RNA–Protein interactions for RNA: ENST00000509388.5

RNF4-213, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-213ENST00000509388 NISCHQ9Y2I1 1504 aa34.96■■■■□ 3.19
RNF4-213ENST00000509388 CCDC180Q9P1Z9 1646 aa30.81■■■□□ 2.52
RNF4-213ENST00000509388 ABCC9O60706 1549 aa29.91■■■□□ 2.38
RNF4-213ENST00000509388 DCAF8L2P0C7V8 631 aa29.31■■■□□ 2.28
RNF4-213ENST00000509388 ZCCHC6Q5VYS8 1495 aaKnown RBP29.18■■■□□ 2.26
RNF4-213ENST00000509388 NACADO15069 1562 aa28.96■■■□□ 2.23
RNF4-213ENST00000509388 DCAF1Q9Y4B6 1507 aa28.91■■■□□ 2.22
RNF4-213ENST00000509388 RB1CC1Q8TDY2 1594 aa28.9■■■□□ 2.22
RNF4-213ENST00000509388 MYO15BQ96JP2 1530 aa28.88■■■□□ 2.21
RNF4-213ENST00000509388 SCRIBQ14160 1630 aa28.24■■■□□ 2.11
RNF4-213ENST00000509388 PABPN1Q86U42 306 aaKnown RBP eCLIP28.1■■■□□ 2.09
RNF4-213ENST00000509388 UNC13AQ9UPW8 1703 aa28.07■■■□□ 2.08
RNF4-213ENST00000509388 SHROOM4Q9ULL8 1493 aa28■■■□□ 2.07
RNF4-213ENST00000509388 BICRAQ9NZM4 1560 aa27.92■■■□□ 2.06
RNF4-213ENST00000509388 EIF4G1Q04637 1599 aaKnown RBP27.22■■□□□ 1.95
RNF4-213ENST00000509388 CECR2Q9BXF3 1484 aa27.2■■□□□ 1.95
RNF4-213ENST00000509388 BAZ1AQ9NRL2 1556 aaPredicted RBP27.09■■□□□ 1.93
RNF4-213ENST00000509388 DNAJC5BQ9UF47 199 aa27.07■■□□□ 1.92
RNF4-213ENST00000509388 SMARCA4P51532 1647 aa27.01■■□□□ 1.91
RNF4-213ENST00000509388 CC2D2AQ9P2K1 1620 aa27■■□□□ 1.91
RNF4-213ENST00000509388 MROH2BQ7Z745 1585 aa26.94■■□□□ 1.9
RNF4-213ENST00000509388 RSF1Q96T23 1441 aaPredicted RBP26.82■■□□□ 1.88
RNF4-213ENST00000509388 ATAD2BQ9ULI0 1458 aa26.81■■□□□ 1.88
RNF4-213ENST00000509388 SMARCA2P51531 1590 aa26.8■■□□□ 1.88
RNF4-213ENST00000509388 NCAPD3P42695 1498 aa26.74■■□□□ 1.87
RNF4-213ENST00000509388 PEG3Q9GZU2 1588 aa26.7■■□□□ 1.86
RNF4-213ENST00000509388 BAZ1BQ9UIG0 1483 aaKnown RBP26.65■■□□□ 1.86
RNF4-213ENST00000509388 WIZO95785 1651 aa26.65■■□□□ 1.86
RNF4-213ENST00000509388 SUPT5HO00267 1087 aaKnown RBP26.62■■□□□ 1.85
RNF4-213ENST00000509388 HMGXB3Q12766 1538 aa26.59■■□□□ 1.85
RNF4-213ENST00000509388 TOP2AP11388 1531 aaKnown RBP26.41■■□□□ 1.82
RNF4-213ENST00000509388 CCDC88BA6NC98 1476 aa26.14■■□□□ 1.78
RNF4-213ENST00000509388 CADPSQ9ULU8 1353 aa26.03■■□□□ 1.76
RNF4-213ENST00000509388 NESP48681 1621 aa25.96■■□□□ 1.75
RNF4-213ENST00000509388 LAMC3Q9Y6N6 1575 aa25.94■■□□□ 1.74
RNF4-213ENST00000509388 CFTRP13569 1480 aa25.91■■□□□ 1.74
RNF4-213ENST00000509388 PDS5BQ9NTI5 1447 aa25.85■■□□□ 1.73
RNF4-213ENST00000509388 ERCC6Q03468 1493 aa25.8■■□□□ 1.72
RNF4-213ENST00000509388 FANCD2Q9BXW9 1451 aa25.71■■□□□ 1.71
RNF4-213ENST00000509388 CEP164Q9UPV0 1460 aa25.64■■□□□ 1.69
RNF4-213ENST00000509388 PRDM2Q13029 1718 aa25.58■■□□□ 1.69
RNF4-213ENST00000509388 KIF21AQ7Z4S6 1674 aa25.58■■□□□ 1.68
RNF4-213ENST00000509388 MRC2Q9UBG0 1479 aa25.51■■□□□ 1.67
RNF4-213ENST00000509388 THOC2Q8NI27 1593 aaKnown RBP25.39■■□□□ 1.66
RNF4-213ENST00000509388 ABCC8Q09428 1581 aa25.38■■□□□ 1.65
RNF4-213ENST00000509388 URB2Q14146 1524 aaKnown RBP25.37■■□□□ 1.65
RNF4-213ENST00000509388 WDR62O43379 1518 aa25.35■■□□□ 1.65
RNF4-213ENST00000509388 WRNQ14191 1432 aaPredicted RBP eCLIP25.32■■□□□ 1.642e-6■■■■■ 29.9
RNF4-213ENST00000509388 TOPBP1Q92547 1522 aa25.31■■□□□ 1.64
RNF4-213ENST00000509388 CUX2O14529 1486 aa25.3■■□□□ 1.64
RNF4-213ENST00000509388 DNMBPQ6XZF7 1577 aa25.3■■□□□ 1.64
RNF4-213ENST00000509388 CUX1P39880 1505 aa25.25■■□□□ 1.63
RNF4-213ENST00000509388 FGD5Q6ZNL6 1462 aa25.14■■□□□ 1.61
RNF4-213ENST00000509388 SYNJ1O43426 1573 aa25.14■■□□□ 1.61
RNF4-213ENST00000509388 TRIM41Q8WV44 630 aa25.13■■□□□ 1.61
RNF4-213ENST00000509388 TOP2BQ02880 1626 aa25.12■■□□□ 1.61
RNF4-213ENST00000509388 POLA1P09884 1462 aaPredicted RBP25.12■■□□□ 1.61
RNF4-213ENST00000509388 SOGA1O94964 1423 aa25.11■■□□□ 1.61
RNF4-213ENST00000509388 IFT140Q96RY7 1462 aa25.09■■□□□ 1.61
RNF4-213ENST00000509388 BIVM-ERCC5R4GMW8 1640 aa25.08■■□□□ 1.61
RNF4-213ENST00000509388 RAD54L2Q9Y4B4 1467 aa25.04■■□□□ 1.6
RNF4-213ENST00000509388 CHIC1Q5VXU3 224 aa25.01■■□□□ 1.59
RNF4-213ENST00000509388 TARBP1Q13395 1621 aaKnown RBP24.94■■□□□ 1.58
RNF4-213ENST00000509388 TDRD9Q8NDG6 1382 aaKnown RBP24.92■■□□□ 1.58
RNF4-213ENST00000509388 ZNF608Q9ULD9 1512 aaPredicted RBP24.91■■□□□ 1.58
RNF4-213ENST00000509388 ABCA10Q8WWZ4 1543 aa24.9■■□□□ 1.58
RNF4-213ENST00000509388 AQRO60306 1485 aaKnown RBP eCLIP24.87■■□□□ 1.573e-8■■■■■ 35.4
RNF4-213ENST00000509388 KIF27Q86VH2 1401 aa24.79■■□□□ 1.56
RNF4-213ENST00000509388 GAPVD1Q14C86 1478 aa24.79■■□□□ 1.56
RNF4-213ENST00000509388 WDR97A6NE52 1622 aa24.78■■□□□ 1.56
RNF4-213ENST00000509388 EIF4G3O43432 1585 aaKnown RBP24.77■■□□□ 1.56
RNF4-213ENST00000509388 GRIN2BQ13224 1484 aa24.73■■□□□ 1.55
RNF4-213ENST00000509388 ABCA5Q8WWZ7 1642 aa24.69■■□□□ 1.54
RNF4-213ENST00000509388 FBLN2P98095 1184 aa24.63■■□□□ 1.53
RNF4-213ENST00000509388 SNAPC4Q5SXM2 1469 aa24.62■■□□□ 1.53
RNF4-213ENST00000509388 RUSC2Q8N2Y8 1516 aa24.61■■□□□ 1.53
RNF4-213ENST00000509388 FAM9AQ8IZU1 332 aaPredicted RBP24.61■■□□□ 1.53
RNF4-213ENST00000509388 IGF1RP08069 1367 aa24.61■■□□□ 1.53
RNF4-213ENST00000509388 ERICH3Q5RHP9 1530 aa24.61■■□□□ 1.53
RNF4-213ENST00000509388 CHMP7Q8WUX9 453 aaPredicted RBP24.6■■□□□ 1.53
RNF4-213ENST00000509388 MAGI1Q96QZ7 1491 aaPredicted RBP24.59■■□□□ 1.53
RNF4-213ENST00000509388 PBRM1Q86U86 1689 aa24.58■■□□□ 1.53
RNF4-213ENST00000509388 EEA1Q15075 1411 aa24.57■■□□□ 1.52
RNF4-213ENST00000509388 CSRNP3Q8WYN3 585 aa24.55■■□□□ 1.52
RNF4-213ENST00000509388 FHAD1B1AJZ9 1412 aa24.52■■□□□ 1.52
RNF4-213ENST00000509388 CARMIL1Q5VZK9 1371 aa24.51■■□□□ 1.51
RNF4-213ENST00000509388 SYNJ2O15056 1496 aa24.51■■□□□ 1.51
RNF4-213ENST00000509388 OSCARQ8IYS5 282 aa24.46■■□□□ 1.51
RNF4-213ENST00000509388 ADAMTS12P58397 1594 aa24.46■■□□□ 1.51
RNF4-213ENST00000509388 CUL7Q14999 1698 aa24.43■■□□□ 1.5
RNF4-213ENST00000509388 GRIN2AQ12879 1464 aa24.38■■□□□ 1.49
RNF4-213ENST00000509388 RAPGEF2Q9Y4G8 1499 aa24.38■■□□□ 1.49
RNF4-213ENST00000509388 CHD1O14646 1710 aa24.35■■□□□ 1.49
RNF4-213ENST00000509388 PRXQ9BXM0 1461 aa24.33■■□□□ 1.49
RNF4-213ENST00000509388 EHMT2Q96KQ7 1210 aa24.28■■□□□ 1.48
RNF4-213ENST00000509388 NUP160Q12769 1436 aa24.25■■□□□ 1.47
RNF4-213ENST00000509388 UBTFP17480 764 aaKnown RBP24.21■■□□□ 1.47
RNF4-213ENST00000509388 KIF21BO75037 1637 aa24.19■■□□□ 1.46
RNF4-213ENST00000509388 CEP170Q5SW79 1584 aa24.19■■□□□ 1.46
RNF4-213ENST00000509388 GOLGA3Q08378 1498 aa24.17■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms