RNA–Protein interactions for RNA: ENST00000513806.1

HTT-213, Transcript of huntingtin, humanhuman

TSL 5

Gene HTT, Length 432 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HTT-213ENST00000513806 NISCHQ9Y2I1 1504 aa27.07■■□□□ 1.92
HTT-213ENST00000513806 CCDC180Q9P1Z9 1646 aa23.93■■□□□ 1.42
HTT-213ENST00000513806 ABCC9O60706 1549 aa23.24■■□□□ 1.31
HTT-213ENST00000513806 ZCCHC6Q5VYS8 1495 aaKnown RBP22.61■■□□□ 1.21
HTT-213ENST00000513806 DCAF8L2P0C7V8 631 aa22.6■■□□□ 1.21
HTT-213ENST00000513806 NACADO15069 1562 aa22.39■■□□□ 1.18
HTT-213ENST00000513806 RB1CC1Q8TDY2 1594 aa22.38■■□□□ 1.17
HTT-213ENST00000513806 DCAF1Q9Y4B6 1507 aa22.31■■□□□ 1.16
HTT-213ENST00000513806 MYO15BQ96JP2 1530 aa22.25■■□□□ 1.15
HTT-213ENST00000513806 UNC13AQ9UPW8 1703 aa22.08■■□□□ 1.12
HTT-213ENST00000513806 SCRIBQ14160 1630 aa21.99■■□□□ 1.11
HTT-213ENST00000513806 PABPN1Q86U42 306 aaKnown RBP eCLIP21.79■■□□□ 1.08
HTT-213ENST00000513806 BICRAQ9NZM4 1560 aa21.78■■□□□ 1.08
HTT-213ENST00000513806 SHROOM4Q9ULL8 1493 aa21.74■■□□□ 1.07
HTT-213ENST00000513806 EIF4G1Q04637 1599 aaKnown RBP21.14■□□□□ 0.98
HTT-213ENST00000513806 CECR2Q9BXF3 1484 aa21.14■□□□□ 0.98
HTT-213ENST00000513806 DNAJC5BQ9UF47 199 aa21.09■□□□□ 0.97
HTT-213ENST00000513806 CC2D2AQ9P2K1 1620 aa21.03■□□□□ 0.96
HTT-213ENST00000513806 SMARCA4P51532 1647 aa21■□□□□ 0.95
HTT-213ENST00000513806 MROH2BQ7Z745 1585 aa20.94■□□□□ 0.94
HTT-213ENST00000513806 BAZ1AQ9NRL2 1556 aaPredicted RBP20.93■□□□□ 0.94
HTT-213ENST00000513806 WIZO95785 1651 aa20.8■□□□□ 0.92
HTT-213ENST00000513806 ATAD2BQ9ULI0 1458 aa20.75■□□□□ 0.91
HTT-213ENST00000513806 RSF1Q96T23 1441 aaPredicted RBP20.75■□□□□ 0.91
HTT-213ENST00000513806 SMARCA2P51531 1590 aa20.71■□□□□ 0.91
HTT-213ENST00000513806 PEG3Q9GZU2 1588 aa20.69■□□□□ 0.9
HTT-213ENST00000513806 NCAPD3P42695 1498 aa20.64■□□□□ 0.89
HTT-213ENST00000513806 BAZ1BQ9UIG0 1483 aaKnown RBP20.61■□□□□ 0.89
HTT-213ENST00000513806 HMGXB3Q12766 1538 aa20.58■□□□□ 0.89
HTT-213ENST00000513806 SUPT5HO00267 1087 aaKnown RBP20.53■□□□□ 0.88
HTT-213ENST00000513806 TOP2AP11388 1531 aaKnown RBP20.47■□□□□ 0.87
HTT-213ENST00000513806 CCDC88BA6NC98 1476 aa20.25■□□□□ 0.83
HTT-213ENST00000513806 NESP48681 1621 aa20.23■□□□□ 0.83
HTT-213ENST00000513806 LAMC3Q9Y6N6 1575 aa20.08■□□□□ 0.81
HTT-213ENST00000513806 CADPSQ9ULU8 1353 aa20.08■□□□□ 0.8
HTT-213ENST00000513806 KIF21AQ7Z4S6 1674 aa20.03■□□□□ 0.8
HTT-213ENST00000513806 CFTRP13569 1480 aa20.03■□□□□ 0.8
HTT-213ENST00000513806 PRDM2Q13029 1718 aa20.02■□□□□ 0.8
HTT-213ENST00000513806 ERCC6Q03468 1493 aa19.94■□□□□ 0.78
HTT-213ENST00000513806 PDS5BQ9NTI5 1447 aa19.9■□□□□ 0.78
HTT-213ENST00000513806 FANCD2Q9BXW9 1451 aa19.9■□□□□ 0.78
HTT-213ENST00000513806 CEP164Q9UPV0 1460 aa19.83■□□□□ 0.76
HTT-213ENST00000513806 THOC2Q8NI27 1593 aaKnown RBP19.82■□□□□ 0.76
HTT-213ENST00000513806 MRC2Q9UBG0 1479 aa19.73■□□□□ 0.75
HTT-213ENST00000513806 URB2Q14146 1524 aaKnown RBP19.72■□□□□ 0.75
HTT-213ENST00000513806 ABCC8Q09428 1581 aa19.7■□□□□ 0.74
HTT-213ENST00000513806 WDR62O43379 1518 aa19.67■□□□□ 0.74
HTT-213ENST00000513806 CUX1P39880 1505 aa19.62■□□□□ 0.73
HTT-213ENST00000513806 TOPBP1Q92547 1522 aa19.62■□□□□ 0.73
HTT-213ENST00000513806 DNMBPQ6XZF7 1577 aa19.61■□□□□ 0.73
HTT-213ENST00000513806 SYNJ1O43426 1573 aa19.57■□□□□ 0.72
HTT-213ENST00000513806 CUX2O14529 1486 aa19.55■□□□□ 0.72
HTT-213ENST00000513806 WRNQ14191 1432 aaPredicted RBP eCLIP19.53■□□□□ 0.72
HTT-213ENST00000513806 BIVM-ERCC5R4GMW8 1640 aa19.51■□□□□ 0.71
HTT-213ENST00000513806 FGD5Q6ZNL6 1462 aa19.49■□□□□ 0.71
HTT-213ENST00000513806 TOP2BQ02880 1626 aa19.49■□□□□ 0.71
HTT-213ENST00000513806 POLA1P09884 1462 aaPredicted RBP19.48■□□□□ 0.71
HTT-213ENST00000513806 RAD54L2Q9Y4B4 1467 aa19.45■□□□□ 0.7
HTT-213ENST00000513806 TARBP1Q13395 1621 aaKnown RBP19.42■□□□□ 0.7
HTT-213ENST00000513806 ZNF608Q9ULD9 1512 aaPredicted RBP19.37■□□□□ 0.69
HTT-213ENST00000513806 SOGA1O94964 1423 aa19.37■□□□□ 0.69
HTT-213ENST00000513806 WDR97A6NE52 1622 aa19.36■□□□□ 0.69
HTT-213ENST00000513806 IFT140Q96RY7 1462 aa19.36■□□□□ 0.69
HTT-213ENST00000513806 EIF4G3O43432 1585 aaKnown RBP19.3■□□□□ 0.68
HTT-213ENST00000513806 AQRO60306 1485 aaKnown RBP eCLIP19.28■□□□□ 0.688e-7■■■■■ 28.7
HTT-213ENST00000513806 CHIC1Q5VXU3 224 aa19.28■□□□□ 0.68
HTT-213ENST00000513806 TRIM41Q8WV44 630 aa19.28■□□□□ 0.68
HTT-213ENST00000513806 TDRD9Q8NDG6 1382 aaKnown RBP19.28■□□□□ 0.68
HTT-213ENST00000513806 ABCA10Q8WWZ4 1543 aa19.25■□□□□ 0.67
HTT-213ENST00000513806 PBRM1Q86U86 1689 aa19.22■□□□□ 0.67
HTT-213ENST00000513806 ABCA5Q8WWZ7 1642 aa19.22■□□□□ 0.67
HTT-213ENST00000513806 GAPVD1Q14C86 1478 aa19.16■□□□□ 0.66
HTT-213ENST00000513806 RUSC2Q8N2Y8 1516 aa19.16■□□□□ 0.66
HTT-213ENST00000513806 GRIN2BQ13224 1484 aa19.09■□□□□ 0.65
HTT-213ENST00000513806 SNAPC4Q5SXM2 1469 aa19.09■□□□□ 0.65
HTT-213ENST00000513806 CHD1O14646 1710 aa19.07■□□□□ 0.64
HTT-213ENST00000513806 KIF27Q86VH2 1401 aa19.07■□□□□ 0.64
HTT-213ENST00000513806 FAM9AQ8IZU1 332 aaPredicted RBP19.02■□□□□ 0.64
HTT-213ENST00000513806 ADAMTS12P58397 1594 aa19.02■□□□□ 0.63
HTT-213ENST00000513806 ERICH3Q5RHP9 1530 aa19.01■□□□□ 0.63
HTT-213ENST00000513806 FBLN2P98095 1184 aa18.99■□□□□ 0.63
HTT-213ENST00000513806 MAGI1Q96QZ7 1491 aaPredicted RBP18.98■□□□□ 0.63
HTT-213ENST00000513806 IGF1RP08069 1367 aa18.98■□□□□ 0.63
HTT-213ENST00000513806 CUL7Q14999 1698 aa18.94■□□□□ 0.62
HTT-213ENST00000513806 SYNJ2O15056 1496 aa18.93■□□□□ 0.62
HTT-213ENST00000513806 CHMP7Q8WUX9 453 aaPredicted RBP18.91■□□□□ 0.62
HTT-213ENST00000513806 FHAD1B1AJZ9 1412 aa18.91■□□□□ 0.62
HTT-213ENST00000513806 CARMIL1Q5VZK9 1371 aa18.88■□□□□ 0.61
HTT-213ENST00000513806 GRIN2AQ12879 1464 aa18.88■□□□□ 0.61
HTT-213ENST00000513806 CSRNP3Q8WYN3 585 aa18.85■□□□□ 0.61
HTT-213ENST00000513806 EHMT2Q96KQ7 1210 aa18.85■□□□□ 0.61
HTT-213ENST00000513806 CEP170Q5SW79 1584 aa18.84■□□□□ 0.61
HTT-213ENST00000513806 EEA1Q15075 1411 aa18.83■□□□□ 0.61
HTT-213ENST00000513806 PRXQ9BXM0 1461 aa18.8■□□□□ 0.6
HTT-213ENST00000513806 RAPGEF2Q9Y4G8 1499 aa18.8■□□□□ 0.6
HTT-213ENST00000513806 OSCARQ8IYS5 282 aa18.8■□□□□ 0.6
HTT-213ENST00000513806 NUP160Q12769 1436 aa18.75■□□□□ 0.59
HTT-213ENST00000513806 CLASP1Q7Z460 1538 aa18.75■□□□□ 0.59
HTT-213ENST00000513806 KIF21BO75037 1637 aa18.74■□□□□ 0.59
HTT-213ENST00000513806 CTTNBP2Q8WZ74 1663 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms