RNA–Protein interactions for RNA: ENST00000512234.1

SQSTM1-214, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 1,722 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-214ENST00000512234 NISCHQ9Y2I1 1504 aa36.89■■■■□ 3.5
SQSTM1-214ENST00000512234 CCDC180Q9P1Z9 1646 aa32.54■■■□□ 2.8
SQSTM1-214ENST00000512234 ABCC9O60706 1549 aa31.98■■■□□ 2.71
SQSTM1-214ENST00000512234 DCAF8L2P0C7V8 631 aa31.04■■■□□ 2.56
SQSTM1-214ENST00000512234 ZCCHC6Q5VYS8 1495 aaKnown RBP30.74■■■□□ 2.51
SQSTM1-214ENST00000512234 RB1CC1Q8TDY2 1594 aa30.62■■■□□ 2.49
SQSTM1-214ENST00000512234 NACADO15069 1562 aa30.59■■■□□ 2.49
SQSTM1-214ENST00000512234 MYO15BQ96JP2 1530 aa30.37■■■□□ 2.45
SQSTM1-214ENST00000512234 DCAF1Q9Y4B6 1507 aa30.36■■■□□ 2.45
SQSTM1-214ENST00000512234 PABPN1Q86U42 306 aaKnown RBP eCLIP30.03■■■□□ 2.4
SQSTM1-214ENST00000512234 UNC13AQ9UPW8 1703 aa30.01■■■□□ 2.39
SQSTM1-214ENST00000512234 SCRIBQ14160 1630 aa29.97■■■□□ 2.39
SQSTM1-214ENST00000512234 BICRAQ9NZM4 1560 aa29.8■■■□□ 2.36
SQSTM1-214ENST00000512234 SHROOM4Q9ULL8 1493 aa29.56■■■□□ 2.32
SQSTM1-214ENST00000512234 DNAJC5BQ9UF47 199 aa29.31■■■□□ 2.28
SQSTM1-214ENST00000512234 EIF4G1Q04637 1599 aaKnown RBP28.97■■■□□ 2.23
SQSTM1-214ENST00000512234 CECR2Q9BXF3 1484 aa28.87■■■□□ 2.21
SQSTM1-214ENST00000512234 CC2D2AQ9P2K1 1620 aa28.83■■■□□ 2.21
SQSTM1-214ENST00000512234 SMARCA4P51532 1647 aa28.57■■■□□ 2.16
SQSTM1-214ENST00000512234 MROH2BQ7Z745 1585 aa28.53■■■□□ 2.16
SQSTM1-214ENST00000512234 BAZ1AQ9NRL2 1556 aaPredicted RBP28.51■■■□□ 2.15
SQSTM1-214ENST00000512234 ATAD2BQ9ULI0 1458 aa28.4■■■□□ 2.14
SQSTM1-214ENST00000512234 NCAPD3P42695 1498 aa28.29■■■□□ 2.12
SQSTM1-214ENST00000512234 SMARCA2P51531 1590 aa28.27■■■□□ 2.12
SQSTM1-214ENST00000512234 RSF1Q96T23 1441 aaPredicted RBP28.25■■■□□ 2.11
SQSTM1-214ENST00000512234 WIZO95785 1651 aa28.23■■■□□ 2.11
SQSTM1-214ENST00000512234 PEG3Q9GZU2 1588 aa28.19■■■□□ 2.1
SQSTM1-214ENST00000512234 BAZ1BQ9UIG0 1483 aaKnown RBP28.16■■■□□ 2.1
SQSTM1-214ENST00000512234 HMGXB3Q12766 1538 aa28.11■■■□□ 2.09
SQSTM1-214ENST00000512234 SUPT5HO00267 1087 aaKnown RBP27.88■■■□□ 2.05
SQSTM1-214ENST00000512234 TOP2AP11388 1531 aaKnown RBP27.82■■■□□ 2.04
SQSTM1-214ENST00000512234 NESP48681 1621 aa27.76■■■□□ 2.03
SQSTM1-214ENST00000512234 CCDC88BA6NC98 1476 aa27.6■■■□□ 2.01
SQSTM1-214ENST00000512234 CADPSQ9ULU8 1353 aa27.53■■■□□ 2
SQSTM1-214ENST00000512234 LAMC3Q9Y6N6 1575 aa27.46■■□□□ 1.99
SQSTM1-214ENST00000512234 ERCC6Q03468 1493 aa27.46■■□□□ 1.99
SQSTM1-214ENST00000512234 CFTRP13569 1480 aa27.38■■□□□ 1.97
SQSTM1-214ENST00000512234 PDS5BQ9NTI5 1447 aa27.32■■□□□ 1.96
SQSTM1-214ENST00000512234 KIF21AQ7Z4S6 1674 aa27.32■■□□□ 1.96
SQSTM1-214ENST00000512234 FANCD2Q9BXW9 1451 aa27.24■■□□□ 1.95
SQSTM1-214ENST00000512234 CEP164Q9UPV0 1460 aa27.14■■□□□ 1.94
SQSTM1-214ENST00000512234 THOC2Q8NI27 1593 aaKnown RBP27.13■■□□□ 1.93
SQSTM1-214ENST00000512234 PRDM2Q13029 1718 aa27.06■■□□□ 1.92
SQSTM1-214ENST00000512234 MRC2Q9UBG0 1479 aa27.06■■□□□ 1.92
SQSTM1-214ENST00000512234 URB2Q14146 1524 aaKnown RBP26.99■■□□□ 1.91
SQSTM1-214ENST00000512234 CUX2O14529 1486 aa26.96■■□□□ 1.91
SQSTM1-214ENST00000512234 WDR62O43379 1518 aa26.94■■□□□ 1.9
SQSTM1-214ENST00000512234 TOPBP1Q92547 1522 aa26.82■■□□□ 1.88
SQSTM1-214ENST00000512234 DNMBPQ6XZF7 1577 aa26.74■■□□□ 1.87
SQSTM1-214ENST00000512234 ABCC8Q09428 1581 aa26.73■■□□□ 1.87
SQSTM1-214ENST00000512234 CUX1P39880 1505 aa26.73■■□□□ 1.87
SQSTM1-214ENST00000512234 POLA1P09884 1462 aaPredicted RBP26.62■■□□□ 1.85
SQSTM1-214ENST00000512234 RAD54L2Q9Y4B4 1467 aa26.6■■□□□ 1.85
SQSTM1-214ENST00000512234 FGD5Q6ZNL6 1462 aa26.6■■□□□ 1.85
SQSTM1-214ENST00000512234 WRNQ14191 1432 aaPredicted RBP eCLIP26.59■■□□□ 1.85
SQSTM1-214ENST00000512234 ZNF608Q9ULD9 1512 aaPredicted RBP26.57■■□□□ 1.84
SQSTM1-214ENST00000512234 SYNJ1O43426 1573 aa26.57■■□□□ 1.84
SQSTM1-214ENST00000512234 IFT140Q96RY7 1462 aa26.53■■□□□ 1.84
SQSTM1-214ENST00000512234 SOGA1O94964 1423 aa26.53■■□□□ 1.84
SQSTM1-214ENST00000512234 TARBP1Q13395 1621 aaKnown RBP26.49■■□□□ 1.83
SQSTM1-214ENST00000512234 AQRO60306 1485 aaKnown RBP eCLIP26.46■■□□□ 1.83
SQSTM1-214ENST00000512234 TOP2BQ02880 1626 aa26.46■■□□□ 1.83
SQSTM1-214ENST00000512234 TDRD9Q8NDG6 1382 aaKnown RBP26.45■■□□□ 1.82
SQSTM1-214ENST00000512234 BIVM-ERCC5R4GMW8 1640 aa26.43■■□□□ 1.82
SQSTM1-214ENST00000512234 EIF4G3O43432 1585 aaKnown RBP26.36■■□□□ 1.81
SQSTM1-214ENST00000512234 WDR97A6NE52 1622 aa26.27■■□□□ 1.8
SQSTM1-214ENST00000512234 ABCA10Q8WWZ4 1543 aa26.26■■□□□ 1.79
SQSTM1-214ENST00000512234 GAPVD1Q14C86 1478 aa26.2■■□□□ 1.78
SQSTM1-214ENST00000512234 TRIM41Q8WV44 630 aa26.19■■□□□ 1.78
SQSTM1-214ENST00000512234 FBLN2P98095 1184 aa26.16■■□□□ 1.78
SQSTM1-214ENST00000512234 SNAPC4Q5SXM2 1469 aa26.14■■□□□ 1.78
SQSTM1-214ENST00000512234 ABCA5Q8WWZ7 1642 aa26.14■■□□□ 1.78
SQSTM1-214ENST00000512234 GRIN2BQ13224 1484 aa26.13■■□□□ 1.77
SQSTM1-214ENST00000512234 PBRM1Q86U86 1689 aa26.08■■□□□ 1.77
SQSTM1-214ENST00000512234 DNAJC5Q9H3Z4 198 aa26.07■■□□□ 1.76
SQSTM1-214ENST00000512234 CHIC1Q5VXU3 224 aa26.05■■□□□ 1.76
SQSTM1-214ENST00000512234 OSCARQ8IYS5 282 aa26.02■■□□□ 1.76
SQSTM1-214ENST00000512234 RUSC2Q8N2Y8 1516 aa26.02■■□□□ 1.76
SQSTM1-214ENST00000512234 CHMP7Q8WUX9 453 aaPredicted RBP26.01■■□□□ 1.75
SQSTM1-214ENST00000512234 CHD1O14646 1710 aa26■■□□□ 1.75
SQSTM1-214ENST00000512234 MAGI1Q96QZ7 1491 aaPredicted RBP25.98■■□□□ 1.75
SQSTM1-214ENST00000512234 KIF27Q86VH2 1401 aa25.98■■□□□ 1.75
SQSTM1-214ENST00000512234 IGF1RP08069 1367 aa25.93■■□□□ 1.74
SQSTM1-214ENST00000512234 SYNJ2O15056 1496 aa25.93■■□□□ 1.74
SQSTM1-214ENST00000512234 ERICH3Q5RHP9 1530 aa25.91■■□□□ 1.74
SQSTM1-214ENST00000512234 ADAMTS12P58397 1594 aa25.89■■□□□ 1.74
SQSTM1-214ENST00000512234 FHAD1B1AJZ9 1412 aa25.86■■□□□ 1.73
SQSTM1-214ENST00000512234 FAM9AQ8IZU1 332 aaPredicted RBP25.83■■□□□ 1.73
SQSTM1-214ENST00000512234 GRIN2AQ12879 1464 aa25.81■■□□□ 1.72
SQSTM1-214ENST00000512234 CARMIL1Q5VZK9 1371 aa25.77■■□□□ 1.72
SQSTM1-214ENST00000512234 CEP170Q5SW79 1584 aa25.72■■□□□ 1.71
SQSTM1-214ENST00000512234 CUL7Q14999 1698 aa25.69■■□□□ 1.7
SQSTM1-214ENST00000512234 CLASP1Q7Z460 1538 aa25.68■■□□□ 1.7
SQSTM1-214ENST00000512234 NUP160Q12769 1436 aa25.67■■□□□ 1.7
SQSTM1-214ENST00000512234 CSRNP3Q8WYN3 585 aa25.64■■□□□ 1.7
SQSTM1-214ENST00000512234 EHMT2Q96KQ7 1210 aa25.63■■□□□ 1.69
SQSTM1-214ENST00000512234 RAPGEF2Q9Y4G8 1499 aa25.59■■□□□ 1.69
SQSTM1-214ENST00000512234 ARHGEF11O15085 1522 aa25.58■■□□□ 1.69
SQSTM1-214ENST00000512234 RIMBP3CA6NJZ7 1639 aa25.58■■□□□ 1.68
SQSTM1-214ENST00000512234 RIMBP3BA6NNM3 1639 aa25.58■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms