RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 NISCHQ9Y2I1 1504 aa23.54■■□□□ 1.36
TOPBP1-209ENST00000513818 AEBP2Q6ZN18 517 aaPredicted RBP21.73■■□□□ 1.07
TOPBP1-209ENST00000513818 CCDC180Q9P1Z9 1646 aa20.84■□□□□ 0.93
TOPBP1-209ENST00000513818 CHIC1Q5VXU3 224 aa20.83■□□□□ 0.93
TOPBP1-209ENST00000513818 ABCC9O60706 1549 aa20.26■□□□□ 0.83
TOPBP1-209ENST00000513818 ZCCHC6Q5VYS8 1495 aaKnown RBP19.67■□□□□ 0.74
TOPBP1-209ENST00000513818 DCAF8L2P0C7V8 631 aa19.59■□□□□ 0.73
TOPBP1-209ENST00000513818 NACADO15069 1562 aa19.5■□□□□ 0.71
TOPBP1-209ENST00000513818 RB1CC1Q8TDY2 1594 aa19.5■□□□□ 0.71
TOPBP1-209ENST00000513818 DCAF1Q9Y4B6 1507 aa19.41■□□□□ 0.7
TOPBP1-209ENST00000513818 MYO15BQ96JP2 1530 aa19.39■□□□□ 0.69
TOPBP1-209ENST00000513818 UNC13AQ9UPW8 1703 aa19.17■□□□□ 0.66
TOPBP1-209ENST00000513818 SCRIBQ14160 1630 aa19.14■□□□□ 0.65
TOPBP1-209ENST00000513818 BICRAQ9NZM4 1560 aa18.96■□□□□ 0.63
TOPBP1-209ENST00000513818 PABPN1Q86U42 306 aaKnown RBP eCLIP18.94■□□□□ 0.62
TOPBP1-209ENST00000513818 SHROOM4Q9ULL8 1493 aa18.84■□□□□ 0.61
TOPBP1-209ENST00000513818 EIF4G1Q04637 1599 aaKnown RBP18.43■□□□□ 0.54
TOPBP1-209ENST00000513818 SENP3Q9H4L4 574 aaPredicted RBP18.41■□□□□ 0.54
TOPBP1-209ENST00000513818 CECR2Q9BXF3 1484 aa18.36■□□□□ 0.53
TOPBP1-209ENST00000513818 DNAJC5BQ9UF47 199 aa18.36■□□□□ 0.53
TOPBP1-209ENST00000513818 PHF23Q9BUL5 403 aaPredicted RBP18.34■□□□□ 0.53
TOPBP1-209ENST00000513818 CC2D2AQ9P2K1 1620 aa18.31■□□□□ 0.52
TOPBP1-209ENST00000513818 SMARCA4P51532 1647 aa18.26■□□□□ 0.51
TOPBP1-209ENST00000513818 BAZ1AQ9NRL2 1556 aaPredicted RBP18.21■□□□□ 0.51
TOPBP1-209ENST00000513818 MROH2BQ7Z745 1585 aa18.19■□□□□ 0.5
TOPBP1-209ENST00000513818 ATAD2BQ9ULI0 1458 aa18.07■□□□□ 0.48
TOPBP1-209ENST00000513818 WIZO95785 1651 aa18.03■□□□□ 0.48
TOPBP1-209ENST00000513818 SMARCA2P51531 1590 aa18.03■□□□□ 0.48
TOPBP1-209ENST00000513818 PEG3Q9GZU2 1588 aa18.01■□□□□ 0.47
TOPBP1-209ENST00000513818 RSF1Q96T23 1441 aaPredicted RBP18.01■□□□□ 0.47
TOPBP1-209ENST00000513818 NCAPD3P42695 1498 aa17.97■□□□□ 0.47
TOPBP1-209ENST00000513818 HMGXB3Q12766 1538 aa17.95■□□□□ 0.46
TOPBP1-209ENST00000513818 BAZ1BQ9UIG0 1483 aaKnown RBP17.95■□□□□ 0.46
TOPBP1-209ENST00000513818 TOP2AP11388 1531 aaKnown RBP17.81■□□□□ 0.44
TOPBP1-209ENST00000513818 SUPT5HO00267 1087 aaKnown RBP17.75■□□□□ 0.43
TOPBP1-209ENST00000513818 NESP48681 1621 aa17.6■□□□□ 0.41
TOPBP1-209ENST00000513818 CCDC88BA6NC98 1476 aa17.58■□□□□ 0.41
TOPBP1-209ENST00000513818 LAMC3Q9Y6N6 1575 aa17.5■□□□□ 0.39
TOPBP1-209ENST00000513818 CADPSQ9ULU8 1353 aa17.47■□□□□ 0.39
TOPBP1-209ENST00000513818 CFTRP13569 1480 aa17.43■□□□□ 0.38
TOPBP1-209ENST00000513818 KIF21AQ7Z4S6 1674 aa17.42■□□□□ 0.38
TOPBP1-209ENST00000513818 ERCC6Q03468 1493 aa17.41■□□□□ 0.38
TOPBP1-209ENST00000513818 PRDM2Q13029 1718 aa17.38■□□□□ 0.37
TOPBP1-209ENST00000513818 PDS5BQ9NTI5 1447 aa17.34■□□□□ 0.37
TOPBP1-209ENST00000513818 FANCD2Q9BXW9 1451 aa17.32■□□□□ 0.36
TOPBP1-209ENST00000513818 THOC2Q8NI27 1593 aaKnown RBP17.29■□□□□ 0.36
TOPBP1-209ENST00000513818 CEP164Q9UPV0 1460 aa17.29■□□□□ 0.36
TOPBP1-209ENST00000513818 MRC2Q9UBG0 1479 aa17.21■□□□□ 0.35
TOPBP1-209ENST00000513818 FOXD1Q16676 465 aa17.19■□□□□ 0.34
TOPBP1-209ENST00000513818 URB2Q14146 1524 aaKnown RBP17.17■□□□□ 0.34
TOPBP1-209ENST00000513818 WDR62O43379 1518 aa17.16■□□□□ 0.34
TOPBP1-209ENST00000513818 ABCC8Q09428 1581 aa17.09■□□□□ 0.33
TOPBP1-209ENST00000513818 DNMBPQ6XZF7 1577 aa17.08■□□□□ 0.32
TOPBP1-209ENST00000513818 TOPBP1Q92547 1522 aa17.08■□□□□ 0.32
TOPBP1-209ENST00000513818 CUX2O14529 1486 aa17.08■□□□□ 0.32
TOPBP1-209ENST00000513818 CUX1P39880 1505 aa17.06■□□□□ 0.32
TOPBP1-209ENST00000513818 SYNJ1O43426 1573 aa17■□□□□ 0.31
TOPBP1-209ENST00000513818 WRNQ14191 1432 aaPredicted RBP eCLIP16.97■□□□□ 0.31
TOPBP1-209ENST00000513818 FGD5Q6ZNL6 1462 aa16.96■□□□□ 0.31
TOPBP1-209ENST00000513818 POLA1P09884 1462 aaPredicted RBP16.95■□□□□ 0.3
TOPBP1-209ENST00000513818 BIVM-ERCC5R4GMW8 1640 aa16.95■□□□□ 0.3
TOPBP1-209ENST00000513818 TOP2BQ02880 1626 aa16.92■□□□□ 0.3
TOPBP1-209ENST00000513818 RAD54L2Q9Y4B4 1467 aa16.91■□□□□ 0.3
TOPBP1-209ENST00000513818 TARBP1Q13395 1621 aaKnown RBP16.89■□□□□ 0.29
TOPBP1-209ENST00000513818 IFT140Q96RY7 1462 aa16.88■□□□□ 0.29
TOPBP1-209ENST00000513818 ZNF608Q9ULD9 1512 aaPredicted RBP16.86■□□□□ 0.29
TOPBP1-209ENST00000513818 WDR97A6NE52 1622 aa16.85■□□□□ 0.29
TOPBP1-209ENST00000513818 SOGA1O94964 1423 aa16.84■□□□□ 0.29
TOPBP1-209ENST00000513818 EIF4G3O43432 1585 aaKnown RBP16.83■□□□□ 0.28
TOPBP1-209ENST00000513818 AQRO60306 1485 aaKnown RBP eCLIP16.76■□□□□ 0.274e-6■□□□□ 10.8
TOPBP1-209ENST00000513818 TDRD9Q8NDG6 1382 aaKnown RBP16.76■□□□□ 0.27
TOPBP1-209ENST00000513818 ABCA10Q8WWZ4 1543 aa16.75■□□□□ 0.27
TOPBP1-209ENST00000513818 PLPPR3Q6T4P5 718 aa16.74■□□□□ 0.27
TOPBP1-209ENST00000513818 ABCA5Q8WWZ7 1642 aa16.73■□□□□ 0.27
TOPBP1-209ENST00000513818 PBRM1Q86U86 1689 aa16.7■□□□□ 0.26
TOPBP1-209ENST00000513818 TRIM41Q8WV44 630 aa16.68■□□□□ 0.26
TOPBP1-209ENST00000513818 GAPVD1Q14C86 1478 aa16.67■□□□□ 0.26
TOPBP1-209ENST00000513818 SNAPC4Q5SXM2 1469 aa16.64■□□□□ 0.25
TOPBP1-209ENST00000513818 GRIN2BQ13224 1484 aa16.62■□□□□ 0.25
TOPBP1-209ENST00000513818 RUSC2Q8N2Y8 1516 aa16.59■□□□□ 0.25
TOPBP1-209ENST00000513818 CHD1O14646 1710 aa16.59■□□□□ 0.25
TOPBP1-209ENST00000513818 KIF27Q86VH2 1401 aa16.58■□□□□ 0.24
TOPBP1-209ENST00000513818 ADAMTS12P58397 1594 aa16.57■□□□□ 0.24
TOPBP1-209ENST00000513818 MAGI1Q96QZ7 1491 aaPredicted RBP16.55■□□□□ 0.24
TOPBP1-209ENST00000513818 ERICH3Q5RHP9 1530 aa16.55■□□□□ 0.24
TOPBP1-209ENST00000513818 FBLN2P98095 1184 aa16.51■□□□□ 0.23
TOPBP1-209ENST00000513818 SYNJ2O15056 1496 aa16.49■□□□□ 0.23
TOPBP1-209ENST00000513818 CUL7Q14999 1698 aa16.47■□□□□ 0.23
TOPBP1-209ENST00000513818 IGF1RP08069 1367 aa16.47■□□□□ 0.23
TOPBP1-209ENST00000513818 FHAD1B1AJZ9 1412 aa16.46■□□□□ 0.23
TOPBP1-209ENST00000513818 GRIN2AQ12879 1464 aa16.44■□□□□ 0.22
TOPBP1-209ENST00000513818 CHMP7Q8WUX9 453 aaPredicted RBP16.44■□□□□ 0.22
TOPBP1-209ENST00000513818 FAM9AQ8IZU1 332 aaPredicted RBP16.43■□□□□ 0.22
TOPBP1-209ENST00000513818 CEP170Q5SW79 1584 aa16.4■□□□□ 0.22
TOPBP1-209ENST00000513818 CARMIL1Q5VZK9 1371 aa16.38■□□□□ 0.21
TOPBP1-209ENST00000513818 CLASP1Q7Z460 1538 aa16.36■□□□□ 0.21
TOPBP1-209ENST00000513818 OSCARQ8IYS5 282 aa16.36■□□□□ 0.21
TOPBP1-209ENST00000513818 EEA1Q15075 1411 aa16.36■□□□□ 0.21
TOPBP1-209ENST00000513818 NUP160Q12769 1436 aa16.34■□□□□ 0.21
TOPBP1-209ENST00000513818 PRXQ9BXM0 1461 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms