2.04
SGCA-209ENST00000513821 PABPN1Q86U42 306 aaKnown RBP eCLIP27.59■■■□□ 2.01
SGCA-209ENST00000513821 UNC13AQ9UPW8 1703 aa27.49■■□□□ 1.99
SGCA-209ENST00000513821 BICRAQ9NZM4 1560 aa27.36■■□□□ 1.97
SGCA-209ENST00000513821 DNAJC5BQ9UF47 199 aa27.28■■□□□ 1.96
SGCA-209ENST00000513821 SCRIBQ14160 1630 aa27.23■■□□□ 1.95
SGCA-209ENST00000513821 SHROOM4Q9ULL8 1493 aa27.15■■□□□ 1.94
SGCA-209ENST00000513821 EIF4G1Q04637 1599 aaKnown RBP26.68■■□□□ 1.86
SGCA-209ENST00000513821 CC2D2AQ9P2K1 1620 aa26.62■■□□□ 1.85
SGCA-209ENST00000513821 CECR2Q9BXF3 1484 aa26.54■■□□□ 1.84
SGCA-209ENST00000513821 NCAPD3P42695 1498 aa26.09■■□□□ 1.77
SGCA-209ENST00000513821 BAZ1AQ9NRL2 1556 aaPredicted RBP26.06■■□□□ 1.76
SGCA-209ENST00000513821 SMARCA4P51532 1647 aa26.06■■□□□ 1.76
SGCA-209ENST00000513821 ATAD2BQ9ULI0 1458 aa26.04■■□□□ 1.76
SGCA-209ENST00000513821 SMARCA2P51531 1590 aa26■■□□□ 1.75
SGCA-209ENST00000513821 MROH2BQ7Z745 1585 aa25.86■■□□□ 1.73
SGCA-209ENST00000513821 HMGXB3Q12766 1538 aa25.86■■□□□ 1.73
SGCA-209ENST00000513821 PEG3Q9GZU2 1588 aa25.82■■□□□ 1.72
SGCA-209ENST00000513821 BAZ1BQ9UIG0 1483 aaKnown RBP25.8■■□□□ 1.72
SGCA-209ENST00000513821 RSF1Q96T23 1441 aaPredicted RBP25.56■■□□□ 1.68
SGCA-209ENST00000513821 WIZO95785 1651 aa25.54■■□□□ 1.68
SGCA-209ENST00000513821 ERCC6Q03468 1493 aa25.47■■□□□ 1.67
SGCA-209ENST00000513821 NESP48681 1621 aa25.42■■□□□ 1.66
SGCA-209ENST00000513821 LAMC3Q9Y6N6 1575 aa25.37■■□□□ 1.65
SGCA-209ENST00000513821 CADPSQ9ULU8 1353 aa25.34■■□□□ 1.65
SGCA-209ENST00000513821 PDS5BQ9NTI5 1447 aa25.3■■□□□ 1.64
SGCA-209ENST00000513821 TOP2AP11388 1531 aaKnown RBP25.29■■□□□ 1.64
SGCA-209ENST00000513821 CUX2O14529 1486 aa25.26■■□□□ 1.63
SGCA-209ENST00000513821 CFTRP13569 1480 aa25.1■■□□□ 1.61
SGCA-209ENST00000513821 CCDC88BA6NC98 1476 aa25.05■■□□□ 1.6
SGCA-209ENST00000513821 KIF21AQ7Z4S6 1674 aa25.04■■□□□ 1.6
SGCA-209ENST00000513821 THOC2Q8NI27 1593 aaKnown RBP25.01■■□□□ 1.59
SGCA-209ENST00000513821 FANCD2Q9BXW9 1451 aa24.99■■□□□ 1.59
SGCA-209ENST00000513821 MRC2Q9UBG0 1479 aa24.96■■□□□ 1.59
SGCA-209ENST00000513821 CEP164Q9UPV0 1460 aa24.96■■□□□ 1.59
SGCA-209ENST00000513821 SUPT5HO00267 1087 aaKnown RBP24.89■■□□□ 1.58
SGCA-209ENST00000513821 WDR62O43379 1518 aa24.84■■□□□ 1.57
SGCA-209ENST00000513821 DNAJC5Q9H3Z4 198 aa24.8■■□□□ 1.56
SGCA-209ENST00000513821 PRDM2Q13029 1718 aa24.75■■□□□ 1.55
SGCA-209ENST00000513821 URB2Q14146 1524 aaKnown RBP24.71■■□□□ 1.55
SGCA-209ENST00000513821 ABCC8Q09428 1581 aa24.65■■□□□ 1.54
SGCA-209ENST00000513821 TOPBP1Q92547 1522 aa24.56■■□□□ 1.52
SGCA-209ENST00000513821 IFT140Q96RY7 1462 aa24.49■■□□□ 1.51
SGCA-209ENST00000513821 DNMBPQ6XZF7 1577 aa24.49■■□□□ 1.51
SGCA-209ENST00000513821 OSCARQ8IYS5 282 aa24.33■■□□□ 1.49
SGCA-209ENST00000513821 POLA1P09884 1462 aaPredicted RBP24.32■■□□□ 1.48
SGCA-209ENST00000513821 ZNF608Q9ULD9 1512 aaPredicted RBP24.32■■□□□ 1.48
SGCA-209ENST00000513821 SOGA1O94964 1423 aa24.32■■□□□ 1.48
SGCA-209ENST00000513821 CUX1P39880 1505 aa24.26■■□□□ 1.47
SGCA-209ENST00000513821 TARBP1Q13395 1621 aaKnown RBP24.24■■□□□ 1.47
SGCA-209ENST00000513821 FGD5Q6ZNL6 1462 aa24.23■■□□□ 1.47
SGCA-209ENST00000513821 RAD54L2Q9Y4B4 1467 aa24.23■■□□□ 1.47
SGCA-209ENST00000513821 AQRO60306 1485 aaKnown RBP eCLIP24.22■■□□□ 1.47
SGCA-209ENST00000513821 TDRD9Q8NDG6 1382 aaKnown RBP24.18■■□□□ 1.46
SGCA-209ENST00000513821 EIF4G3O43432 1585 aaKnown RBP24.15■■□□□ 1.46
SGCA-209ENST00000513821 WRNQ14191 1432 aaPredicted RBP eCLIP24.12■■□□□ 1.45
SGCA-209ENST00000513821 WDR97A6NE52 1622 aa24.1■■□□□ 1.45
SGCA-209ENST00000513821 FBLN2P98095 1184 aa24.08■■□□□ 1.45
SGCA-209ENST00000513821 ABCA10Q8WWZ4 1543 aa24.02■■□□□ 1.44
SGCA-209ENST00000513821 TOP2BQ02880 1626 aa24.02■■□□□ 1.44
SGCA-209ENST00000513821 GRIN2BQ13224 1484 aa24.01■■□□□ 1.43
SGCA-209ENST00000513821 CHMP7Q8WUX9 453 aaPredicted RBP24■■□□□ 1.43
SGCA-209ENST00000513821 GAPVD1Q14C86 1478 aa23.99■■□□□ 1.43
SGCA-209ENST00000513821 BIVM-ERCC5R4GMW8 1640 aa23.99■■□□□ 1.43
SGCA-209ENST00000513821 MAGI1Q96QZ7 1491 aaPredicted RBP23.95■■□□□ 1.42
SGCA-209ENST00000513821 SYNJ1O43426 1573 aa23.95■■□□□ 1.42
SGCA-209ENST00000513821 SNAPC4Q5SXM2 1469 aa23.94■■□□□ 1.42
SGCA-209ENST00000513821 CHD1O14646 1710 aa23.87■■□□□ 1.41
SGCA-209ENST00000513821 TRIM41Q8WV44 630 aa23.87■■□□□ 1.41
SGCA-209ENST00000513821 SYNJ2O15056 1496 aa23.86■■□□□ 1.41
SGCA-209ENST00000513821 ABCA5Q8WWZ7 1642 aa23.84■■□□□ 1.41
SGCA-209ENST00000513821 PBRM1Q86U86 1689 aa23.8■■□□□ 1.4
SGCA-209ENST00000513821 ARHGEF11O15085 1522 aa23.74■■□□□ 1.39
SGCA-209ENST00000513821 FHAD1B1AJZ9 1412 aa23.73■■□□□ 1.39
SGCA-209ENST00000513821 ERICH3Q5RHP9 1530 aa23.73■■□□□ 1.39
SGCA-209ENST00000513821 RIMBP3CA6NJZ7 1639 aa23.73■■□□□ 1.39
SGCA-209ENST00000513821 RIMBP3BA6NNM3 1639 aa23.73■■□□□ 1.39
SGCA-209ENST00000513821 RIMBP3Q9UFD9 1639 aa23.73■■□□□ 1.39
SGCA-209ENST00000513821 CYB5RLQ6IPT4 315 aa23.69■■□□□ 1.38
SGCA-209ENST00000513821 KIF27Q86VH2 1401 aa23.67■■□□□ 1.38
SGCA-209ENST00000513821 GRIN2AQ12879 1464 aa23.66■■□□□ 1.38
SGCA-209ENST00000513821 CLASP1Q7Z460 1538 aa23.65■■□□□ 1.38
SGCA-209ENST00000513821 ADAMTS12P58397 1594 aa23.63■■□□□ 1.37
SGCA-209ENST00000513821 IGF1RP08069 1367 aa23.62■■□□□ 1.37
SGCA-209ENST00000513821 NUP160Q12769 1436 aa23.57■■□□□ 1.36
SGCA-209ENST00000513821 ARAP1Q96P48 1450 aa23.51■■□□□ 1.35
SGCA-209ENST00000513821 CEP170Q5SW79 1584 aa23.48■■□□□ 1.35
SGCA-209ENST00000513821 JPH4Q96JJ6 628 aa23.48■■□□□ 1.35
SGCA-209ENST00000513821 CARMIL1Q5VZK9 1371 aa23.48■■□□□ 1.35
SGCA-209ENST00000513821 CUL7Q14999 1698 aa23.43■■□□□ 1.34
SGCA-209ENST00000513821 KIAA0586Q9BVV6 1533 aa23.36■■□□□ 1.33
SGCA-209ENST00000513821 PRG4Q92954 1404 aaPredicted RBP23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms