RNA–Protein interactions for RNA: ENST00000505612.1

ITGA3-206, Transcript of integrin subunit alpha 3, humanhuman

TSL 4

Gene ITGA3, Length 576 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGA3-206ENST00000505612 NISCHQ9Y2I1 1504 aa31.61■■■□□ 2.65
ITGA3-206ENST00000505612 CCDC180Q9P1Z9 1646 aa28.01■■■□□ 2.07
ITGA3-206ENST00000505612 ABCC9O60706 1549 aa27.46■■□□□ 1.99
ITGA3-206ENST00000505612 DCAF8L2P0C7V8 631 aa26.57■■□□□ 1.84
ITGA3-206ENST00000505612 NACADO15069 1562 aa26.46■■□□□ 1.83
ITGA3-206ENST00000505612 RB1CC1Q8TDY2 1594 aa26.46■■□□□ 1.83
ITGA3-206ENST00000505612 MYO15BQ96JP2 1530 aa26.35■■□□□ 1.81
ITGA3-206ENST00000505612 ZCCHC6Q5VYS8 1495 aaKnown RBP26.29■■□□□ 1.8
ITGA3-206ENST00000505612 DCAF1Q9Y4B6 1507 aa26.21■■□□□ 1.79
ITGA3-206ENST00000505612 PABPN1Q86U42 306 aaKnown RBP eCLIP25.74■■□□□ 1.71
ITGA3-206ENST00000505612 UNC13AQ9UPW8 1703 aa25.54■■□□□ 1.68
ITGA3-206ENST00000505612 BICRAQ9NZM4 1560 aa25.52■■□□□ 1.68
ITGA3-206ENST00000505612 SCRIBQ14160 1630 aa25.52■■□□□ 1.68
ITGA3-206ENST00000505612 SHROOM4Q9ULL8 1493 aa25.48■■□□□ 1.67
ITGA3-206ENST00000505612 DNAJC5BQ9UF47 199 aa25.22■■□□□ 1.63
ITGA3-206ENST00000505612 EIF4G1Q04637 1599 aaKnown RBP24.92■■□□□ 1.58
ITGA3-206ENST00000505612 CC2D2AQ9P2K1 1620 aa24.79■■□□□ 1.56
ITGA3-206ENST00000505612 CECR2Q9BXF3 1484 aa24.73■■□□□ 1.55
ITGA3-206ENST00000505612 BAZ1AQ9NRL2 1556 aaPredicted RBP24.52■■□□□ 1.52
ITGA3-206ENST00000505612 NCAPD3P42695 1498 aa24.46■■□□□ 1.51
ITGA3-206ENST00000505612 SMARCA4P51532 1647 aa24.44■■□□□ 1.5
ITGA3-206ENST00000505612 ATAD2BQ9ULI0 1458 aa24.41■■□□□ 1.5
ITGA3-206ENST00000505612 SMARCA2P51531 1590 aa24.41■■□□□ 1.5
ITGA3-206ENST00000505612 MROH2BQ7Z745 1585 aa24.29■■□□□ 1.48
ITGA3-206ENST00000505612 PEG3Q9GZU2 1588 aa24.26■■□□□ 1.47
ITGA3-206ENST00000505612 HMGXB3Q12766 1538 aa24.25■■□□□ 1.47
ITGA3-206ENST00000505612 BAZ1BQ9UIG0 1483 aaKnown RBP24.22■■□□□ 1.47
ITGA3-206ENST00000505612 RSF1Q96T23 1441 aaPredicted RBP24.11■■□□□ 1.45
ITGA3-206ENST00000505612 WIZO95785 1651 aa23.95■■□□□ 1.42
ITGA3-206ENST00000505612 TOP2AP11388 1531 aaKnown RBP23.8■■□□□ 1.4
ITGA3-206ENST00000505612 CADPSQ9ULU8 1353 aa23.78■■□□□ 1.4
ITGA3-206ENST00000505612 ERCC6Q03468 1493 aa23.76■■□□□ 1.39
ITGA3-206ENST00000505612 LAMC3Q9Y6N6 1575 aa23.74■■□□□ 1.39
ITGA3-206ENST00000505612 PDS5BQ9NTI5 1447 aa23.72■■□□□ 1.39
ITGA3-206ENST00000505612 NESP48681 1621 aa23.7■■□□□ 1.39
ITGA3-206ENST00000505612 CCDC88BA6NC98 1476 aa23.57■■□□□ 1.36
ITGA3-206ENST00000505612 CFTRP13569 1480 aa23.57■■□□□ 1.36
ITGA3-206ENST00000505612 SUPT5HO00267 1087 aaKnown RBP23.57■■□□□ 1.36
ITGA3-206ENST00000505612 CUX2O14529 1486 aa23.51■■□□□ 1.35
ITGA3-206ENST00000505612 FANCD2Q9BXW9 1451 aa23.43■■□□□ 1.34
ITGA3-206ENST00000505612 CEP164Q9UPV0 1460 aa23.4■■□□□ 1.34
ITGA3-206ENST00000505612 MRC2Q9UBG0 1479 aa23.36■■□□□ 1.33
ITGA3-206ENST00000505612 KIF21AQ7Z4S6 1674 aa23.31■■□□□ 1.32
ITGA3-206ENST00000505612 THOC2Q8NI27 1593 aaKnown RBP23.29■■□□□ 1.32
ITGA3-206ENST00000505612 WDR62O43379 1518 aa23.22■■□□□ 1.31
ITGA3-206ENST00000505612 ABCC8Q09428 1581 aa23.18■■□□□ 1.3
ITGA3-206ENST00000505612 PRDM2Q13029 1718 aa23.13■■□□□ 1.29
ITGA3-206ENST00000505612 URB2Q14146 1524 aaKnown RBP23.11■■□□□ 1.29
ITGA3-206ENST00000505612 TOPBP1Q92547 1522 aa23.01■■□□□ 1.27
ITGA3-206ENST00000505612 DNMBPQ6XZF7 1577 aa22.97■■□□□ 1.27
ITGA3-206ENST00000505612 IFT140Q96RY7 1462 aa22.95■■□□□ 1.26
ITGA3-206ENST00000505612 DNAJC5Q9H3Z4 198 aa22.87■■□□□ 1.25
ITGA3-206ENST00000505612 SOGA1O94964 1423 aa22.82■■□□□ 1.24
ITGA3-206ENST00000505612 POLA1P09884 1462 aaPredicted RBP22.81■■□□□ 1.24
ITGA3-206ENST00000505612 CUX1P39880 1505 aa22.79■■□□□ 1.24
ITGA3-206ENST00000505612 WRNQ14191 1432 aaPredicted RBP eCLIP22.76■■□□□ 1.23
ITGA3-206ENST00000505612 FGD5Q6ZNL6 1462 aa22.75■■□□□ 1.23
ITGA3-206ENST00000505612 ZNF608Q9ULD9 1512 aaPredicted RBP22.72■■□□□ 1.23
ITGA3-206ENST00000505612 RAD54L2Q9Y4B4 1467 aa22.7■■□□□ 1.22
ITGA3-206ENST00000505612 TARBP1Q13395 1621 aaKnown RBP22.69■■□□□ 1.22
ITGA3-206ENST00000505612 CHIC1Q5VXU3 224 aa22.68■■□□□ 1.22
ITGA3-206ENST00000505612 OSCARQ8IYS5 282 aa22.67■■□□□ 1.22
ITGA3-206ENST00000505612 AQRO60306 1485 aaKnown RBP eCLIP22.66■■□□□ 1.22
ITGA3-206ENST00000505612 TDRD9Q8NDG6 1382 aaKnown RBP22.66■■□□□ 1.22
ITGA3-206ENST00000505612 WDR97A6NE52 1622 aa22.62■■□□□ 1.21
ITGA3-206ENST00000505612 TOP2BQ02880 1626 aa22.61■■□□□ 1.21
ITGA3-206ENST00000505612 ABCA10Q8WWZ4 1543 aa22.58■■□□□ 1.21
ITGA3-206ENST00000505612 EIF4G3O43432 1585 aaKnown RBP22.57■■□□□ 1.2
ITGA3-206ENST00000505612 BIVM-ERCC5R4GMW8 1640 aa22.55■■□□□ 1.2
ITGA3-206ENST00000505612 GRIN2BQ13224 1484 aa22.54■■□□□ 1.2
ITGA3-206ENST00000505612 SYNJ1O43426 1573 aa22.54■■□□□ 1.2
ITGA3-206ENST00000505612 GAPVD1Q14C86 1478 aa22.53■■□□□ 1.2
ITGA3-206ENST00000505612 FBLN2P98095 1184 aa22.51■■□□□ 1.19
ITGA3-206ENST00000505612 CHMP7Q8WUX9 453 aaPredicted RBP22.49■■□□□ 1.19
ITGA3-206ENST00000505612 MAGI1Q96QZ7 1491 aaPredicted RBP22.47■■□□□ 1.19
ITGA3-206ENST00000505612 SNAPC4Q5SXM2 1469 aa22.41■■□□□ 1.18
ITGA3-206ENST00000505612 SYNJ2O15056 1496 aa22.37■■□□□ 1.17
ITGA3-206ENST00000505612 ABCA5Q8WWZ7 1642 aa22.36■■□□□ 1.17
ITGA3-206ENST00000505612 TRIM41Q8WV44 630 aa22.36■■□□□ 1.17
ITGA3-206ENST00000505612 KIF27Q86VH2 1401 aa22.35■■□□□ 1.17
ITGA3-206ENST00000505612 ERICH3Q5RHP9 1530 aa22.32■■□□□ 1.16
ITGA3-206ENST00000505612 FHAD1B1AJZ9 1412 aa22.31■■□□□ 1.16
ITGA3-206ENST00000505612 IGF1RP08069 1367 aa22.25■■□□□ 1.15
ITGA3-206ENST00000505612 PBRM1Q86U86 1689 aa22.24■■□□□ 1.15
ITGA3-206ENST00000505612 CHD1O14646 1710 aa22.2■■□□□ 1.14
ITGA3-206ENST00000505612 GRIN2AQ12879 1464 aa22.2■■□□□ 1.14
ITGA3-206ENST00000505612 ADAMTS12P58397 1594 aa22.16■■□□□ 1.14
ITGA3-206ENST00000505612 CARMIL1Q5VZK9 1371 aa22.12■■□□□ 1.13
ITGA3-206ENST00000505612 NUP160Q12769 1436 aa22.11■■□□□ 1.13
ITGA3-206ENST00000505612 CLASP1Q7Z460 1538 aa22.09■■□□□ 1.13
ITGA3-206ENST00000505612 ARHGEF11O15085 1522 aa22.08■■□□□ 1.13
ITGA3-206ENST00000505612 CUL7Q14999 1698 aa22.04■■□□□ 1.12
ITGA3-206ENST00000505612 CYB5RLQ6IPT4 315 aa22.04■■□□□ 1.12
ITGA3-206ENST00000505612 JPH4Q96JJ6 628 aa22.02■■□□□ 1.12
ITGA3-206ENST00000505612 RIMBP3CA6NJZ7 1639 aa22.01■■□□□ 1.11
ITGA3-206ENST00000505612 RIMBP3BA6NNM3 1639 aa22.01■■□□□ 1.11
ITGA3-206ENST00000505612 RIMBP3Q9UFD9 1639 aa22.01■■□□□ 1.11
ITGA3-206ENST00000505612 CEP170Q5SW79 1584 aa21.97■■□□□ 1.11
ITGA3-206ENST00000505612 EEA1Q15075 1411 aa21.97■■□□□ 1.11
ITGA3-206ENST00000505612 CSRNP3Q8WYN3 585 aa21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms