RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 NISCHQ9Y2I1 1504 aa20.28■□□□□ 0.84
PDGFC-205ENST00000506880 CCDC180Q9P1Z9 1646 aa18.12■□□□□ 0.49
PDGFC-205ENST00000506880 AEBP2Q6ZN18 517 aaPredicted RBP17.38■□□□□ 0.37
PDGFC-205ENST00000506880 ABCC9O60706 1549 aa17.21■□□□□ 0.35
PDGFC-205ENST00000506880 MYO15BQ96JP2 1530 aa17.06■□□□□ 0.32
PDGFC-205ENST00000506880 DCAF1Q9Y4B6 1507 aa16.99■□□□□ 0.31
PDGFC-205ENST00000506880 NACADO15069 1562 aa16.97■□□□□ 0.31
PDGFC-205ENST00000506880 ZCCHC6Q5VYS8 1495 aaKnown RBP16.95■□□□□ 0.3
PDGFC-205ENST00000506880 RB1CC1Q8TDY2 1594 aa16.89■□□□□ 0.3
PDGFC-205ENST00000506880 DCAF8L2P0C7V8 631 aa16.57■□□□□ 0.24
PDGFC-205ENST00000506880 SHROOM4Q9ULL8 1493 aa16.44■□□□□ 0.22
PDGFC-205ENST00000506880 UNC13AQ9UPW8 1703 aa16.41■□□□□ 0.22
PDGFC-205ENST00000506880 CHIC1Q5VXU3 224 aa16.35■□□□□ 0.21
PDGFC-205ENST00000506880 SCRIBQ14160 1630 aa16.25■□□□□ 0.19
PDGFC-205ENST00000506880 BICRAQ9NZM4 1560 aa16.25■□□□□ 0.19
PDGFC-205ENST00000506880 PABPN1Q86U42 306 aaKnown RBP eCLIP16.02■□□□□ 0.16
PDGFC-205ENST00000506880 EIF4G1Q04637 1599 aaKnown RBP15.84■□□□□ 0.13
PDGFC-205ENST00000506880 BAZ1AQ9NRL2 1556 aaPredicted RBP15.78■□□□□ 0.12
PDGFC-205ENST00000506880 SMARCA4P51532 1647 aa15.69■□□□□ 0.1
PDGFC-205ENST00000506880 CC2D2AQ9P2K1 1620 aa15.69■□□□□ 0.1
PDGFC-205ENST00000506880 PEG3Q9GZU2 1588 aa15.67■□□□□ 0.1
PDGFC-205ENST00000506880 SMARCA2P51531 1590 aa15.66■□□□□ 0.1
PDGFC-205ENST00000506880 CECR2Q9BXF3 1484 aa15.61■□□□□ 0.09
PDGFC-205ENST00000506880 NCAPD3P42695 1498 aa15.6■□□□□ 0.09
PDGFC-205ENST00000506880 HMGXB3Q12766 1538 aa15.58■□□□□ 0.09
PDGFC-205ENST00000506880 ATAD2BQ9ULI0 1458 aa15.55■□□□□ 0.08
PDGFC-205ENST00000506880 DNAJC5BQ9UF47 199 aa15.54■□□□□ 0.08
PDGFC-205ENST00000506880 MROH2BQ7Z745 1585 aa15.52■□□□□ 0.07
PDGFC-205ENST00000506880 RSF1Q96T23 1441 aaPredicted RBP15.45■□□□□ 0.06
PDGFC-205ENST00000506880 BAZ1BQ9UIG0 1483 aaKnown RBP15.44■□□□□ 0.06
PDGFC-205ENST00000506880 WIZO95785 1651 aa15.35■□□□□ 0.05
PDGFC-205ENST00000506880 POTEDQ86YR6 584 aa15.34■□□□□ 0.05
PDGFC-205ENST00000506880 TOP2AP11388 1531 aaKnown RBP15.33■□□□□ 0.05
PDGFC-205ENST00000506880 LAMC3Q9Y6N6 1575 aa15.19■□□□□ 0.02
PDGFC-205ENST00000506880 CADPSQ9ULU8 1353 aa15.11■□□□□ 0.01
PDGFC-205ENST00000506880 PRDM2Q13029 1718 aa15.08■□□□□ 0
PDGFC-205ENST00000506880 CFTRP13569 1480 aa15.08■□□□□ 0
PDGFC-205ENST00000506880 PDS5BQ9NTI5 1447 aa15.06■□□□□ 0
PDGFC-205ENST00000506880 CCDC88BA6NC98 1476 aa15.06■□□□□ 0
PDGFC-205ENST00000506880 SUPT5HO00267 1087 aaKnown RBP14.97□□□□□ -0.01
PDGFC-205ENST00000506880 ERCC6Q03468 1493 aa14.93□□□□□ -0.02
PDGFC-205ENST00000506880 NESP48681 1621 aa14.92□□□□□ -0.02
PDGFC-205ENST00000506880 CEP164Q9UPV0 1460 aa14.89□□□□□ -0.03
PDGFC-205ENST00000506880 FANCD2Q9BXW9 1451 aa14.89□□□□□ -0.03
PDGFC-205ENST00000506880 ABCC8Q09428 1581 aa14.88□□□□□ -0.03
PDGFC-205ENST00000506880 CUX2O14529 1486 aa14.87□□□□□ -0.03
PDGFC-205ENST00000506880 KIF21AQ7Z4S6 1674 aa14.87□□□□□ -0.03
PDGFC-205ENST00000506880 MRC2Q9UBG0 1479 aa14.83□□□□□ -0.03
PDGFC-205ENST00000506880 THOC2Q8NI27 1593 aaKnown RBP14.83□□□□□ -0.04
PDGFC-205ENST00000506880 WDR62O43379 1518 aa14.81□□□□□ -0.04
PDGFC-205ENST00000506880 DNMBPQ6XZF7 1577 aa14.73□□□□□ -0.05
PDGFC-205ENST00000506880 SENP3Q9H4L4 574 aaPredicted RBP14.72□□□□□ -0.05
PDGFC-205ENST00000506880 URB2Q14146 1524 aaKnown RBP14.68□□□□□ -0.06
PDGFC-205ENST00000506880 TOPBP1Q92547 1522 aa14.67□□□□□ -0.06
PDGFC-205ENST00000506880 WDR97A6NE52 1622 aa14.66□□□□□ -0.06
PDGFC-205ENST00000506880 BIVM-ERCC5R4GMW8 1640 aa14.61□□□□□ -0.07
PDGFC-205ENST00000506880 IFT140Q96RY7 1462 aa14.61□□□□□ -0.07
PDGFC-205ENST00000506880 WRNQ14191 1432 aaPredicted RBP eCLIP14.6□□□□□ -0.07
PDGFC-205ENST00000506880 TOP2BQ02880 1626 aa14.6□□□□□ -0.07
PDGFC-205ENST00000506880 CUX1P39880 1505 aa14.58□□□□□ -0.08
PDGFC-205ENST00000506880 PHF23Q9BUL5 403 aaPredicted RBP14.57□□□□□ -0.08
PDGFC-205ENST00000506880 POLA1P09884 1462 aaPredicted RBP14.55□□□□□ -0.08
PDGFC-205ENST00000506880 TARBP1Q13395 1621 aaKnown RBP14.52□□□□□ -0.09
PDGFC-205ENST00000506880 FGD5Q6ZNL6 1462 aa14.5□□□□□ -0.09
PDGFC-205ENST00000506880 ABCA10Q8WWZ4 1543 aa14.49□□□□□ -0.09
PDGFC-205ENST00000506880 SOGA1O94964 1423 aa14.49□□□□□ -0.09
PDGFC-205ENST00000506880 SYNJ1O43426 1573 aa14.47□□□□□ -0.09
PDGFC-205ENST00000506880 DNAJC5Q9H3Z4 198 aa14.43□□□□□ -0.1
PDGFC-205ENST00000506880 EIF4G3O43432 1585 aaKnown RBP14.39□□□□□ -0.11
PDGFC-205ENST00000506880 ABCA5Q8WWZ7 1642 aa14.38□□□□□ -0.11
PDGFC-205ENST00000506880 GRIN2BQ13224 1484 aa14.37□□□□□ -0.11
PDGFC-205ENST00000506880 MAGI1Q96QZ7 1491 aaPredicted RBP14.37□□□□□ -0.11
PDGFC-205ENST00000506880 ERICH3Q5RHP9 1530 aa14.36□□□□□ -0.11
PDGFC-205ENST00000506880 RAD54L2Q9Y4B4 1467 aa14.36□□□□□ -0.11
PDGFC-205ENST00000506880 GAPVD1Q14C86 1478 aa14.35□□□□□ -0.11
PDGFC-205ENST00000506880 ZNF608Q9ULD9 1512 aaPredicted RBP14.34□□□□□ -0.11
PDGFC-205ENST00000506880 KIF27Q86VH2 1401 aa14.33□□□□□ -0.11
PDGFC-205ENST00000506880 PBRM1Q86U86 1689 aa14.32□□□□□ -0.12
PDGFC-205ENST00000506880 EEA1Q15075 1411 aa14.3□□□□□ -0.12
PDGFC-205ENST00000506880 TRIM41Q8WV44 630 aa14.29□□□□□ -0.12
PDGFC-205ENST00000506880 AQRO60306 1485 aaKnown RBP eCLIP14.28□□□□□ -0.12
PDGFC-205ENST00000506880 CUL7Q14999 1698 aa14.27□□□□□ -0.12
PDGFC-205ENST00000506880 TDRD9Q8NDG6 1382 aaKnown RBP14.27□□□□□ -0.12
PDGFC-205ENST00000506880 SYNJ2O15056 1496 aa14.25□□□□□ -0.13
PDGFC-205ENST00000506880 FHAD1B1AJZ9 1412 aa14.24□□□□□ -0.13
PDGFC-205ENST00000506880 ADAMTS12P58397 1594 aa14.22□□□□□ -0.13
PDGFC-205ENST00000506880 SNAPC4Q5SXM2 1469 aa14.21□□□□□ -0.13
PDGFC-205ENST00000506880 IGF1RP08069 1367 aa14.18□□□□□ -0.14
PDGFC-205ENST00000506880 OSCARQ8IYS5 282 aa14.17□□□□□ -0.14
PDGFC-205ENST00000506880 CHD1O14646 1710 aa14.17□□□□□ -0.14
PDGFC-205ENST00000506880 GRIN2AQ12879 1464 aa14.14□□□□□ -0.15
PDGFC-205ENST00000506880 CHMP7Q8WUX9 453 aaPredicted RBP14.14□□□□□ -0.15
PDGFC-205ENST00000506880 CARMIL1Q5VZK9 1371 aa14.11□□□□□ -0.15
PDGFC-205ENST00000506880 NUP160Q12769 1436 aa14.11□□□□□ -0.15
PDGFC-205ENST00000506880 RAPGEF2Q9Y4G8 1499 aa14.09□□□□□ -0.15
PDGFC-205ENST00000506880 PRXQ9BXM0 1461 aa14.08□□□□□ -0.16
PDGFC-205ENST00000506880 CLASP1Q7Z460 1538 aa14.08□□□□□ -0.16
PDGFC-205ENST00000506880 CSRNP3Q8WYN3 585 aa14.05□□□□□ -0.16
PDGFC-205ENST00000506880 KIAA0586Q9BVV6 1533 aa14.04□□□□□ -0.16
PDGFC-205ENST00000506880 KIF21BO75037 1637 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 165.7 ms