RNA–Protein interactions for RNA: ENST00000507247.5

RNF4-208, Transcript of ring finger protein 4, humanhuman

TSL 1 (best)

Gene RNF4, Length 616 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-208ENST00000507247 NISCHQ9Y2I1 1504 aa33.56■■■□□ 2.96
RNF4-208ENST00000507247 CCDC180Q9P1Z9 1646 aa29.61■■■□□ 2.33
RNF4-208ENST00000507247 ABCC9O60706 1549 aa28.48■■■□□ 2.15
RNF4-208ENST00000507247 ZCCHC6Q5VYS8 1495 aaKnown RBP28.09■■■□□ 2.09
RNF4-208ENST00000507247 DCAF1Q9Y4B6 1507 aa27.77■■■□□ 2.04
RNF4-208ENST00000507247 DCAF8L2P0C7V8 631 aa27.75■■■□□ 2.03
RNF4-208ENST00000507247 MYO15BQ96JP2 1530 aa27.66■■■□□ 2.02
RNF4-208ENST00000507247 NACADO15069 1562 aa27.65■■■□□ 2.02
RNF4-208ENST00000507247 RB1CC1Q8TDY2 1594 aa27.56■■■□□ 2
RNF4-208ENST00000507247 SCRIBQ14160 1630 aa27.09■■□□□ 1.93
RNF4-208ENST00000507247 UNC13AQ9UPW8 1703 aa27.07■■□□□ 1.92
RNF4-208ENST00000507247 SHROOM4Q9ULL8 1493 aa26.88■■□□□ 1.89
RNF4-208ENST00000507247 BICRAQ9NZM4 1560 aa26.77■■□□□ 1.88
RNF4-208ENST00000507247 PABPN1Q86U42 306 aaKnown RBP eCLIP26.63■■□□□ 1.85
RNF4-208ENST00000507247 DNAJC5BQ9UF47 199 aa26.62■■□□□ 1.85
RNF4-208ENST00000507247 CECR2Q9BXF3 1484 aa26.11■■□□□ 1.77
RNF4-208ENST00000507247 EIF4G1Q04637 1599 aaKnown RBP25.99■■□□□ 1.75
RNF4-208ENST00000507247 SMARCA4P51532 1647 aa25.96■■□□□ 1.75
RNF4-208ENST00000507247 BAZ1AQ9NRL2 1556 aaPredicted RBP25.95■■□□□ 1.75
RNF4-208ENST00000507247 MROH2BQ7Z745 1585 aa25.9■■□□□ 1.74
RNF4-208ENST00000507247 RSF1Q96T23 1441 aaPredicted RBP25.78■■□□□ 1.72
RNF4-208ENST00000507247 CC2D2AQ9P2K1 1620 aa25.75■■□□□ 1.71
RNF4-208ENST00000507247 WIZO95785 1651 aa25.68■■□□□ 1.7
RNF4-208ENST00000507247 PEG3Q9GZU2 1588 aa25.66■■□□□ 1.7
RNF4-208ENST00000507247 ATAD2BQ9ULI0 1458 aa25.63■■□□□ 1.69
RNF4-208ENST00000507247 SMARCA2P51531 1590 aa25.61■■□□□ 1.69
RNF4-208ENST00000507247 SUPT5HO00267 1087 aaKnown RBP25.53■■□□□ 1.68
RNF4-208ENST00000507247 NCAPD3P42695 1498 aa25.5■■□□□ 1.67
RNF4-208ENST00000507247 HMGXB3Q12766 1538 aa25.46■■□□□ 1.67
RNF4-208ENST00000507247 BAZ1BQ9UIG0 1483 aaKnown RBP25.44■■□□□ 1.66
RNF4-208ENST00000507247 TOP2AP11388 1531 aaKnown RBP25.4■■□□□ 1.66
RNF4-208ENST00000507247 CCDC88BA6NC98 1476 aa25.09■■□□□ 1.61
RNF4-208ENST00000507247 NESP48681 1621 aa24.79■■□□□ 1.56
RNF4-208ENST00000507247 CADPSQ9ULU8 1353 aa24.79■■□□□ 1.56
RNF4-208ENST00000507247 CFTRP13569 1480 aa24.77■■□□□ 1.56
RNF4-208ENST00000507247 LAMC3Q9Y6N6 1575 aa24.76■■□□□ 1.55
RNF4-208ENST00000507247 PRDM2Q13029 1718 aa24.73■■□□□ 1.55
RNF4-208ENST00000507247 KIF21AQ7Z4S6 1674 aa24.56■■□□□ 1.52
RNF4-208ENST00000507247 PDS5BQ9NTI5 1447 aa24.52■■□□□ 1.52
RNF4-208ENST00000507247 FANCD2Q9BXW9 1451 aa24.52■■□□□ 1.52
RNF4-208ENST00000507247 ERCC6Q03468 1493 aa24.5■■□□□ 1.51
RNF4-208ENST00000507247 CEP164Q9UPV0 1460 aa24.44■■□□□ 1.5
RNF4-208ENST00000507247 ABCC8Q09428 1581 aa24.4■■□□□ 1.5
RNF4-208ENST00000507247 CUX2O14529 1486 aa24.37■■□□□ 1.49
RNF4-208ENST00000507247 THOC2Q8NI27 1593 aaKnown RBP24.3■■□□□ 1.48
RNF4-208ENST00000507247 MRC2Q9UBG0 1479 aa24.29■■□□□ 1.48
RNF4-208ENST00000507247 URB2Q14146 1524 aaKnown RBP24.28■■□□□ 1.48
RNF4-208ENST00000507247 WRNQ14191 1432 aaPredicted RBP eCLIP24.27■■□□□ 1.482e-6■■■■■ 29.9
RNF4-208ENST00000507247 CUX1P39880 1505 aa24.27■■□□□ 1.48
RNF4-208ENST00000507247 SYNJ1O43426 1573 aa24.25■■□□□ 1.47
RNF4-208ENST00000507247 DNMBPQ6XZF7 1577 aa24.24■■□□□ 1.47
RNF4-208ENST00000507247 BIVM-ERCC5R4GMW8 1640 aa24.21■■□□□ 1.47
RNF4-208ENST00000507247 WDR62O43379 1518 aa24.21■■□□□ 1.47
RNF4-208ENST00000507247 TOPBP1Q92547 1522 aa24.21■■□□□ 1.47
RNF4-208ENST00000507247 DNAJC5Q9H3Z4 198 aa24.21■■□□□ 1.47
RNF4-208ENST00000507247 TOP2BQ02880 1626 aa24.2■■□□□ 1.46
RNF4-208ENST00000507247 CHIC1Q5VXU3 224 aa24.17■■□□□ 1.46
RNF4-208ENST00000507247 FGD5Q6ZNL6 1462 aa24.08■■□□□ 1.45
RNF4-208ENST00000507247 TRIM41Q8WV44 630 aa24.05■■□□□ 1.44
RNF4-208ENST00000507247 POLA1P09884 1462 aaPredicted RBP24.05■■□□□ 1.44
RNF4-208ENST00000507247 RAD54L2Q9Y4B4 1467 aa23.95■■□□□ 1.42
RNF4-208ENST00000507247 TARBP1Q13395 1621 aaKnown RBP23.93■■□□□ 1.42
RNF4-208ENST00000507247 SOGA1O94964 1423 aa23.93■■□□□ 1.42
RNF4-208ENST00000507247 WDR97A6NE52 1622 aa23.92■■□□□ 1.42
RNF4-208ENST00000507247 IFT140Q96RY7 1462 aa23.88■■□□□ 1.41
RNF4-208ENST00000507247 ABCA10Q8WWZ4 1543 aa23.85■■□□□ 1.41
RNF4-208ENST00000507247 ZNF608Q9ULD9 1512 aaPredicted RBP23.78■■□□□ 1.4
RNF4-208ENST00000507247 ABCA5Q8WWZ7 1642 aa23.75■■□□□ 1.39
RNF4-208ENST00000507247 RUSC2Q8N2Y8 1516 aa23.74■■□□□ 1.39
RNF4-208ENST00000507247 EIF4G3O43432 1585 aaKnown RBP23.74■■□□□ 1.39
RNF4-208ENST00000507247 TDRD9Q8NDG6 1382 aaKnown RBP23.73■■□□□ 1.39
RNF4-208ENST00000507247 AQRO60306 1485 aaKnown RBP eCLIP23.7■■□□□ 1.387e-8■■■■■ 35.3
RNF4-208ENST00000507247 KIF27Q86VH2 1401 aa23.69■■□□□ 1.38
RNF4-208ENST00000507247 PBRM1Q86U86 1689 aa23.67■■□□□ 1.38
RNF4-208ENST00000507247 GAPVD1Q14C86 1478 aa23.67■■□□□ 1.38
RNF4-208ENST00000507247 EEA1Q15075 1411 aa23.61■■□□□ 1.37
RNF4-208ENST00000507247 FAM9AQ8IZU1 332 aaPredicted RBP23.59■■□□□ 1.37
RNF4-208ENST00000507247 GRIN2BQ13224 1484 aa23.57■■□□□ 1.36
RNF4-208ENST00000507247 ERICH3Q5RHP9 1530 aa23.57■■□□□ 1.36
RNF4-208ENST00000507247 IGF1RP08069 1367 aa23.54■■□□□ 1.36
RNF4-208ENST00000507247 SNAPC4Q5SXM2 1469 aa23.5■■□□□ 1.35
RNF4-208ENST00000507247 CUL7Q14999 1698 aa23.49■■□□□ 1.35
RNF4-208ENST00000507247 CSRNP3Q8WYN3 585 aa23.49■■□□□ 1.35
RNF4-208ENST00000507247 ADAMTS12P58397 1594 aa23.48■■□□□ 1.35
RNF4-208ENST00000507247 MAGI1Q96QZ7 1491 aaPredicted RBP23.46■■□□□ 1.35
RNF4-208ENST00000507247 PRXQ9BXM0 1461 aa23.43■■□□□ 1.34
RNF4-208ENST00000507247 CARMIL1Q5VZK9 1371 aa23.42■■□□□ 1.34
RNF4-208ENST00000507247 FHAD1B1AJZ9 1412 aa23.4■■□□□ 1.34
RNF4-208ENST00000507247 KIF21BO75037 1637 aa23.4■■□□□ 1.34
RNF4-208ENST00000507247 SYNJ2O15056 1496 aa23.36■■□□□ 1.33
RNF4-208ENST00000507247 CHD1O14646 1710 aa23.36■■□□□ 1.33
RNF4-208ENST00000507247 RAPGEF2Q9Y4G8 1499 aa23.35■■□□□ 1.33
RNF4-208ENST00000507247 OSCARQ8IYS5 282 aa23.3■■□□□ 1.32
RNF4-208ENST00000507247 GRIN2AQ12879 1464 aa23.3■■□□□ 1.32
RNF4-208ENST00000507247 GOLGA3Q08378 1498 aa23.27■■□□□ 1.32
RNF4-208ENST00000507247 CHMP7Q8WUX9 453 aaPredicted RBP23.26■■□□□ 1.31
RNF4-208ENST00000507247 EHMT2Q96KQ7 1210 aa23.26■■□□□ 1.31
RNF4-208ENST00000507247 FBLN2P98095 1184 aa23.25■■□□□ 1.31
RNF4-208ENST00000507247 CEP170Q5SW79 1584 aa23.2■■□□□ 1.3
RNF4-208ENST00000507247 LOC105371045A0A1W2PR82 267 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms