RNA–Protein interactions for RNA: ENST00000513043.5

DDR1-270, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

TSL 4

Gene DDR1, Length 604 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-270ENST00000513043 NISCHQ9Y2I1 1504 aa41.79■■■■■ 4.28
DDR1-270ENST00000513043 CCDC180Q9P1Z9 1646 aa36.99■■■■□ 3.51
DDR1-270ENST00000513043 ABCC9O60706 1549 aa36.14■■■■□ 3.38
DDR1-270ENST00000513043 DCAF8L2P0C7V8 631 aa34.99■■■■□ 3.19
DDR1-270ENST00000513043 ZCCHC6Q5VYS8 1495 aaKnown RBP34.86■■■■□ 3.17
DDR1-270ENST00000513043 NACADO15069 1562 aa34.75■■■■□ 3.15
DDR1-270ENST00000513043 RB1CC1Q8TDY2 1594 aa34.75■■■■□ 3.15
DDR1-270ENST00000513043 MYO15BQ96JP2 1530 aa34.55■■■■□ 3.12
DDR1-270ENST00000513043 DCAF1Q9Y4B6 1507 aa34.51■■■■□ 3.12
DDR1-270ENST00000513043 UNC13AQ9UPW8 1703 aa33.98■■■■□ 3.03
DDR1-270ENST00000513043 SCRIBQ14160 1630 aa33.91■■■■□ 3.02
DDR1-270ENST00000513043 PABPN1Q86U42 306 aaKnown RBP eCLIP33.85■■■■□ 3.01
DDR1-270ENST00000513043 BICRAQ9NZM4 1560 aa33.72■■■□□ 2.99
DDR1-270ENST00000513043 DNAJC5BQ9UF47 199 aa33.49■■■□□ 2.95
DDR1-270ENST00000513043 SHROOM4Q9ULL8 1493 aa33.32■■■□□ 2.92
DDR1-270ENST00000513043 EIF4G1Q04637 1599 aaKnown RBP32.82■■■□□ 2.84
DDR1-270ENST00000513043 CC2D2AQ9P2K1 1620 aa32.64■■■□□ 2.82
DDR1-270ENST00000513043 CECR2Q9BXF3 1484 aa32.6■■■□□ 2.81
DDR1-270ENST00000513043 SMARCA4P51532 1647 aa32.39■■■□□ 2.78
DDR1-270ENST00000513043 BAZ1AQ9NRL2 1556 aaPredicted RBP32.36■■■□□ 2.77
DDR1-270ENST00000513043 MROH2BQ7Z745 1585 aa32.26■■■□□ 2.75
DDR1-270ENST00000513043 ATAD2BQ9ULI0 1458 aa32.16■■■□□ 2.74
DDR1-270ENST00000513043 SMARCA2P51531 1590 aa32.11■■■□□ 2.73
DDR1-270ENST00000513043 NCAPD3P42695 1498 aa32.07■■■□□ 2.72
DDR1-270ENST00000513043 PEG3Q9GZU2 1588 aa32■■■□□ 2.71
DDR1-270ENST00000513043 RSF1Q96T23 1441 aaPredicted RBP31.96■■■□□ 2.71
DDR1-270ENST00000513043 WIZO95785 1651 aa31.93■■■□□ 2.7
DDR1-270ENST00000513043 BAZ1BQ9UIG0 1483 aaKnown RBP31.93■■■□□ 2.7
DDR1-270ENST00000513043 HMGXB3Q12766 1538 aa31.93■■■□□ 2.7
DDR1-270ENST00000513043 TOP2AP11388 1531 aaKnown RBP31.56■■■□□ 2.64
DDR1-270ENST00000513043 SUPT5HO00267 1087 aaKnown RBP31.44■■■□□ 2.62
DDR1-270ENST00000513043 NESP48681 1621 aa31.34■■■□□ 2.61
DDR1-270ENST00000513043 CCDC88BA6NC98 1476 aa31.22■■■□□ 2.59
DDR1-270ENST00000513043 LAMC3Q9Y6N6 1575 aa31.19■■■□□ 2.58
DDR1-270ENST00000513043 CADPSQ9ULU8 1353 aa31.18■■■□□ 2.58
DDR1-270ENST00000513043 ERCC6Q03468 1493 aa31.12■■■□□ 2.57
DDR1-270ENST00000513043 CFTRP13569 1480 aa31.03■■■□□ 2.56
DDR1-270ENST00000513043 PDS5BQ9NTI5 1447 aa31■■■□□ 2.55
DDR1-270ENST00000513043 KIF21AQ7Z4S6 1674 aa30.93■■■□□ 2.54
DDR1-270ENST00000513043 FANCD2Q9BXW9 1451 aa30.85■■■□□ 2.53
DDR1-270ENST00000513043 CUX2O14529 1486 aa30.82■■■□□ 2.52
DDR1-270ENST00000513043 CEP164Q9UPV0 1460 aa30.78■■■□□ 2.52
DDR1-270ENST00000513043 PRDM2Q13029 1718 aa30.77■■■□□ 2.52
DDR1-270ENST00000513043 THOC2Q8NI27 1593 aaKnown RBP30.75■■■□□ 2.51
DDR1-270ENST00000513043 MRC2Q9UBG0 1479 aa30.69■■■□□ 2.5
DDR1-270ENST00000513043 WDR62O43379 1518 aa30.55■■■□□ 2.48
DDR1-270ENST00000513043 URB2Q14146 1524 aaKnown RBP30.53■■■□□ 2.48
DDR1-270ENST00000513043 DNAJC5Q9H3Z4 198 aa30.5■■■□□ 2.47
DDR1-270ENST00000513043 TOPBP1Q92547 1522 aa30.37■■■□□ 2.45
DDR1-270ENST00000513043 DNMBPQ6XZF7 1577 aa30.34■■■□□ 2.45
DDR1-270ENST00000513043 ABCC8Q09428 1581 aa30.32■■■□□ 2.44
DDR1-270ENST00000513043 CUX1P39880 1505 aa30.25■■■□□ 2.43
DDR1-270ENST00000513043 WRNQ14191 1432 aaPredicted RBP eCLIP30.13■■■□□ 2.41
DDR1-270ENST00000513043 POLA1P09884 1462 aaPredicted RBP30.13■■■□□ 2.41
DDR1-270ENST00000513043 FGD5Q6ZNL6 1462 aa30.12■■■□□ 2.41
DDR1-270ENST00000513043 IFT140Q96RY7 1462 aa30.1■■■□□ 2.41
DDR1-270ENST00000513043 SYNJ1O43426 1573 aa30.06■■■□□ 2.4
DDR1-270ENST00000513043 RAD54L2Q9Y4B4 1467 aa30.06■■■□□ 2.4
DDR1-270ENST00000513043 SOGA1O94964 1423 aa30.03■■■□□ 2.4
DDR1-270ENST00000513043 ZNF608Q9ULD9 1512 aaPredicted RBP30.01■■■□□ 2.4
DDR1-270ENST00000513043 TOP2BQ02880 1626 aa30■■■□□ 2.39
DDR1-270ENST00000513043 TARBP1Q13395 1621 aaKnown RBP30■■■□□ 2.39
DDR1-270ENST00000513043 BIVM-ERCC5R4GMW8 1640 aa29.99■■■□□ 2.39
DDR1-270ENST00000513043 TDRD9Q8NDG6 1382 aaKnown RBP29.88■■■□□ 2.37
DDR1-270ENST00000513043 AQRO60306 1485 aaKnown RBP eCLIP29.87■■■□□ 2.372e-7■■■■■ 31.6
DDR1-270ENST00000513043 EIF4G3O43432 1585 aaKnown RBP29.86■■■□□ 2.37
DDR1-270ENST00000513043 WDR97A6NE52 1622 aa29.8■■■□□ 2.36
DDR1-270ENST00000513043 ABCA10Q8WWZ4 1543 aa29.79■■■□□ 2.36
DDR1-270ENST00000513043 GAPVD1Q14C86 1478 aa29.68■■■□□ 2.34
DDR1-270ENST00000513043 ABCA5Q8WWZ7 1642 aa29.64■■■□□ 2.34
DDR1-270ENST00000513043 GRIN2BQ13224 1484 aa29.62■■■□□ 2.33
DDR1-270ENST00000513043 TRIM41Q8WV44 630 aa29.62■■■□□ 2.33
DDR1-270ENST00000513043 SNAPC4Q5SXM2 1469 aa29.6■■■□□ 2.33
DDR1-270ENST00000513043 PBRM1Q86U86 1689 aa29.59■■■□□ 2.33
DDR1-270ENST00000513043 FBLN2P98095 1184 aa29.53■■■□□ 2.32
DDR1-270ENST00000513043 MAGI1Q96QZ7 1491 aaPredicted RBP29.5■■■□□ 2.31
DDR1-270ENST00000513043 KIF27Q86VH2 1401 aa29.47■■■□□ 2.31
DDR1-270ENST00000513043 OSCARQ8IYS5 282 aa29.47■■■□□ 2.31
DDR1-270ENST00000513043 CHD1O14646 1710 aa29.45■■■□□ 2.31
DDR1-270ENST00000513043 CHMP7Q8WUX9 453 aaPredicted RBP29.43■■■□□ 2.3
DDR1-270ENST00000513043 ERICH3Q5RHP9 1530 aa29.42■■■□□ 2.3
DDR1-270ENST00000513043 CHIC1Q5VXU3 224 aa29.41■■■□□ 2.3
DDR1-270ENST00000513043 SYNJ2O15056 1496 aa29.41■■■□□ 2.3
DDR1-270ENST00000513043 ADAMTS12P58397 1594 aa29.37■■■□□ 2.29
DDR1-270ENST00000513043 RUSC2Q8N2Y8 1516 aa29.34■■■□□ 2.29
DDR1-270ENST00000513043 IGF1RP08069 1367 aa29.33■■■□□ 2.29
DDR1-270ENST00000513043 FHAD1B1AJZ9 1412 aa29.32■■■□□ 2.28
DDR1-270ENST00000513043 GRIN2AQ12879 1464 aa29.25■■■□□ 2.27
DDR1-270ENST00000513043 CUL7Q14999 1698 aa29.2■■■□□ 2.26
DDR1-270ENST00000513043 CARMIL1Q5VZK9 1371 aa29.17■■■□□ 2.26
DDR1-270ENST00000513043 CLASP1Q7Z460 1538 aa29.11■■■□□ 2.25
DDR1-270ENST00000513043 CEP170Q5SW79 1584 aa29.11■■■□□ 2.25
DDR1-270ENST00000513043 FAM9AQ8IZU1 332 aaPredicted RBP29.1■■■□□ 2.25
DDR1-270ENST00000513043 NUP160Q12769 1436 aa29.1■■■□□ 2.25
DDR1-270ENST00000513043 RIMBP3CA6NJZ7 1639 aa29.08■■■□□ 2.25
DDR1-270ENST00000513043 RIMBP3BA6NNM3 1639 aa29.08■■■□□ 2.25
DDR1-270ENST00000513043 RIMBP3Q9UFD9 1639 aa29.08■■■□□ 2.25
DDR1-270ENST00000513043 CSRNP3Q8WYN3 585 aa29.01■■■□□ 2.23
DDR1-270ENST00000513043 RAPGEF2Q9Y4G8 1499 aa29.01■■■□□ 2.23
DDR1-270ENST00000513043 EEA1Q15075 1411 aa29.01■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms