RNA–Protein interactions for RNA: ENST00000507597.5

USP53-203, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 3

Gene USP53, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-203ENST00000507597 NISCHQ9Y2I1 1504 aa47.37■■■■■ 5.17
USP53-203ENST00000507597 CCDC180Q9P1Z9 1646 aa41.87■■■■■ 4.29
USP53-203ENST00000507597 ABCC9O60706 1549 aa40.42■■■■■ 4.06
USP53-203ENST00000507597 ZCCHC6Q5VYS8 1495 aaKnown RBP39.55■■■■□ 3.92
USP53-203ENST00000507597 DCAF8L2P0C7V8 631 aa39.52■■■■□ 3.92
USP53-203ENST00000507597 NACADO15069 1562 aa39.32■■■■□ 3.88
USP53-203ENST00000507597 MYO15BQ96JP2 1530 aa39.28■■■■□ 3.88
USP53-203ENST00000507597 DCAF1Q9Y4B6 1507 aa39.28■■■■□ 3.88
USP53-203ENST00000507597 RB1CC1Q8TDY2 1594 aa39.22■■■■□ 3.87
USP53-203ENST00000507597 SCRIBQ14160 1630 aa38.19■■■■□ 3.7
USP53-203ENST00000507597 UNC13AQ9UPW8 1703 aa38.09■■■■□ 3.69
USP53-203ENST00000507597 PABPN1Q86U42 306 aaKnown RBP eCLIP37.9■■■■□ 3.66
USP53-203ENST00000507597 BICRAQ9NZM4 1560 aa37.82■■■■□ 3.65
USP53-203ENST00000507597 SHROOM4Q9ULL8 1493 aa37.72■■■■□ 3.63
USP53-203ENST00000507597 EIF4G1Q04637 1599 aaKnown RBP36.88■■■■□ 3.49
USP53-203ENST00000507597 CECR2Q9BXF3 1484 aa36.75■■■■□ 3.47
USP53-203ENST00000507597 BAZ1AQ9NRL2 1556 aaPredicted RBP36.74■■■■□ 3.47
USP53-203ENST00000507597 DNAJC5BQ9UF47 199 aa36.66■■■■□ 3.46
USP53-203ENST00000507597 SMARCA4P51532 1647 aa36.61■■■■□ 3.45
USP53-203ENST00000507597 CC2D2AQ9P2K1 1620 aa36.57■■■■□ 3.44
USP53-203ENST00000507597 MROH2BQ7Z745 1585 aa36.44■■■■□ 3.42
USP53-203ENST00000507597 SMARCA2P51531 1590 aa36.37■■■■□ 3.41
USP53-203ENST00000507597 ATAD2BQ9ULI0 1458 aa36.31■■■■□ 3.4
USP53-203ENST00000507597 RSF1Q96T23 1441 aaPredicted RBP36.29■■■■□ 3.4
USP53-203ENST00000507597 PEG3Q9GZU2 1588 aa36.26■■■■□ 3.39
USP53-203ENST00000507597 NCAPD3P42695 1498 aa36.25■■■■□ 3.39
USP53-203ENST00000507597 HMGXB3Q12766 1538 aa36.1■■■■□ 3.37
USP53-203ENST00000507597 BAZ1BQ9UIG0 1483 aaKnown RBP36.1■■■■□ 3.37
USP53-203ENST00000507597 WIZO95785 1651 aa36.06■■■■□ 3.36
USP53-203ENST00000507597 SUPT5HO00267 1087 aaKnown RBP35.88■■■■□ 3.33
USP53-203ENST00000507597 TOP2AP11388 1531 aaKnown RBP35.8■■■■□ 3.32
USP53-203ENST00000507597 CCDC88BA6NC98 1476 aa35.37■■■■□ 3.25
USP53-203ENST00000507597 CADPSQ9ULU8 1353 aa35.26■■■■□ 3.24
USP53-203ENST00000507597 LAMC3Q9Y6N6 1575 aa35.22■■■■□ 3.23
USP53-203ENST00000507597 CFTRP13569 1480 aa35.11■■■■□ 3.21
USP53-203ENST00000507597 NESP48681 1621 aa35.07■■■■□ 3.21
USP53-203ENST00000507597 PDS5BQ9NTI5 1447 aa35.06■■■■□ 3.2
USP53-203ENST00000507597 ERCC6Q03468 1493 aa34.93■■■■□ 3.18
USP53-203ENST00000507597 FANCD2Q9BXW9 1451 aa34.81■■■■□ 3.16
USP53-203ENST00000507597 PRDM2Q13029 1718 aa34.81■■■■□ 3.16
USP53-203ENST00000507597 CEP164Q9UPV0 1460 aa34.75■■■■□ 3.15
USP53-203ENST00000507597 KIF21AQ7Z4S6 1674 aa34.66■■■■□ 3.14
USP53-203ENST00000507597 MRC2Q9UBG0 1479 aa34.56■■■■□ 3.12
USP53-203ENST00000507597 ABCC8Q09428 1581 aa34.49■■■■□ 3.11
USP53-203ENST00000507597 THOC2Q8NI27 1593 aaKnown RBP34.42■■■■□ 3.1
USP53-203ENST00000507597 WDR62O43379 1518 aa34.37■■■■□ 3.09
USP53-203ENST00000507597 CUX2O14529 1486 aa34.35■■■■□ 3.09
USP53-203ENST00000507597 URB2Q14146 1524 aaKnown RBP34.34■■■■□ 3.09
USP53-203ENST00000507597 DNMBPQ6XZF7 1577 aa34.31■■■■□ 3.08
USP53-203ENST00000507597 TOPBP1Q92547 1522 aa34.28■■■■□ 3.08
USP53-203ENST00000507597 WRNQ14191 1432 aaPredicted RBP eCLIP34.28■■■■□ 3.08
USP53-203ENST00000507597 CUX1P39880 1505 aa34.17■■■■□ 3.06
USP53-203ENST00000507597 TOP2BQ02880 1626 aa34.07■■■■□ 3.04
USP53-203ENST00000507597 BIVM-ERCC5R4GMW8 1640 aa34.04■■■■□ 3.04
USP53-203ENST00000507597 FGD5Q6ZNL6 1462 aa34.02■■■■□ 3.04
USP53-203ENST00000507597 POLA1P09884 1462 aaPredicted RBP34.01■■■■□ 3.04
USP53-203ENST00000507597 IFT140Q96RY7 1462 aa34.01■■■■□ 3.04
USP53-203ENST00000507597 SYNJ1O43426 1573 aa34■■■■□ 3.03
USP53-203ENST00000507597 SOGA1O94964 1423 aa33.99■■■■□ 3.03
USP53-203ENST00000507597 TRIM41Q8WV44 630 aa33.96■■■■□ 3.03
USP53-203ENST00000507597 DNAJC5Q9H3Z4 198 aa33.84■■■■□ 3.01
USP53-203ENST00000507597 RAD54L2Q9Y4B4 1467 aa33.83■■■■□ 3.01
USP53-203ENST00000507597 TARBP1Q13395 1621 aaKnown RBP33.79■■■■□ 3
USP53-203ENST00000507597 CHIC1Q5VXU3 224 aa33.77■■■■□ 3
USP53-203ENST00000507597 ABCA10Q8WWZ4 1543 aa33.75■■■□□ 2.99
USP53-203ENST00000507597 WDR97A6NE52 1622 aa33.73■■■□□ 2.99
USP53-203ENST00000507597 TDRD9Q8NDG6 1382 aaKnown RBP33.66■■■□□ 2.98
USP53-203ENST00000507597 ZNF608Q9ULD9 1512 aaPredicted RBP33.66■■■□□ 2.98
USP53-203ENST00000507597 AQRO60306 1485 aaKnown RBP eCLIP33.61■■■□□ 2.97
USP53-203ENST00000507597 KIF27Q86VH2 1401 aa33.59■■■□□ 2.97
USP53-203ENST00000507597 GAPVD1Q14C86 1478 aa33.58■■■□□ 2.97
USP53-203ENST00000507597 EIF4G3O43432 1585 aaKnown RBP33.57■■■□□ 2.96
USP53-203ENST00000507597 GRIN2BQ13224 1484 aa33.52■■■□□ 2.96
USP53-203ENST00000507597 ABCA5Q8WWZ7 1642 aa33.48■■■□□ 2.95
USP53-203ENST00000507597 ERICH3Q5RHP9 1530 aa33.39■■■□□ 2.94
USP53-203ENST00000507597 MAGI1Q96QZ7 1491 aaPredicted RBP33.37■■■□□ 2.93
USP53-203ENST00000507597 EEA1Q15075 1411 aa33.36■■■□□ 2.93
USP53-203ENST00000507597 PBRM1Q86U86 1689 aa33.35■■■□□ 2.93
USP53-203ENST00000507597 SNAPC4Q5SXM2 1469 aa33.32■■■□□ 2.92
USP53-203ENST00000507597 IGF1RP08069 1367 aa33.29■■■□□ 2.92
USP53-203ENST00000507597 CHMP7Q8WUX9 453 aaPredicted RBP33.28■■■□□ 2.92
USP53-203ENST00000507597 FBLN2P98095 1184 aa33.24■■■□□ 2.91
USP53-203ENST00000507597 FHAD1B1AJZ9 1412 aa33.24■■■□□ 2.91
USP53-203ENST00000507597 SYNJ2O15056 1496 aa33.21■■■□□ 2.91
USP53-203ENST00000507597 RUSC2Q8N2Y8 1516 aa33.21■■■□□ 2.91
USP53-203ENST00000507597 CSRNP3Q8WYN3 585 aa33.2■■■□□ 2.91
USP53-203ENST00000507597 CUL7Q14999 1698 aa33.18■■■□□ 2.9
USP53-203ENST00000507597 CARMIL1Q5VZK9 1371 aa33.18■■■□□ 2.9
USP53-203ENST00000507597 ADAMTS12P58397 1594 aa33.14■■■□□ 2.9
USP53-203ENST00000507597 OSCARQ8IYS5 282 aa33.12■■■□□ 2.89
USP53-203ENST00000507597 FAM9AQ8IZU1 332 aaPredicted RBP33.12■■■□□ 2.89
USP53-203ENST00000507597 GRIN2AQ12879 1464 aa33.04■■■□□ 2.88
USP53-203ENST00000507597 RAPGEF2Q9Y4G8 1499 aa33.02■■■□□ 2.88
USP53-203ENST00000507597 CHD1O14646 1710 aa33■■■□□ 2.87
USP53-203ENST00000507597 PRXQ9BXM0 1461 aa32.96■■■□□ 2.87
USP53-203ENST00000507597 NUP160Q12769 1436 aa32.85■■■□□ 2.85
USP53-203ENST00000507597 KIF21BO75037 1637 aa32.8■■■□□ 2.84
USP53-203ENST00000507597 CEP170Q5SW79 1584 aa32.75■■■□□ 2.83
USP53-203ENST00000507597 KIAA0586Q9BVV6 1533 aa32.74■■■□□ 2.83
USP53-203ENST00000507597 GOLGA3Q08378 1498 aa32.74■■■□□ 2.83
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms