RNA–Protein interactions for RNA: ENST00000506437.1

ITGA3-208, Transcript of integrin subunit alpha 3, humanhuman

TSL 2

Gene ITGA3, Length 3,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGA3-208ENST00000506437 NISCHQ9Y2I1 1504 aa25.66■■□□□ 1.7
ITGA3-208ENST00000506437 CCDC180Q9P1Z9 1646 aa22.25■■□□□ 1.15
ITGA3-208ENST00000506437 DCAF8L2P0C7V8 631 aa21.93■■□□□ 1.1
ITGA3-208ENST00000506437 ABCC9O60706 1549 aa21.83■■□□□ 1.09
ITGA3-208ENST00000506437 ZCCHC6Q5VYS8 1495 aaKnown RBP21.45■■□□□ 1.03
ITGA3-208ENST00000506437 SHROOM4Q9ULL8 1493 aa21.34■■□□□ 1.01
ITGA3-208ENST00000506437 DCAF1Q9Y4B6 1507 aa20.92■□□□□ 0.94
ITGA3-208ENST00000506437 NACADO15069 1562 aa20.87■□□□□ 0.93
ITGA3-208ENST00000506437 SCRIBQ14160 1630 aa20.87■□□□□ 0.93
ITGA3-208ENST00000506437 RB1CC1Q8TDY2 1594 aa20.82■□□□□ 0.92
ITGA3-208ENST00000506437 PABPN1Q86U42 306 aaKnown RBP eCLIP20.71■□□□□ 0.91
ITGA3-208ENST00000506437 MYO15BQ96JP2 1530 aa20.71■□□□□ 0.91
ITGA3-208ENST00000506437 UNC13AQ9UPW8 1703 aa20.51■□□□□ 0.87
ITGA3-208ENST00000506437 SUPT5HO00267 1087 aaKnown RBP20.38■□□□□ 0.85
ITGA3-208ENST00000506437 BICRAQ9NZM4 1560 aa20.3■□□□□ 0.84
ITGA3-208ENST00000506437 CECR2Q9BXF3 1484 aa20.2■□□□□ 0.82
ITGA3-208ENST00000506437 MROH2BQ7Z745 1585 aa19.96■□□□□ 0.79
ITGA3-208ENST00000506437 RSF1Q96T23 1441 aaPredicted RBP19.91■□□□□ 0.78
ITGA3-208ENST00000506437 WIZO95785 1651 aa19.81■□□□□ 0.76
ITGA3-208ENST00000506437 SMARCA4P51532 1647 aa19.78■□□□□ 0.76
ITGA3-208ENST00000506437 BAZ1AQ9NRL2 1556 aaPredicted RBP19.78■□□□□ 0.76
ITGA3-208ENST00000506437 EIF4G1Q04637 1599 aaKnown RBP19.73■□□□□ 0.75
ITGA3-208ENST00000506437 DNAJC5BQ9UF47 199 aa19.65■□□□□ 0.74
ITGA3-208ENST00000506437 ATAD2BQ9ULI0 1458 aa19.57■□□□□ 0.72
ITGA3-208ENST00000506437 CC2D2AQ9P2K1 1620 aa19.56■□□□□ 0.72
ITGA3-208ENST00000506437 BAZ1BQ9UIG0 1483 aaKnown RBP19.48■□□□□ 0.71
ITGA3-208ENST00000506437 SMARCA2P51531 1590 aa19.41■□□□□ 0.7
ITGA3-208ENST00000506437 TOP2AP11388 1531 aaKnown RBP19.39■□□□□ 0.69
ITGA3-208ENST00000506437 PEG3Q9GZU2 1588 aa19.36■□□□□ 0.69
ITGA3-208ENST00000506437 CCDC88BA6NC98 1476 aa19.35■□□□□ 0.69
ITGA3-208ENST00000506437 NCAPD3P42695 1498 aa19.34■□□□□ 0.69
ITGA3-208ENST00000506437 HMGXB3Q12766 1538 aa19.21■□□□□ 0.67
ITGA3-208ENST00000506437 CHIC1Q5VXU3 224 aa19.13■□□□□ 0.65
ITGA3-208ENST00000506437 NESP48681 1621 aa19.09■□□□□ 0.65
ITGA3-208ENST00000506437 ABCC8Q09428 1581 aa19.01■□□□□ 0.63
ITGA3-208ENST00000506437 PELP1Q8IZL8 1130 aaKnown RBP19.01■□□□□ 0.63
ITGA3-208ENST00000506437 TRIM41Q8WV44 630 aa18.97■□□□□ 0.63
ITGA3-208ENST00000506437 CADPSQ9ULU8 1353 aa18.94■□□□□ 0.62
ITGA3-208ENST00000506437 FAM9AQ8IZU1 332 aaPredicted RBP18.92■□□□□ 0.62
ITGA3-208ENST00000506437 EHMT2Q96KQ7 1210 aa18.92■□□□□ 0.62
ITGA3-208ENST00000506437 CFTRP13569 1480 aa18.88■□□□□ 0.61
ITGA3-208ENST00000506437 FANCD2Q9BXW9 1451 aa18.77■□□□□ 0.6
ITGA3-208ENST00000506437 WRNQ14191 1432 aaPredicted RBP eCLIP18.75■□□□□ 0.59
ITGA3-208ENST00000506437 SYNJ1O43426 1573 aa18.71■□□□□ 0.59
ITGA3-208ENST00000506437 HRCP23327 699 aa18.69■□□□□ 0.58
ITGA3-208ENST00000506437 LAMC3Q9Y6N6 1575 aa18.69■□□□□ 0.58
ITGA3-208ENST00000506437 KIF21AQ7Z4S6 1674 aa18.68■□□□□ 0.58
ITGA3-208ENST00000506437 ERCC6Q03468 1493 aa18.66■□□□□ 0.58
ITGA3-208ENST00000506437 PDS5BQ9NTI5 1447 aa18.65■□□□□ 0.58
ITGA3-208ENST00000506437 LOC105371045A0A1W2PR82 267 aa18.65■□□□□ 0.58
ITGA3-208ENST00000506437 CUX1P39880 1505 aa18.64■□□□□ 0.57
ITGA3-208ENST00000506437 PPARGC1BQ86YN6 1023 aaKnown RBP18.64■□□□□ 0.57
ITGA3-208ENST00000506437 CEP164Q9UPV0 1460 aa18.63■□□□□ 0.57
ITGA3-208ENST00000506437 PRDM2Q13029 1718 aa18.6■□□□□ 0.57
ITGA3-208ENST00000506437 SOGA1O94964 1423 aa18.6■□□□□ 0.57
ITGA3-208ENST00000506437 RUSC2Q8N2Y8 1516 aa18.59■□□□□ 0.57
ITGA3-208ENST00000506437 URB2Q14146 1524 aaKnown RBP18.56■□□□□ 0.56
ITGA3-208ENST00000506437 RAD54L2Q9Y4B4 1467 aa18.52■□□□□ 0.56
ITGA3-208ENST00000506437 TOPBP1Q92547 1522 aa18.51■□□□□ 0.55
ITGA3-208ENST00000506437 FGD5Q6ZNL6 1462 aa18.5■□□□□ 0.55
ITGA3-208ENST00000506437 TOP2BQ02880 1626 aa18.5■□□□□ 0.55
ITGA3-208ENST00000506437 POLA1P09884 1462 aaPredicted RBP18.43■□□□□ 0.54
ITGA3-208ENST00000506437 BIVM-ERCC5R4GMW8 1640 aa18.42■□□□□ 0.54
ITGA3-208ENST00000506437 MRC2Q9UBG0 1479 aa18.42■□□□□ 0.54
ITGA3-208ENST00000506437 DNMBPQ6XZF7 1577 aa18.42■□□□□ 0.54
ITGA3-208ENST00000506437 TDRD9Q8NDG6 1382 aaKnown RBP18.42■□□□□ 0.54
ITGA3-208ENST00000506437 RANGAP1P46060 587 aaPredicted RBP18.4■□□□□ 0.54
ITGA3-208ENST00000506437 MYT1Q01538 1121 aa18.39■□□□□ 0.54
ITGA3-208ENST00000506437 CUX2O14529 1486 aa18.38■□□□□ 0.53
ITGA3-208ENST00000506437 CSRNP3Q8WYN3 585 aa18.35■□□□□ 0.53
ITGA3-208ENST00000506437 THOC2Q8NI27 1593 aaKnown RBP18.33■□□□□ 0.52
ITGA3-208ENST00000506437 SCAF1Q9H7N4 1312 aaKnown RBP18.32■□□□□ 0.52
ITGA3-208ENST00000506437 AQRO60306 1485 aaKnown RBP eCLIP18.31■□□□□ 0.52
ITGA3-208ENST00000506437 ZNF608Q9ULD9 1512 aaPredicted RBP18.3■□□□□ 0.52
ITGA3-208ENST00000506437 UBTFP17480 764 aaKnown RBP18.28■□□□□ 0.52
ITGA3-208ENST00000506437 WDR62O43379 1518 aa18.28■□□□□ 0.52
ITGA3-208ENST00000506437 KIF27Q86VH2 1401 aa18.25■□□□□ 0.51
ITGA3-208ENST00000506437 FBLN2P98095 1184 aa18.2■□□□□ 0.5
ITGA3-208ENST00000506437 IGF1RP08069 1367 aa18.19■□□□□ 0.5
ITGA3-208ENST00000506437 TARBP1Q13395 1621 aaKnown RBP18.19■□□□□ 0.5
ITGA3-208ENST00000506437 ABCA10Q8WWZ4 1543 aa18.18■□□□□ 0.5
ITGA3-208ENST00000506437 RAPGEF2Q9Y4G8 1499 aa18.17■□□□□ 0.5
ITGA3-208ENST00000506437 GAPVD1Q14C86 1478 aa18.15■□□□□ 0.5
ITGA3-208ENST00000506437 PCGF6Q9BYE7 350 aa18.12■□□□□ 0.49
ITGA3-208ENST00000506437 IFT140Q96RY7 1462 aa18.12■□□□□ 0.49
ITGA3-208ENST00000506437 CARMIL1Q5VZK9 1371 aa18.11■□□□□ 0.49
ITGA3-208ENST00000506437 EEA1Q15075 1411 aa18.09■□□□□ 0.49
ITGA3-208ENST00000506437 WDR97A6NE52 1622 aa18.09■□□□□ 0.49
ITGA3-208ENST00000506437 EIF4G3O43432 1585 aaKnown RBP18.07■□□□□ 0.48
ITGA3-208ENST00000506437 ABCA5Q8WWZ7 1642 aa18.05■□□□□ 0.48
ITGA3-208ENST00000506437 PRXQ9BXM0 1461 aa18.02■□□□□ 0.48
ITGA3-208ENST00000506437 P3H3Q8IVL6 736 aa18.02■□□□□ 0.48
ITGA3-208ENST00000506437 TTBK1Q5TCY1 1321 aaPredicted RBP18.01■□□□□ 0.47
ITGA3-208ENST00000506437 GOLGA3Q08378 1498 aa18.01■□□□□ 0.47
ITGA3-208ENST00000506437 SNAPC4Q5SXM2 1469 aa18.01■□□□□ 0.47
ITGA3-208ENST00000506437 CHMP7Q8WUX9 453 aaPredicted RBP18■□□□□ 0.47
ITGA3-208ENST00000506437 PBRM1Q86U86 1689 aa17.99■□□□□ 0.47
ITGA3-208ENST00000506437 GRIN2BQ13224 1484 aa17.98■□□□□ 0.47
ITGA3-208ENST00000506437 KIF21BO75037 1637 aa17.94■□□□□ 0.46
ITGA3-208ENST00000506437 ERICH3Q5RHP9 1530 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms