RNA–Protein interactions for RNA: ENST00000505199.5

SNCA-208, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 411 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-208ENST00000505199 NISCHQ9Y2I1 1504 aa29.93■■■□□ 2.38
SNCA-208ENST00000505199 CCDC180Q9P1Z9 1646 aa26.61■■□□□ 1.85
SNCA-208ENST00000505199 ABCC9O60706 1549 aa25.54■■□□□ 1.68
SNCA-208ENST00000505199 ZCCHC6Q5VYS8 1495 aaKnown RBP25■■□□□ 1.59
SNCA-208ENST00000505199 MYO15BQ96JP2 1530 aa25■■□□□ 1.59
SNCA-208ENST00000505199 NACADO15069 1562 aa24.94■■□□□ 1.58
SNCA-208ENST00000505199 DCAF1Q9Y4B6 1507 aa24.92■■□□□ 1.58
SNCA-208ENST00000505199 RB1CC1Q8TDY2 1594 aa24.87■■□□□ 1.57
SNCA-208ENST00000505199 DCAF8L2P0C7V8 631 aa24.66■■□□□ 1.54
SNCA-208ENST00000505199 UNC13AQ9UPW8 1703 aa24.21■■□□□ 1.47
SNCA-208ENST00000505199 SCRIBQ14160 1630 aa24.06■■□□□ 1.44
SNCA-208ENST00000505199 SHROOM4Q9ULL8 1493 aa24.06■■□□□ 1.44
SNCA-208ENST00000505199 BICRAQ9NZM4 1560 aa24.03■■□□□ 1.44
SNCA-208ENST00000505199 PABPN1Q86U42 306 aaKnown RBP eCLIP23.84■■□□□ 1.41
SNCA-208ENST00000505199 EIF4G1Q04637 1599 aaKnown RBP23.4■■□□□ 1.34
SNCA-208ENST00000505199 BAZ1AQ9NRL2 1556 aaPredicted RBP23.23■■□□□ 1.31
SNCA-208ENST00000505199 CC2D2AQ9P2K1 1620 aa23.2■■□□□ 1.3
SNCA-208ENST00000505199 CECR2Q9BXF3 1484 aa23.17■■□□□ 1.3
SNCA-208ENST00000505199 SMARCA4P51532 1647 aa23.16■■□□□ 1.3
SNCA-208ENST00000505199 DNAJC5BQ9UF47 199 aa23.16■■□□□ 1.3
SNCA-208ENST00000505199 PEG3Q9GZU2 1588 aa23.05■■□□□ 1.28
SNCA-208ENST00000505199 SMARCA2P51531 1590 aa23.03■■□□□ 1.28
SNCA-208ENST00000505199 NCAPD3P42695 1498 aa22.99■■□□□ 1.27
SNCA-208ENST00000505199 MROH2BQ7Z745 1585 aa22.98■■□□□ 1.27
SNCA-208ENST00000505199 ATAD2BQ9ULI0 1458 aa22.97■■□□□ 1.27
SNCA-208ENST00000505199 HMGXB3Q12766 1538 aa22.92■■□□□ 1.26
SNCA-208ENST00000505199 RSF1Q96T23 1441 aaPredicted RBP22.85■■□□□ 1.25
SNCA-208ENST00000505199 BAZ1BQ9UIG0 1483 aaKnown RBP22.79■■□□□ 1.24
SNCA-208ENST00000505199 WIZO95785 1651 aa22.72■■□□□ 1.23
SNCA-208ENST00000505199 TOP2AP11388 1531 aaKnown RBP22.61■■□□□ 1.21
SNCA-208ENST00000505199 LAMC3Q9Y6N6 1575 aa22.35■■□□□ 1.17
SNCA-208ENST00000505199 CADPSQ9ULU8 1353 aa22.29■■□□□ 1.16
SNCA-208ENST00000505199 CCDC88BA6NC98 1476 aa22.27■■□□□ 1.16
SNCA-208ENST00000505199 SUPT5HO00267 1087 aaKnown RBP22.26■■□□□ 1.15
SNCA-208ENST00000505199 CFTRP13569 1480 aa22.23■■□□□ 1.15
SNCA-208ENST00000505199 PDS5BQ9NTI5 1447 aa22.17■■□□□ 1.14
SNCA-208ENST00000505199 NESP48681 1621 aa22.17■■□□□ 1.14
SNCA-208ENST00000505199 PRDM2Q13029 1718 aa22.1■■□□□ 1.13
SNCA-208ENST00000505199 ERCC6Q03468 1493 aa22.07■■□□□ 1.12
SNCA-208ENST00000505199 FANCD2Q9BXW9 1451 aa21.99■■□□□ 1.11
SNCA-208ENST00000505199 KIF21AQ7Z4S6 1674 aa21.98■■□□□ 1.11
SNCA-208ENST00000505199 CEP164Q9UPV0 1460 aa21.96■■□□□ 1.11
SNCA-208ENST00000505199 THOC2Q8NI27 1593 aaKnown RBP21.9■■□□□ 1.1
SNCA-208ENST00000505199 MRC2Q9UBG0 1479 aa21.89■■□□□ 1.09
SNCA-208ENST00000505199 CUX2O14529 1486 aa21.88■■□□□ 1.09
SNCA-208ENST00000505199 WDR62O43379 1518 aa21.84■■□□□ 1.09
SNCA-208ENST00000505199 ABCC8Q09428 1581 aa21.82■■□□□ 1.08
SNCA-208ENST00000505199 URB2Q14146 1524 aaKnown RBP21.72■■□□□ 1.07
SNCA-208ENST00000505199 DNMBPQ6XZF7 1577 aa21.7■■□□□ 1.06
SNCA-208ENST00000505199 TOPBP1Q92547 1522 aa21.67■■□□□ 1.06
SNCA-208ENST00000505199 WRNQ14191 1432 aaPredicted RBP eCLIP21.56■■□□□ 1.04
SNCA-208ENST00000505199 CUX1P39880 1505 aa21.56■■□□□ 1.04
SNCA-208ENST00000505199 IFT140Q96RY7 1462 aa21.52■■□□□ 1.04
SNCA-208ENST00000505199 TOP2BQ02880 1626 aa21.52■■□□□ 1.04
SNCA-208ENST00000505199 BIVM-ERCC5R4GMW8 1640 aa21.51■■□□□ 1.03
SNCA-208ENST00000505199 POLA1P09884 1462 aaPredicted RBP21.5■■□□□ 1.03
SNCA-208ENST00000505199 FGD5Q6ZNL6 1462 aa21.46■■□□□ 1.03
SNCA-208ENST00000505199 WDR97A6NE52 1622 aa21.45■■□□□ 1.02
SNCA-208ENST00000505199 TARBP1Q13395 1621 aaKnown RBP21.44■■□□□ 1.02
SNCA-208ENST00000505199 SYNJ1O43426 1573 aa21.43■■□□□ 1.02
SNCA-208ENST00000505199 SOGA1O94964 1423 aa21.4■■□□□ 1.02
SNCA-208ENST00000505199 ABCA10Q8WWZ4 1543 aa21.34■■□□□ 1.01
SNCA-208ENST00000505199 RAD54L2Q9Y4B4 1467 aa21.31■■□□□ 1
SNCA-208ENST00000505199 EIF4G3O43432 1585 aaKnown RBP21.27■■□□□ 1
SNCA-208ENST00000505199 ZNF608Q9ULD9 1512 aaPredicted RBP21.27■■□□□ 1
SNCA-208ENST00000505199 ABCA5Q8WWZ7 1642 aa21.22■□□□□ 0.99
SNCA-208ENST00000505199 AQRO60306 1485 aaKnown RBP eCLIP21.19■□□□□ 0.98
SNCA-208ENST00000505199 GAPVD1Q14C86 1478 aa21.19■□□□□ 0.98
SNCA-208ENST00000505199 TDRD9Q8NDG6 1382 aaKnown RBP21.18■□□□□ 0.98
SNCA-208ENST00000505199 GRIN2BQ13224 1484 aa21.18■□□□□ 0.98
SNCA-208ENST00000505199 TRIM41Q8WV44 630 aa21.15■□□□□ 0.98
SNCA-208ENST00000505199 MAGI1Q96QZ7 1491 aaPredicted RBP21.14■□□□□ 0.98
SNCA-208ENST00000505199 ERICH3Q5RHP9 1530 aa21.13■□□□□ 0.97
SNCA-208ENST00000505199 KIF27Q86VH2 1401 aa21.12■□□□□ 0.97
SNCA-208ENST00000505199 PBRM1Q86U86 1689 aa21.11■□□□□ 0.97
SNCA-208ENST00000505199 SNAPC4Q5SXM2 1469 aa21.03■□□□□ 0.96
SNCA-208ENST00000505199 SYNJ2O15056 1496 aa21.02■□□□□ 0.96
SNCA-208ENST00000505199 CHIC1Q5VXU3 224 aa21.01■□□□□ 0.95
SNCA-208ENST00000505199 FHAD1B1AJZ9 1412 aa20.98■□□□□ 0.95
SNCA-208ENST00000505199 CUL7Q14999 1698 aa20.98■□□□□ 0.95
SNCA-208ENST00000505199 ADAMTS12P58397 1594 aa20.97■□□□□ 0.95
SNCA-208ENST00000505199 EEA1Q15075 1411 aa20.96■□□□□ 0.95
SNCA-208ENST00000505199 IGF1RP08069 1367 aa20.96■□□□□ 0.95
SNCA-208ENST00000505199 OSCARQ8IYS5 282 aa20.94■□□□□ 0.94
SNCA-208ENST00000505199 CHD1O14646 1710 aa20.92■□□□□ 0.94
SNCA-208ENST00000505199 CHMP7Q8WUX9 453 aaPredicted RBP20.91■□□□□ 0.94
SNCA-208ENST00000505199 GRIN2AQ12879 1464 aa20.89■□□□□ 0.94
SNCA-208ENST00000505199 CARMIL1Q5VZK9 1371 aa20.84■□□□□ 0.93
SNCA-208ENST00000505199 NUP160Q12769 1436 aa20.82■□□□□ 0.92
SNCA-208ENST00000505199 FBLN2P98095 1184 aa20.82■□□□□ 0.92
SNCA-208ENST00000505199 DNAJC5Q9H3Z4 198 aa20.82■□□□□ 0.92
SNCA-208ENST00000505199 RUSC2Q8N2Y8 1516 aa20.82■□□□□ 0.92
SNCA-208ENST00000505199 PRXQ9BXM0 1461 aa20.78■□□□□ 0.92
SNCA-208ENST00000505199 CLASP1Q7Z460 1538 aa20.78■□□□□ 0.92
SNCA-208ENST00000505199 RAPGEF2Q9Y4G8 1499 aa20.77■□□□□ 0.92
SNCA-208ENST00000505199 CSRNP3Q8WYN3 585 aa20.76■□□□□ 0.91
SNCA-208ENST00000505199 CEP170Q5SW79 1584 aa20.72■□□□□ 0.91
SNCA-208ENST00000505199 KIAA0586Q9BVV6 1533 aa20.68■□□□□ 0.9
SNCA-208ENST00000505199 KIF21BO75037 1637 aa20.66■□□□□ 0.9
SNCA-208ENST00000505199 SHROOM2Q13796 1616 aa20.64■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms