RNA–Protein interactions for RNA: ENST00000510541.5

CLDND1-221, Transcript of claudin domain containing 1, humanhuman

TSL 4

Gene CLDND1, Length 573 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-221ENST00000510541 NISCHQ9Y2I1 1504 aa42.06■■■■■ 4.32
CLDND1-221ENST00000510541 CCDC180Q9P1Z9 1646 aa37.45■■■■□ 3.59
CLDND1-221ENST00000510541 ABCC9O60706 1549 aa36.28■■■■□ 3.4
CLDND1-221ENST00000510541 MYO15BQ96JP2 1530 aa35.22■■■■□ 3.23
CLDND1-221ENST00000510541 NACADO15069 1562 aa35.21■■■■□ 3.23
CLDND1-221ENST00000510541 RB1CC1Q8TDY2 1594 aa35.16■■■■□ 3.22
CLDND1-221ENST00000510541 ZCCHC6Q5VYS8 1495 aaKnown RBP35.07■■■■□ 3.2
CLDND1-221ENST00000510541 DCAF1Q9Y4B6 1507 aa35.01■■■■□ 3.2
CLDND1-221ENST00000510541 DCAF8L2P0C7V8 631 aa34.73■■■■□ 3.15
CLDND1-221ENST00000510541 UNC13AQ9UPW8 1703 aa34.24■■■■□ 3.07
CLDND1-221ENST00000510541 BICRAQ9NZM4 1560 aa34.05■■■■□ 3.04
CLDND1-221ENST00000510541 SHROOM4Q9ULL8 1493 aa34■■■■□ 3.03
CLDND1-221ENST00000510541 SCRIBQ14160 1630 aa33.87■■■■□ 3.01
CLDND1-221ENST00000510541 PABPN1Q86U42 306 aaKnown RBP eCLIP33.84■■■■□ 3.01
CLDND1-221ENST00000510541 DNAJC5BQ9UF47 199 aa33.27■■■□□ 2.92
CLDND1-221ENST00000510541 EIF4G1Q04637 1599 aaKnown RBP33.13■■■□□ 2.89
CLDND1-221ENST00000510541 CC2D2AQ9P2K1 1620 aa32.93■■■□□ 2.86
CLDND1-221ENST00000510541 CECR2Q9BXF3 1484 aa32.7■■■□□ 2.83
CLDND1-221ENST00000510541 BAZ1AQ9NRL2 1556 aaPredicted RBP32.62■■■□□ 2.81
CLDND1-221ENST00000510541 SMARCA4P51532 1647 aa32.58■■■□□ 2.81
CLDND1-221ENST00000510541 NCAPD3P42695 1498 aa32.5■■■□□ 2.79
CLDND1-221ENST00000510541 SMARCA2P51531 1590 aa32.45■■■□□ 2.78
CLDND1-221ENST00000510541 PEG3Q9GZU2 1588 aa32.45■■■□□ 2.78
CLDND1-221ENST00000510541 ATAD2BQ9ULI0 1458 aa32.42■■■□□ 2.78
CLDND1-221ENST00000510541 HMGXB3Q12766 1538 aa32.33■■■□□ 2.77
CLDND1-221ENST00000510541 MROH2BQ7Z745 1585 aa32.31■■■□□ 2.76
CLDND1-221ENST00000510541 BAZ1BQ9UIG0 1483 aaKnown RBP32.1■■■□□ 2.73
CLDND1-221ENST00000510541 RSF1Q96T23 1441 aaPredicted RBP32.02■■■□□ 2.72
CLDND1-221ENST00000510541 WIZO95785 1651 aa31.9■■■□□ 2.7
CLDND1-221ENST00000510541 TOP2AP11388 1531 aaKnown RBP31.71■■■□□ 2.67
CLDND1-221ENST00000510541 LAMC3Q9Y6N6 1575 aa31.59■■■□□ 2.65
CLDND1-221ENST00000510541 CADPSQ9ULU8 1353 aa31.48■■■□□ 2.63
CLDND1-221ENST00000510541 NESP48681 1621 aa31.42■■■□□ 2.62
CLDND1-221ENST00000510541 PDS5BQ9NTI5 1447 aa31.36■■■□□ 2.61
CLDND1-221ENST00000510541 CFTRP13569 1480 aa31.33■■■□□ 2.61
CLDND1-221ENST00000510541 ERCC6Q03468 1493 aa31.31■■■□□ 2.6
CLDND1-221ENST00000510541 CCDC88BA6NC98 1476 aa31.28■■■□□ 2.6
CLDND1-221ENST00000510541 CUX2O14529 1486 aa31.19■■■□□ 2.58
CLDND1-221ENST00000510541 KIF21AQ7Z4S6 1674 aa31.08■■■□□ 2.57
CLDND1-221ENST00000510541 THOC2Q8NI27 1593 aaKnown RBP31.07■■■□□ 2.56
CLDND1-221ENST00000510541 PRDM2Q13029 1718 aa31.06■■■□□ 2.56
CLDND1-221ENST00000510541 FANCD2Q9BXW9 1451 aa31.04■■■□□ 2.56
CLDND1-221ENST00000510541 CEP164Q9UPV0 1460 aa31.01■■■□□ 2.55
CLDND1-221ENST00000510541 MRC2Q9UBG0 1479 aa30.97■■■□□ 2.55
CLDND1-221ENST00000510541 SUPT5HO00267 1087 aaKnown RBP30.95■■■□□ 2.55
CLDND1-221ENST00000510541 WDR62O43379 1518 aa30.92■■■□□ 2.54
CLDND1-221ENST00000510541 ABCC8Q09428 1581 aa30.74■■■□□ 2.51
CLDND1-221ENST00000510541 URB2Q14146 1524 aaKnown RBP30.71■■■□□ 2.51
CLDND1-221ENST00000510541 TOPBP1Q92547 1522 aa30.57■■■□□ 2.48
CLDND1-221ENST00000510541 DNMBPQ6XZF7 1577 aa30.56■■■□□ 2.48
CLDND1-221ENST00000510541 IFT140Q96RY7 1462 aa30.42■■■□□ 2.46
CLDND1-221ENST00000510541 CUX1P39880 1505 aa30.32■■■□□ 2.44
CLDND1-221ENST00000510541 POLA1P09884 1462 aaPredicted RBP30.3■■■□□ 2.44
CLDND1-221ENST00000510541 TARBP1Q13395 1621 aaKnown RBP30.25■■■□□ 2.43
CLDND1-221ENST00000510541 WDR97A6NE52 1622 aa30.22■■■□□ 2.43
CLDND1-221ENST00000510541 FGD5Q6ZNL6 1462 aa30.19■■■□□ 2.42
CLDND1-221ENST00000510541 WRNQ14191 1432 aaPredicted RBP eCLIP30.18■■■□□ 2.42
CLDND1-221ENST00000510541 SOGA1O94964 1423 aa30.17■■■□□ 2.42
CLDND1-221ENST00000510541 TOP2BQ02880 1626 aa30.15■■■□□ 2.42
CLDND1-221ENST00000510541 BIVM-ERCC5R4GMW8 1640 aa30.14■■■□□ 2.42
CLDND1-221ENST00000510541 ZNF608Q9ULD9 1512 aaPredicted RBP30.12■■■□□ 2.41
CLDND1-221ENST00000510541 DNAJC5Q9H3Z4 198 aa30.08■■■□□ 2.41
CLDND1-221ENST00000510541 RAD54L2Q9Y4B4 1467 aa30.06■■■□□ 2.4
CLDND1-221ENST00000510541 EIF4G3O43432 1585 aaKnown RBP30.05■■■□□ 2.4
CLDND1-221ENST00000510541 ABCA10Q8WWZ4 1543 aa30.04■■■□□ 2.4
CLDND1-221ENST00000510541 SYNJ1O43426 1573 aa30.02■■■□□ 2.4
CLDND1-221ENST00000510541 AQRO60306 1485 aaKnown RBP eCLIP29.96■■■□□ 2.391e-6■■■■□ 26.1
CLDND1-221ENST00000510541 TDRD9Q8NDG6 1382 aaKnown RBP29.9■■■□□ 2.38
CLDND1-221ENST00000510541 GRIN2BQ13224 1484 aa29.87■■■□□ 2.37
CLDND1-221ENST00000510541 ABCA5Q8WWZ7 1642 aa29.86■■■□□ 2.37
CLDND1-221ENST00000510541 GAPVD1Q14C86 1478 aa29.84■■■□□ 2.37
CLDND1-221ENST00000510541 MAGI1Q96QZ7 1491 aaPredicted RBP29.83■■■□□ 2.37
CLDND1-221ENST00000510541 OSCARQ8IYS5 282 aa29.8■■■□□ 2.36
CLDND1-221ENST00000510541 PBRM1Q86U86 1689 aa29.71■■■□□ 2.35
CLDND1-221ENST00000510541 SNAPC4Q5SXM2 1469 aa29.7■■■□□ 2.35
CLDND1-221ENST00000510541 ERICH3Q5RHP9 1530 aa29.7■■■□□ 2.34
CLDND1-221ENST00000510541 SYNJ2O15056 1496 aa29.68■■■□□ 2.34
CLDND1-221ENST00000510541 CHD1O14646 1710 aa29.6■■■□□ 2.33
CLDND1-221ENST00000510541 KIF27Q86VH2 1401 aa29.58■■■□□ 2.33
CLDND1-221ENST00000510541 FHAD1B1AJZ9 1412 aa29.55■■■□□ 2.32
CLDND1-221ENST00000510541 CHMP7Q8WUX9 453 aaPredicted RBP29.54■■■□□ 2.32
CLDND1-221ENST00000510541 ADAMTS12P58397 1594 aa29.53■■■□□ 2.32
CLDND1-221ENST00000510541 IGF1RP08069 1367 aa29.46■■■□□ 2.31
CLDND1-221ENST00000510541 GRIN2AQ12879 1464 aa29.45■■■□□ 2.31
CLDND1-221ENST00000510541 FBLN2P98095 1184 aa29.44■■■□□ 2.3
CLDND1-221ENST00000510541 CLASP1Q7Z460 1538 aa29.44■■■□□ 2.3
CLDND1-221ENST00000510541 NUP160Q12769 1436 aa29.4■■■□□ 2.3
CLDND1-221ENST00000510541 CUL7Q14999 1698 aa29.4■■■□□ 2.3
CLDND1-221ENST00000510541 TRIM41Q8WV44 630 aa29.39■■■□□ 2.3
CLDND1-221ENST00000510541 ARHGEF11O15085 1522 aa29.28■■■□□ 2.28
CLDND1-221ENST00000510541 CEP170Q5SW79 1584 aa29.25■■■□□ 2.27
CLDND1-221ENST00000510541 CARMIL1Q5VZK9 1371 aa29.25■■■□□ 2.27
CLDND1-221ENST00000510541 RIMBP3CA6NJZ7 1639 aa29.23■■■□□ 2.27
CLDND1-221ENST00000510541 RIMBP3BA6NNM3 1639 aa29.23■■■□□ 2.27
CLDND1-221ENST00000510541 RIMBP3Q9UFD9 1639 aa29.23■■■□□ 2.27
CLDND1-221ENST00000510541 EEA1Q15075 1411 aa29.17■■■□□ 2.26
CLDND1-221ENST00000510541 SHROOM2Q13796 1616 aa29.16■■■□□ 2.26
CLDND1-221ENST00000510541 RUSC2Q8N2Y8 1516 aa29.14■■■□□ 2.25
CLDND1-221ENST00000510541 KIAA0586Q9BVV6 1533 aa29.12■■■□□ 2.25
CLDND1-221ENST00000510541 RAPGEF2Q9Y4G8 1499 aa29.1■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms