RNA–Protein interactions for RNA: ENST00000502820.1

HTT-202, Transcript of huntingtin, humanhuman

TSL 3

Gene HTT, Length 287 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HTT-202ENST00000502820 NISCHQ9Y2I1 1504 aa12.67□□□□□ -0.38
HTT-202ENST00000502820 ABCC9O60706 1549 aa12.18□□□□□ -0.46
HTT-202ENST00000502820 DNAJC5BQ9UF47 199 aa11.84□□□□□ -0.51
HTT-202ENST00000502820 PABPN1Q86U42 306 aaKnown RBP eCLIP11.4□□□□□ -0.58
HTT-202ENST00000502820 CCDC180Q9P1Z9 1646 aa11.39□□□□□ -0.59
HTT-202ENST00000502820 DCAF8L2P0C7V8 631 aa11.34□□□□□ -0.59
HTT-202ENST00000502820 RB1CC1Q8TDY2 1594 aa11.21□□□□□ -0.61
HTT-202ENST00000502820 DNAJC5Q9H3Z4 198 aa11.16□□□□□ -0.62
HTT-202ENST00000502820 NACADO15069 1562 aa10.99□□□□□ -0.65
HTT-202ENST00000502820 CECR2Q9BXF3 1484 aa10.97□□□□□ -0.65
HTT-202ENST00000502820 BICRAQ9NZM4 1560 aa10.85□□□□□ -0.67
HTT-202ENST00000502820 CC2D2AQ9P2K1 1620 aa10.84□□□□□ -0.67
HTT-202ENST00000502820 UNC13AQ9UPW8 1703 aa10.8□□□□□ -0.68
HTT-202ENST00000502820 TRIM41Q8WV44 630 aa10.72□□□□□ -0.69
HTT-202ENST00000502820 EIF4G1Q04637 1599 aaKnown RBP10.69□□□□□ -0.7
HTT-202ENST00000502820 SCRIBQ14160 1630 aa10.6□□□□□ -0.71
HTT-202ENST00000502820 ERCC6Q03468 1493 aa10.57□□□□□ -0.72
HTT-202ENST00000502820 MYO15BQ96JP2 1530 aa10.57□□□□□ -0.72
HTT-202ENST00000502820 SHROOM4Q9ULL8 1493 aa10.56□□□□□ -0.72
HTT-202ENST00000502820 CUX2O14529 1486 aa10.52□□□□□ -0.73
HTT-202ENST00000502820 ZCCHC6Q5VYS8 1495 aaKnown RBP10.36□□□□□ -0.75
HTT-202ENST00000502820 DCAF1Q9Y4B6 1507 aa10.29□□□□□ -0.76
HTT-202ENST00000502820 NESP48681 1621 aa10.29□□□□□ -0.76
HTT-202ENST00000502820 AEBP2Q6ZN18 517 aaPredicted RBP10.21□□□□□ -0.77
HTT-202ENST00000502820 SMARCA2P51531 1590 aa10.19□□□□□ -0.78
HTT-202ENST00000502820 NCAPD3P42695 1498 aa10.18□□□□□ -0.78
HTT-202ENST00000502820 TRHP20396 242 aaPredicted RBP10.17□□□□□ -0.78
HTT-202ENST00000502820 OSCARQ8IYS5 282 aa10.16□□□□□ -0.78
HTT-202ENST00000502820 ATAD2BQ9ULI0 1458 aa10.14□□□□□ -0.79
HTT-202ENST00000502820 THOC2Q8NI27 1593 aaKnown RBP10.1□□□□□ -0.79
HTT-202ENST00000502820 PDS5BQ9NTI5 1447 aa10.08□□□□□ -0.8
HTT-202ENST00000502820 BAZ1BQ9UIG0 1483 aaKnown RBP10.06□□□□□ -0.8
HTT-202ENST00000502820 CYB5RLQ6IPT4 315 aa10.04□□□□□ -0.8
HTT-202ENST00000502820 HMGXB3Q12766 1538 aa10□□□□□ -0.81
HTT-202ENST00000502820 BAZ1AQ9NRL2 1556 aaPredicted RBP10□□□□□ -0.81
HTT-202ENST00000502820 LAMC3Q9Y6N6 1575 aa10□□□□□ -0.81
HTT-202ENST00000502820 KIF21AQ7Z4S6 1674 aa9.99□□□□□ -0.81
HTT-202ENST00000502820 MRC2Q9UBG0 1479 aa9.98□□□□□ -0.81
HTT-202ENST00000502820 SMARCA4P51532 1647 aa9.95□□□□□ -0.82
HTT-202ENST00000502820 CADPSQ9ULU8 1353 aa9.94□□□□□ -0.82
HTT-202ENST00000502820 RIMBP3CA6NJZ7 1639 aa9.91□□□□□ -0.82
HTT-202ENST00000502820 RIMBP3BA6NNM3 1639 aa9.91□□□□□ -0.82
HTT-202ENST00000502820 RIMBP3Q9UFD9 1639 aa9.91□□□□□ -0.82
HTT-202ENST00000502820 WDR62O43379 1518 aa9.89□□□□□ -0.83
HTT-202ENST00000502820 FBLN2P98095 1184 aa9.89□□□□□ -0.83
HTT-202ENST00000502820 CEP164Q9UPV0 1460 aa9.88□□□□□ -0.83
HTT-202ENST00000502820 ARHGEF11O15085 1522 aa9.87□□□□□ -0.83
HTT-202ENST00000502820 FANCD2Q9BXW9 1451 aa9.84□□□□□ -0.83
HTT-202ENST00000502820 MROH2BQ7Z745 1585 aa9.8□□□□□ -0.84
HTT-202ENST00000502820 URB2Q14146 1524 aaKnown RBP9.75□□□□□ -0.85
HTT-202ENST00000502820 ZNF608Q9ULD9 1512 aaPredicted RBP9.75□□□□□ -0.85
HTT-202ENST00000502820 PEG3Q9GZU2 1588 aa9.75□□□□□ -0.85
HTT-202ENST00000502820 ARAP1Q96P48 1450 aa9.73□□□□□ -0.85
HTT-202ENST00000502820 ILDR1Q86SU0 546 aaPredicted RBP9.73□□□□□ -0.85
HTT-202ENST00000502820 IFT140Q96RY7 1462 aa9.67□□□□□ -0.86
HTT-202ENST00000502820 CFTRP13569 1480 aa9.66□□□□□ -0.86
HTT-202ENST00000502820 AQRO60306 1485 aaKnown RBP eCLIP9.66□□□□□ -0.863e-7■■■■■ 30.5
HTT-202ENST00000502820 WIZO95785 1651 aa9.64□□□□□ -0.87
HTT-202ENST00000502820 CHMP7Q8WUX9 453 aaPredicted RBP9.64□□□□□ -0.87
HTT-202ENST00000502820 RSF1Q96T23 1441 aaPredicted RBP9.61□□□□□ -0.87
HTT-202ENST00000502820 EIF4G3O43432 1585 aaKnown RBP9.58□□□□□ -0.88
HTT-202ENST00000502820 TDRD9Q8NDG6 1382 aaKnown RBP9.57□□□□□ -0.88
HTT-202ENST00000502820 TOPBP1Q92547 1522 aa9.56□□□□□ -0.88
HTT-202ENST00000502820 CHD1O14646 1710 aa9.55□□□□□ -0.88
HTT-202ENST00000502820 GAPVD1Q14C86 1478 aa9.51□□□□□ -0.89
HTT-202ENST00000502820 SNAPC4Q5SXM2 1469 aa9.5□□□□□ -0.89
HTT-202ENST00000502820 RAD54L2Q9Y4B4 1467 aa9.5□□□□□ -0.89
HTT-202ENST00000502820 KDM4FA0A1W2PPD8 638 aa9.48□□□□□ -0.89
HTT-202ENST00000502820 SOGA1O94964 1423 aa9.48□□□□□ -0.89
HTT-202ENST00000502820 ABCC8Q09428 1581 aa9.47□□□□□ -0.89
HTT-202ENST00000502820 FAM69CQ0P6D2 419 aa9.47□□□□□ -0.89
HTT-202ENST00000502820 TOP2AP11388 1531 aaKnown RBP9.46□□□□□ -0.9
HTT-202ENST00000502820 SYNJ1O43426 1573 aa9.46□□□□□ -0.9
HTT-202ENST00000502820 CCDC88BA6NC98 1476 aa9.44□□□□□ -0.9
HTT-202ENST00000502820 POLA1P09884 1462 aaPredicted RBP9.44□□□□□ -0.9
HTT-202ENST00000502820 DNMBPQ6XZF7 1577 aa9.43□□□□□ -0.9
HTT-202ENST00000502820 CLASP1Q7Z460 1538 aa9.43□□□□□ -0.9
HTT-202ENST00000502820 NPM1P06748 294 aaKnown RBP eCLIP9.42□□□□□ -0.9
HTT-202ENST00000502820 TARBP1Q13395 1621 aaKnown RBP9.42□□□□□ -0.9
HTT-202ENST00000502820 SYNJ2O15056 1496 aa9.38□□□□□ -0.91
HTT-202ENST00000502820 GRIN2BQ13224 1484 aa9.38□□□□□ -0.91
HTT-202ENST00000502820 MAGI1Q96QZ7 1491 aaPredicted RBP9.37□□□□□ -0.91
HTT-202ENST00000502820 ERCC6L2Q5T890 1561 aa9.36□□□□□ -0.91
HTT-202ENST00000502820 TTBK1Q5TCY1 1321 aaPredicted RBP9.35□□□□□ -0.91
HTT-202ENST00000502820 FGD5Q6ZNL6 1462 aa9.34□□□□□ -0.91
HTT-202ENST00000502820 PRDM2Q13029 1718 aa9.31□□□□□ -0.92
HTT-202ENST00000502820 FBXO41Q8TF61 875 aa9.29□□□□□ -0.92
HTT-202ENST00000502820 KDM6BO15054 1643 aa9.27□□□□□ -0.92
HTT-202ENST00000502820 PRG4Q92954 1404 aaPredicted RBP9.27□□□□□ -0.93
HTT-202ENST00000502820 JPH4Q96JJ6 628 aa9.26□□□□□ -0.93
HTT-202ENST00000502820 ABCC10Q5T3U5 1492 aa9.26□□□□□ -0.93
HTT-202ENST00000502820 CEP170Q5SW79 1584 aa9.25□□□□□ -0.93
HTT-202ENST00000502820 ADGRL1O94910 1474 aa9.25□□□□□ -0.93
HTT-202ENST00000502820 GRIN2AQ12879 1464 aa9.24□□□□□ -0.93
HTT-202ENST00000502820 HECW2Q9P2P5 1572 aa9.23□□□□□ -0.93
HTT-202ENST00000502820 CUX1P39880 1505 aa9.22□□□□□ -0.93
HTT-202ENST00000502820 KIF13AQ9H1H9 1805 aa9.21□□□□□ -0.93
HTT-202ENST00000502820 LMTK3Q96Q04 1460 aa9.21□□□□□ -0.93
HTT-202ENST00000502820 WDR97A6NE52 1622 aa9.2□□□□□ -0.94
HTT-202ENST00000502820 PBRM1Q86U86 1689 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms