RNA–Protein interactions for RNA: ENST00000511125.1

SMAD1-209, Transcript of SMAD family member 1, humanhuman

TSL 2

Gene SMAD1, Length 3,293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD1-209ENST00000511125 NISCHQ9Y2I1 1504 aa18.32■□□□□ 0.52
SMAD1-209ENST00000511125 CCDC180Q9P1Z9 1646 aa15.83■□□□□ 0.12
SMAD1-209ENST00000511125 DCAF8L2P0C7V8 631 aa15.81■□□□□ 0.12
SMAD1-209ENST00000511125 ABCC9O60706 1549 aa15.66■□□□□ 0.1
SMAD1-209ENST00000511125 SHROOM4Q9ULL8 1493 aa15.3■□□□□ 0.04
SMAD1-209ENST00000511125 ZCCHC6Q5VYS8 1495 aaKnown RBP15.29■□□□□ 0.04
SMAD1-209ENST00000511125 DCAF1Q9Y4B6 1507 aa14.9□□□□□ -0.02
SMAD1-209ENST00000511125 NACADO15069 1562 aa14.9□□□□□ -0.02
SMAD1-209ENST00000511125 SCRIBQ14160 1630 aa14.9□□□□□ -0.02
SMAD1-209ENST00000511125 PABPN1Q86U42 306 aaKnown RBP eCLIP14.89□□□□□ -0.03
SMAD1-209ENST00000511125 RB1CC1Q8TDY2 1594 aa14.88□□□□□ -0.03
SMAD1-209ENST00000511125 MYO15BQ96JP2 1530 aa14.75□□□□□ -0.05
SMAD1-209ENST00000511125 SUPT5HO00267 1087 aaKnown RBP14.64□□□□□ -0.07
SMAD1-209ENST00000511125 UNC13AQ9UPW8 1703 aa14.57□□□□□ -0.08
SMAD1-209ENST00000511125 BICRAQ9NZM4 1560 aa14.47□□□□□ -0.09
SMAD1-209ENST00000511125 CECR2Q9BXF3 1484 aa14.43□□□□□ -0.1
SMAD1-209ENST00000511125 MROH2BQ7Z745 1585 aa14.25□□□□□ -0.13
SMAD1-209ENST00000511125 RSF1Q96T23 1441 aaPredicted RBP14.22□□□□□ -0.13
SMAD1-209ENST00000511125 WIZO95785 1651 aa14.12□□□□□ -0.15
SMAD1-209ENST00000511125 BAZ1AQ9NRL2 1556 aaPredicted RBP14.12□□□□□ -0.15
SMAD1-209ENST00000511125 DNAJC5BQ9UF47 199 aa14.12□□□□□ -0.15
SMAD1-209ENST00000511125 SMARCA4P51532 1647 aa14.1□□□□□ -0.15
SMAD1-209ENST00000511125 EIF4G1Q04637 1599 aaKnown RBP14.09□□□□□ -0.15
SMAD1-209ENST00000511125 ATAD2BQ9ULI0 1458 aa13.99□□□□□ -0.17
SMAD1-209ENST00000511125 CC2D2AQ9P2K1 1620 aa13.97□□□□□ -0.17
SMAD1-209ENST00000511125 BAZ1BQ9UIG0 1483 aaKnown RBP13.94□□□□□ -0.18
SMAD1-209ENST00000511125 SMARCA2P51531 1590 aa13.87□□□□□ -0.19
SMAD1-209ENST00000511125 CCDC88BA6NC98 1476 aa13.82□□□□□ -0.2
SMAD1-209ENST00000511125 NCAPD3P42695 1498 aa13.82□□□□□ -0.2
SMAD1-209ENST00000511125 TOP2AP11388 1531 aaKnown RBP13.82□□□□□ -0.2
SMAD1-209ENST00000511125 PEG3Q9GZU2 1588 aa13.77□□□□□ -0.2
SMAD1-209ENST00000511125 HMGXB3Q12766 1538 aa13.7□□□□□ -0.22
SMAD1-209ENST00000511125 CHIC1Q5VXU3 224 aa13.68□□□□□ -0.22
SMAD1-209ENST00000511125 NESP48681 1621 aa13.66□□□□□ -0.22
SMAD1-209ENST00000511125 EHMT2Q96KQ7 1210 aa13.63□□□□□ -0.23
SMAD1-209ENST00000511125 TRIM41Q8WV44 630 aa13.62□□□□□ -0.23
SMAD1-209ENST00000511125 FAM9AQ8IZU1 332 aaPredicted RBP13.61□□□□□ -0.23
SMAD1-209ENST00000511125 CADPSQ9ULU8 1353 aa13.57□□□□□ -0.24
SMAD1-209ENST00000511125 ABCC8Q09428 1581 aa13.56□□□□□ -0.24
SMAD1-209ENST00000511125 CFTRP13569 1480 aa13.49□□□□□ -0.25
SMAD1-209ENST00000511125 FANCD2Q9BXW9 1451 aa13.43□□□□□ -0.26
SMAD1-209ENST00000511125 WRNQ14191 1432 aaPredicted RBP eCLIP13.41□□□□□ -0.26
SMAD1-209ENST00000511125 ERCC6Q03468 1493 aa13.41□□□□□ -0.26
SMAD1-209ENST00000511125 PDS5BQ9NTI5 1447 aa13.38□□□□□ -0.27
SMAD1-209ENST00000511125 LOC105371045A0A1W2PR82 267 aa13.37□□□□□ -0.27
SMAD1-209ENST00000511125 LAMC3Q9Y6N6 1575 aa13.34□□□□□ -0.27
SMAD1-209ENST00000511125 CEP164Q9UPV0 1460 aa13.34□□□□□ -0.27
SMAD1-209ENST00000511125 SYNJ1O43426 1573 aa13.33□□□□□ -0.28
SMAD1-209ENST00000511125 KIF21AQ7Z4S6 1674 aa13.31□□□□□ -0.28
SMAD1-209ENST00000511125 CUX1P39880 1505 aa13.3□□□□□ -0.28
SMAD1-209ENST00000511125 SOGA1O94964 1423 aa13.29□□□□□ -0.28
SMAD1-209ENST00000511125 RUSC2Q8N2Y8 1516 aa13.28□□□□□ -0.28
SMAD1-209ENST00000511125 URB2Q14146 1524 aaKnown RBP13.26□□□□□ -0.29
SMAD1-209ENST00000511125 RANGAP1P46060 587 aaPredicted RBP13.26□□□□□ -0.29
SMAD1-209ENST00000511125 RAD54L2Q9Y4B4 1467 aa13.26□□□□□ -0.29
SMAD1-209ENST00000511125 FGD5Q6ZNL6 1462 aa13.23□□□□□ -0.29
SMAD1-209ENST00000511125 TOPBP1Q92547 1522 aa13.22□□□□□ -0.29
SMAD1-209ENST00000511125 TDRD9Q8NDG6 1382 aaKnown RBP13.21□□□□□ -0.29
SMAD1-209ENST00000511125 PRDM2Q13029 1718 aa13.19□□□□□ -0.3
SMAD1-209ENST00000511125 MRC2Q9UBG0 1479 aa13.19□□□□□ -0.3
SMAD1-209ENST00000511125 TOP2BQ02880 1626 aa13.18□□□□□ -0.3
SMAD1-209ENST00000511125 POLA1P09884 1462 aaPredicted RBP13.17□□□□□ -0.3
SMAD1-209ENST00000511125 CSRNP3Q8WYN3 585 aa13.16□□□□□ -0.3
SMAD1-209ENST00000511125 CUX2O14529 1486 aa13.16□□□□□ -0.3
SMAD1-209ENST00000511125 UBTFP17480 764 aaKnown RBP13.15□□□□□ -0.3
SMAD1-209ENST00000511125 DNMBPQ6XZF7 1577 aa13.15□□□□□ -0.3
SMAD1-209ENST00000511125 FBLN2P98095 1184 aa13.13□□□□□ -0.31
SMAD1-209ENST00000511125 AQRO60306 1485 aaKnown RBP eCLIP13.12□□□□□ -0.31
SMAD1-209ENST00000511125 BIVM-ERCC5R4GMW8 1640 aa13.1□□□□□ -0.31
SMAD1-209ENST00000511125 ZNF608Q9ULD9 1512 aaPredicted RBP13.09□□□□□ -0.31
SMAD1-209ENST00000511125 KIF27Q86VH2 1401 aa13.07□□□□□ -0.32
SMAD1-209ENST00000511125 THOC2Q8NI27 1593 aaKnown RBP13.06□□□□□ -0.32
SMAD1-209ENST00000511125 WDR62O43379 1518 aa13.04□□□□□ -0.32
SMAD1-209ENST00000511125 IGF1RP08069 1367 aa13.02□□□□□ -0.33
SMAD1-209ENST00000511125 TTBK1Q5TCY1 1321 aaPredicted RBP13□□□□□ -0.33
SMAD1-209ENST00000511125 GAPVD1Q14C86 1478 aa12.99□□□□□ -0.33
SMAD1-209ENST00000511125 ABCA10Q8WWZ4 1543 aa12.98□□□□□ -0.33
SMAD1-209ENST00000511125 CARMIL1Q5VZK9 1371 aa12.97□□□□□ -0.33
SMAD1-209ENST00000511125 RAPGEF2Q9Y4G8 1499 aa12.97□□□□□ -0.33
SMAD1-209ENST00000511125 IFT140Q96RY7 1462 aa12.97□□□□□ -0.33
SMAD1-209ENST00000511125 P3H3Q8IVL6 736 aa12.96□□□□□ -0.33
SMAD1-209ENST00000511125 CHMP7Q8WUX9 453 aaPredicted RBP12.96□□□□□ -0.33
SMAD1-209ENST00000511125 TARBP1Q13395 1621 aaKnown RBP12.96□□□□□ -0.34
SMAD1-209ENST00000511125 PPARGC1BQ86YN6 1023 aaKnown RBP12.94□□□□□ -0.34
SMAD1-209ENST00000511125 EEA1Q15075 1411 aa12.93□□□□□ -0.34
SMAD1-209ENST00000511125 SNAPC4Q5SXM2 1469 aa12.89□□□□□ -0.35
SMAD1-209ENST00000511125 EIF4G3O43432 1585 aaKnown RBP12.88□□□□□ -0.35
SMAD1-209ENST00000511125 GOLGA3Q08378 1498 aa12.87□□□□□ -0.35
SMAD1-209ENST00000511125 GRIN2BQ13224 1484 aa12.87□□□□□ -0.35
SMAD1-209ENST00000511125 ATP1B4Q9UN42 357 aaPredicted RBP12.86□□□□□ -0.35
SMAD1-209ENST00000511125 PRXQ9BXM0 1461 aa12.86□□□□□ -0.35
SMAD1-209ENST00000511125 WDR97A6NE52 1622 aa12.85□□□□□ -0.35
SMAD1-209ENST00000511125 ABCA5Q8WWZ7 1642 aa12.85□□□□□ -0.35
SMAD1-209ENST00000511125 ARID3CA6NKF2 412 aa12.81□□□□□ -0.36
SMAD1-209ENST00000511125 PBRM1Q86U86 1689 aa12.8□□□□□ -0.36
SMAD1-209ENST00000511125 CEP162Q5TB80 1403 aa12.8□□□□□ -0.36
SMAD1-209ENST00000511125 FHAD1B1AJZ9 1412 aa12.79□□□□□ -0.36
SMAD1-209ENST00000511125 TNIKQ9UKE5 1360 aa12.79□□□□□ -0.36
SMAD1-209ENST00000511125 ERICH3Q5RHP9 1530 aa12.79□□□□□ -0.36
SMAD1-209ENST00000511125 KIF21BO75037 1637 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms