RNA–Protein interactions for RNA: ENST00000505937.2

PCDH1-205, Transcript of protocadherin 1, humanhuman

TSL 5

Gene PCDH1, Length 825 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-205ENST00000505937 NISCHQ9Y2I1 1504 aa37.47■■■■□ 3.59
PCDH1-205ENST00000505937 CCDC180Q9P1Z9 1646 aa33.3■■■□□ 2.92
PCDH1-205ENST00000505937 ABCC9O60706 1549 aa32.7■■■□□ 2.83
PCDH1-205ENST00000505937 DCAF8L2P0C7V8 631 aa31.46■■■□□ 2.63
PCDH1-205ENST00000505937 RB1CC1Q8TDY2 1594 aa31.43■■■□□ 2.62
PCDH1-205ENST00000505937 NACADO15069 1562 aa31.39■■■□□ 2.61
PCDH1-205ENST00000505937 ZCCHC6Q5VYS8 1495 aaKnown RBP31.2■■■□□ 2.58
PCDH1-205ENST00000505937 MYO15BQ96JP2 1530 aa31.17■■■□□ 2.58
PCDH1-205ENST00000505937 DCAF1Q9Y4B6 1507 aa31■■■□□ 2.55
PCDH1-205ENST00000505937 PABPN1Q86U42 306 aaKnown RBP eCLIP30.57■■■□□ 2.48
PCDH1-205ENST00000505937 UNC13AQ9UPW8 1703 aa30.54■■■□□ 2.48
PCDH1-205ENST00000505937 SCRIBQ14160 1630 aa30.4■■■□□ 2.46
PCDH1-205ENST00000505937 BICRAQ9NZM4 1560 aa30.38■■■□□ 2.45
PCDH1-205ENST00000505937 SHROOM4Q9ULL8 1493 aa30.19■■■□□ 2.42
PCDH1-205ENST00000505937 DNAJC5BQ9UF47 199 aa30.01■■■□□ 2.39
PCDH1-205ENST00000505937 EIF4G1Q04637 1599 aaKnown RBP29.64■■■□□ 2.34
PCDH1-205ENST00000505937 CC2D2AQ9P2K1 1620 aa29.53■■■□□ 2.32
PCDH1-205ENST00000505937 CECR2Q9BXF3 1484 aa29.41■■■□□ 2.3
PCDH1-205ENST00000505937 BAZ1AQ9NRL2 1556 aaPredicted RBP29.08■■■□□ 2.25
PCDH1-205ENST00000505937 SMARCA4P51532 1647 aa29.06■■■□□ 2.24
PCDH1-205ENST00000505937 NCAPD3P42695 1498 aa28.96■■■□□ 2.23
PCDH1-205ENST00000505937 ATAD2BQ9ULI0 1458 aa28.96■■■□□ 2.23
PCDH1-205ENST00000505937 SMARCA2P51531 1590 aa28.95■■■□□ 2.22
PCDH1-205ENST00000505937 MROH2BQ7Z745 1585 aa28.85■■■□□ 2.21
PCDH1-205ENST00000505937 HMGXB3Q12766 1538 aa28.8■■■□□ 2.2
PCDH1-205ENST00000505937 PEG3Q9GZU2 1588 aa28.77■■■□□ 2.2
PCDH1-205ENST00000505937 BAZ1BQ9UIG0 1483 aaKnown RBP28.75■■■□□ 2.19
PCDH1-205ENST00000505937 RSF1Q96T23 1441 aaPredicted RBP28.53■■■□□ 2.16
PCDH1-205ENST00000505937 WIZO95785 1651 aa28.5■■■□□ 2.15
PCDH1-205ENST00000505937 TOP2AP11388 1531 aaKnown RBP28.26■■■□□ 2.11
PCDH1-205ENST00000505937 ERCC6Q03468 1493 aa28.26■■■□□ 2.11
PCDH1-205ENST00000505937 NESP48681 1621 aa28.23■■■□□ 2.11
PCDH1-205ENST00000505937 LAMC3Q9Y6N6 1575 aa28.2■■■□□ 2.1
PCDH1-205ENST00000505937 CADPSQ9ULU8 1353 aa28.14■■■□□ 2.1
PCDH1-205ENST00000505937 PDS5BQ9NTI5 1447 aa28.09■■■□□ 2.09
PCDH1-205ENST00000505937 CUX2O14529 1486 aa27.94■■■□□ 2.06
PCDH1-205ENST00000505937 CCDC88BA6NC98 1476 aa27.93■■■□□ 2.06
PCDH1-205ENST00000505937 CFTRP13569 1480 aa27.93■■■□□ 2.06
PCDH1-205ENST00000505937 SUPT5HO00267 1087 aaKnown RBP27.85■■■□□ 2.05
PCDH1-205ENST00000505937 KIF21AQ7Z4S6 1674 aa27.84■■■□□ 2.05
PCDH1-205ENST00000505937 FANCD2Q9BXW9 1451 aa27.81■■■□□ 2.04
PCDH1-205ENST00000505937 THOC2Q8NI27 1593 aaKnown RBP27.79■■■□□ 2.04
PCDH1-205ENST00000505937 CEP164Q9UPV0 1460 aa27.79■■■□□ 2.04
PCDH1-205ENST00000505937 MRC2Q9UBG0 1479 aa27.75■■■□□ 2.03
PCDH1-205ENST00000505937 WDR62O43379 1518 aa27.62■■■□□ 2.01
PCDH1-205ENST00000505937 PRDM2Q13029 1718 aa27.61■■■□□ 2.01
PCDH1-205ENST00000505937 URB2Q14146 1524 aaKnown RBP27.48■■□□□ 1.99
PCDH1-205ENST00000505937 ABCC8Q09428 1581 aa27.39■■□□□ 1.98
PCDH1-205ENST00000505937 TOPBP1Q92547 1522 aa27.33■■□□□ 1.97
PCDH1-205ENST00000505937 DNMBPQ6XZF7 1577 aa27.29■■□□□ 1.96
PCDH1-205ENST00000505937 IFT140Q96RY7 1462 aa27.21■■□□□ 1.95
PCDH1-205ENST00000505937 DNAJC5Q9H3Z4 198 aa27.16■■□□□ 1.94
PCDH1-205ENST00000505937 POLA1P09884 1462 aaPredicted RBP27.09■■□□□ 1.93
PCDH1-205ENST00000505937 CUX1P39880 1505 aa27.07■■□□□ 1.92
PCDH1-205ENST00000505937 SOGA1O94964 1423 aa27.03■■□□□ 1.92
PCDH1-205ENST00000505937 FGD5Q6ZNL6 1462 aa27.03■■□□□ 1.92
PCDH1-205ENST00000505937 ZNF608Q9ULD9 1512 aaPredicted RBP27.03■■□□□ 1.92
PCDH1-205ENST00000505937 TARBP1Q13395 1621 aaKnown RBP26.98■■□□□ 1.91
PCDH1-205ENST00000505937 RAD54L2Q9Y4B4 1467 aa26.97■■□□□ 1.91
PCDH1-205ENST00000505937 WRNQ14191 1432 aaPredicted RBP eCLIP26.95■■□□□ 1.9
PCDH1-205ENST00000505937 AQRO60306 1485 aaKnown RBP eCLIP26.91■■□□□ 1.9
PCDH1-205ENST00000505937 EIF4G3O43432 1585 aaKnown RBP26.91■■□□□ 1.9
PCDH1-205ENST00000505937 TDRD9Q8NDG6 1382 aaKnown RBP26.87■■□□□ 1.89
PCDH1-205ENST00000505937 TOP2BQ02880 1626 aa26.83■■□□□ 1.89
PCDH1-205ENST00000505937 OSCARQ8IYS5 282 aa26.83■■□□□ 1.89
PCDH1-205ENST00000505937 WDR97A6NE52 1622 aa26.83■■□□□ 1.88
PCDH1-205ENST00000505937 SYNJ1O43426 1573 aa26.8■■□□□ 1.88
PCDH1-205ENST00000505937 BIVM-ERCC5R4GMW8 1640 aa26.79■■□□□ 1.88
PCDH1-205ENST00000505937 ABCA10Q8WWZ4 1543 aa26.77■■□□□ 1.88
PCDH1-205ENST00000505937 GRIN2BQ13224 1484 aa26.72■■□□□ 1.87
PCDH1-205ENST00000505937 GAPVD1Q14C86 1478 aa26.7■■□□□ 1.87
PCDH1-205ENST00000505937 FBLN2P98095 1184 aa26.69■■□□□ 1.86
PCDH1-205ENST00000505937 SNAPC4Q5SXM2 1469 aa26.66■■□□□ 1.86
PCDH1-205ENST00000505937 MAGI1Q96QZ7 1491 aaPredicted RBP26.65■■□□□ 1.86
PCDH1-205ENST00000505937 CHMP7Q8WUX9 453 aaPredicted RBP26.61■■□□□ 1.85
PCDH1-205ENST00000505937 ABCA5Q8WWZ7 1642 aa26.61■■□□□ 1.85
PCDH1-205ENST00000505937 PBRM1Q86U86 1689 aa26.55■■□□□ 1.84
PCDH1-205ENST00000505937 CHD1O14646 1710 aa26.54■■□□□ 1.84
PCDH1-205ENST00000505937 SYNJ2O15056 1496 aa26.54■■□□□ 1.84
PCDH1-205ENST00000505937 ERICH3Q5RHP9 1530 aa26.45■■□□□ 1.83
PCDH1-205ENST00000505937 KIF27Q86VH2 1401 aa26.43■■□□□ 1.82
PCDH1-205ENST00000505937 FHAD1B1AJZ9 1412 aa26.41■■□□□ 1.82
PCDH1-205ENST00000505937 ADAMTS12P58397 1594 aa26.39■■□□□ 1.82
PCDH1-205ENST00000505937 GRIN2AQ12879 1464 aa26.35■■□□□ 1.81
PCDH1-205ENST00000505937 TRIM41Q8WV44 630 aa26.34■■□□□ 1.81
PCDH1-205ENST00000505937 ARHGEF11O15085 1522 aa26.31■■□□□ 1.8
PCDH1-205ENST00000505937 CLASP1Q7Z460 1538 aa26.29■■□□□ 1.8
PCDH1-205ENST00000505937 IGF1RP08069 1367 aa26.28■■□□□ 1.8
PCDH1-205ENST00000505937 RIMBP3CA6NJZ7 1639 aa26.27■■□□□ 1.8
PCDH1-205ENST00000505937 RIMBP3BA6NNM3 1639 aa26.27■■□□□ 1.8
PCDH1-205ENST00000505937 RIMBP3Q9UFD9 1639 aa26.27■■□□□ 1.8
PCDH1-205ENST00000505937 NUP160Q12769 1436 aa26.22■■□□□ 1.79
PCDH1-205ENST00000505937 CUL7Q14999 1698 aa26.18■■□□□ 1.78
PCDH1-205ENST00000505937 CEP170Q5SW79 1584 aa26.16■■□□□ 1.78
PCDH1-205ENST00000505937 CARMIL1Q5VZK9 1371 aa26.15■■□□□ 1.78
PCDH1-205ENST00000505937 CYB5RLQ6IPT4 315 aa26.14■■□□□ 1.78
PCDH1-205ENST00000505937 ARAP1Q96P48 1450 aa26.08■■□□□ 1.77
PCDH1-205ENST00000505937 RUSC2Q8N2Y8 1516 aa26.04■■□□□ 1.76
PCDH1-205ENST00000505937 JPH4Q96JJ6 628 aa26.02■■□□□ 1.76
PCDH1-205ENST00000505937 KIAA0586Q9BVV6 1533 aa25.98■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 902.4 ms