RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 NISCHQ9Y2I1 1504 aa27.28■■□□□ 1.96
LIMCH1-210ENST00000509454 CCDC180Q9P1Z9 1646 aa24.18■■□□□ 1.46
LIMCH1-210ENST00000509454 ABCC9O60706 1549 aa23.63■■□□□ 1.37
LIMCH1-210ENST00000509454 DCAF8L2P0C7V8 631 aa22.93■■□□□ 1.26
LIMCH1-210ENST00000509454 AEBP2Q6ZN18 517 aaPredicted RBP22.86■■□□□ 1.25
LIMCH1-210ENST00000509454 ZCCHC6Q5VYS8 1495 aaKnown RBP22.74■■□□□ 1.23
LIMCH1-210ENST00000509454 RB1CC1Q8TDY2 1594 aa22.74■■□□□ 1.23
LIMCH1-210ENST00000509454 NACADO15069 1562 aa22.71■■□□□ 1.23
LIMCH1-210ENST00000509454 MYO15BQ96JP2 1530 aa22.54■■□□□ 1.2
LIMCH1-210ENST00000509454 DCAF1Q9Y4B6 1507 aa22.52■■□□□ 1.2
LIMCH1-210ENST00000509454 UNC13AQ9UPW8 1703 aa22.2■■□□□ 1.14
LIMCH1-210ENST00000509454 SCRIBQ14160 1630 aa22.17■■□□□ 1.14
LIMCH1-210ENST00000509454 PABPN1Q86U42 306 aaKnown RBP eCLIP22.13■■□□□ 1.13
LIMCH1-210ENST00000509454 BICRAQ9NZM4 1560 aa21.99■■□□□ 1.11
LIMCH1-210ENST00000509454 CHIC1Q5VXU3 224 aa21.94■■□□□ 1.1
LIMCH1-210ENST00000509454 SHROOM4Q9ULL8 1493 aa21.79■■□□□ 1.08
LIMCH1-210ENST00000509454 DNAJC5BQ9UF47 199 aa21.5■■□□□ 1.03
LIMCH1-210ENST00000509454 EIF4G1Q04637 1599 aaKnown RBP21.43■■□□□ 1.02
LIMCH1-210ENST00000509454 CC2D2AQ9P2K1 1620 aa21.33■■□□□ 1.01
LIMCH1-210ENST00000509454 CECR2Q9BXF3 1484 aa21.26■□□□□ 0.99
LIMCH1-210ENST00000509454 BAZ1AQ9NRL2 1556 aaPredicted RBP21.16■□□□□ 0.98
LIMCH1-210ENST00000509454 SMARCA4P51532 1647 aa21.16■□□□□ 0.98
LIMCH1-210ENST00000509454 MROH2BQ7Z745 1585 aa21.05■□□□□ 0.96
LIMCH1-210ENST00000509454 ATAD2BQ9ULI0 1458 aa21■□□□□ 0.95
LIMCH1-210ENST00000509454 SMARCA2P51531 1590 aa20.99■□□□□ 0.95
LIMCH1-210ENST00000509454 NCAPD3P42695 1498 aa20.94■□□□□ 0.94
LIMCH1-210ENST00000509454 BAZ1BQ9UIG0 1483 aaKnown RBP20.89■□□□□ 0.93
LIMCH1-210ENST00000509454 PEG3Q9GZU2 1588 aa20.87■□□□□ 0.93
LIMCH1-210ENST00000509454 WIZO95785 1651 aa20.86■□□□□ 0.93
LIMCH1-210ENST00000509454 HMGXB3Q12766 1538 aa20.85■□□□□ 0.93
LIMCH1-210ENST00000509454 RSF1Q96T23 1441 aaPredicted RBP20.85■□□□□ 0.93
LIMCH1-210ENST00000509454 TOP2AP11388 1531 aaKnown RBP20.62■□□□□ 0.89
LIMCH1-210ENST00000509454 SUPT5HO00267 1087 aaKnown RBP20.58■□□□□ 0.89
LIMCH1-210ENST00000509454 NESP48681 1621 aa20.46■□□□□ 0.87
LIMCH1-210ENST00000509454 CCDC88BA6NC98 1476 aa20.39■□□□□ 0.85
LIMCH1-210ENST00000509454 ERCC6Q03468 1493 aa20.39■□□□□ 0.85
LIMCH1-210ENST00000509454 LAMC3Q9Y6N6 1575 aa20.39■□□□□ 0.85
LIMCH1-210ENST00000509454 CADPSQ9ULU8 1353 aa20.37■□□□□ 0.85
LIMCH1-210ENST00000509454 PDS5BQ9NTI5 1447 aa20.28■□□□□ 0.84
LIMCH1-210ENST00000509454 CFTRP13569 1480 aa20.25■□□□□ 0.83
LIMCH1-210ENST00000509454 KIF21AQ7Z4S6 1674 aa20.22■□□□□ 0.83
LIMCH1-210ENST00000509454 FANCD2Q9BXW9 1451 aa20.16■□□□□ 0.82
LIMCH1-210ENST00000509454 PRDM2Q13029 1718 aa20.14■□□□□ 0.81
LIMCH1-210ENST00000509454 CEP164Q9UPV0 1460 aa20.13■□□□□ 0.81
LIMCH1-210ENST00000509454 THOC2Q8NI27 1593 aaKnown RBP20.07■□□□□ 0.8
LIMCH1-210ENST00000509454 MRC2Q9UBG0 1479 aa20.06■□□□□ 0.8
LIMCH1-210ENST00000509454 CUX2O14529 1486 aa20.03■□□□□ 0.8
LIMCH1-210ENST00000509454 WDR62O43379 1518 aa19.95■□□□□ 0.78
LIMCH1-210ENST00000509454 URB2Q14146 1524 aaKnown RBP19.93■□□□□ 0.78
LIMCH1-210ENST00000509454 TOPBP1Q92547 1522 aa19.84■□□□□ 0.77
LIMCH1-210ENST00000509454 ABCC8Q09428 1581 aa19.84■□□□□ 0.77
LIMCH1-210ENST00000509454 DNMBPQ6XZF7 1577 aa19.83■□□□□ 0.77
LIMCH1-210ENST00000509454 CUX1P39880 1505 aa19.75■□□□□ 0.75
LIMCH1-210ENST00000509454 WRNQ14191 1432 aaPredicted RBP eCLIP19.69■□□□□ 0.74
LIMCH1-210ENST00000509454 IFT140Q96RY7 1462 aa19.69■□□□□ 0.74
LIMCH1-210ENST00000509454 POLA1P09884 1462 aaPredicted RBP19.68■□□□□ 0.74
LIMCH1-210ENST00000509454 FGD5Q6ZNL6 1462 aa19.68■□□□□ 0.74
LIMCH1-210ENST00000509454 SOGA1O94964 1423 aa19.64■□□□□ 0.73
LIMCH1-210ENST00000509454 RAD54L2Q9Y4B4 1467 aa19.63■□□□□ 0.73
LIMCH1-210ENST00000509454 SYNJ1O43426 1573 aa19.62■□□□□ 0.73
LIMCH1-210ENST00000509454 TOP2BQ02880 1626 aa19.6■□□□□ 0.73
LIMCH1-210ENST00000509454 ZNF608Q9ULD9 1512 aaPredicted RBP19.59■□□□□ 0.73
LIMCH1-210ENST00000509454 BIVM-ERCC5R4GMW8 1640 aa19.59■□□□□ 0.73
LIMCH1-210ENST00000509454 TARBP1Q13395 1621 aaKnown RBP19.58■□□□□ 0.73
LIMCH1-210ENST00000509454 EIF4G3O43432 1585 aaKnown RBP19.53■□□□□ 0.72
LIMCH1-210ENST00000509454 TDRD9Q8NDG6 1382 aaKnown RBP19.52■□□□□ 0.72
LIMCH1-210ENST00000509454 AQRO60306 1485 aaKnown RBP eCLIP19.52■□□□□ 0.72
LIMCH1-210ENST00000509454 WDR97A6NE52 1622 aa19.46■□□□□ 0.71
LIMCH1-210ENST00000509454 SENP3Q9H4L4 574 aaPredicted RBP19.46■□□□□ 0.71
LIMCH1-210ENST00000509454 ABCA10Q8WWZ4 1543 aa19.45■□□□□ 0.7
LIMCH1-210ENST00000509454 TRIM41Q8WV44 630 aa19.41■□□□□ 0.7
LIMCH1-210ENST00000509454 GAPVD1Q14C86 1478 aa19.4■□□□□ 0.7
LIMCH1-210ENST00000509454 GRIN2BQ13224 1484 aa19.37■□□□□ 0.69
LIMCH1-210ENST00000509454 ABCA5Q8WWZ7 1642 aa19.36■□□□□ 0.69
LIMCH1-210ENST00000509454 FBLN2P98095 1184 aa19.36■□□□□ 0.69
LIMCH1-210ENST00000509454 PBRM1Q86U86 1689 aa19.35■□□□□ 0.69
LIMCH1-210ENST00000509454 SNAPC4Q5SXM2 1469 aa19.35■□□□□ 0.69
LIMCH1-210ENST00000509454 MAGI1Q96QZ7 1491 aaPredicted RBP19.29■□□□□ 0.68
LIMCH1-210ENST00000509454 OSCARQ8IYS5 282 aa19.28■□□□□ 0.68
LIMCH1-210ENST00000509454 CHMP7Q8WUX9 453 aaPredicted RBP19.28■□□□□ 0.68
LIMCH1-210ENST00000509454 KIF27Q86VH2 1401 aa19.28■□□□□ 0.68
LIMCH1-210ENST00000509454 CHD1O14646 1710 aa19.27■□□□□ 0.68
LIMCH1-210ENST00000509454 DNAJC5Q9H3Z4 198 aa19.25■□□□□ 0.67
LIMCH1-210ENST00000509454 PHF23Q9BUL5 403 aaPredicted RBP19.24■□□□□ 0.67
LIMCH1-210ENST00000509454 ERICH3Q5RHP9 1530 aa19.23■□□□□ 0.67
LIMCH1-210ENST00000509454 SYNJ2O15056 1496 aa19.22■□□□□ 0.67
LIMCH1-210ENST00000509454 ADAMTS12P58397 1594 aa19.19■□□□□ 0.66
LIMCH1-210ENST00000509454 FHAD1B1AJZ9 1412 aa19.17■□□□□ 0.66
LIMCH1-210ENST00000509454 IGF1RP08069 1367 aa19.15■□□□□ 0.66
LIMCH1-210ENST00000509454 RUSC2Q8N2Y8 1516 aa19.14■□□□□ 0.65
LIMCH1-210ENST00000509454 GRIN2AQ12879 1464 aa19.12■□□□□ 0.65
LIMCH1-210ENST00000509454 CUL7Q14999 1698 aa19.11■□□□□ 0.65
LIMCH1-210ENST00000509454 CARMIL1Q5VZK9 1371 aa19.07■□□□□ 0.64
LIMCH1-210ENST00000509454 FAM9AQ8IZU1 332 aaPredicted RBP19.05■□□□□ 0.64
LIMCH1-210ENST00000509454 CEP170Q5SW79 1584 aa19.01■□□□□ 0.63
LIMCH1-210ENST00000509454 CLASP1Q7Z460 1538 aa19.01■□□□□ 0.63
LIMCH1-210ENST00000509454 NUP160Q12769 1436 aa18.99■□□□□ 0.63
LIMCH1-210ENST00000509454 EEA1Q15075 1411 aa18.98■□□□□ 0.63
LIMCH1-210ENST00000509454 RAPGEF2Q9Y4G8 1499 aa18.97■□□□□ 0.63
LIMCH1-210ENST00000509454 CSRNP3Q8WYN3 585 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 131 ms