RNA–Protein interactions for RNA: ENST00000498495.1

HSPG2-213, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 2

Gene HSPG2, Length 488 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-213ENST00000498495 NISCHQ9Y2I1 1504 aa30.97■■■□□ 2.55
HSPG2-213ENST00000498495 CCDC180Q9P1Z9 1646 aa27.49■■□□□ 1.99
HSPG2-213ENST00000498495 ABCC9O60706 1549 aa27.07■■□□□ 1.92
HSPG2-213ENST00000498495 DCAF8L2P0C7V8 631 aa26.12■■□□□ 1.77
HSPG2-213ENST00000498495 RB1CC1Q8TDY2 1594 aa25.97■■□□□ 1.75
HSPG2-213ENST00000498495 NACADO15069 1562 aa25.92■■□□□ 1.74
HSPG2-213ENST00000498495 ZCCHC6Q5VYS8 1495 aaKnown RBP25.74■■□□□ 1.71
HSPG2-213ENST00000498495 MYO15BQ96JP2 1530 aa25.72■■□□□ 1.71
HSPG2-213ENST00000498495 DCAF1Q9Y4B6 1507 aa25.58■■□□□ 1.69
HSPG2-213ENST00000498495 PABPN1Q86U42 306 aaKnown RBP eCLIP25.37■■□□□ 1.65
HSPG2-213ENST00000498495 UNC13AQ9UPW8 1703 aa25.3■■□□□ 1.64
HSPG2-213ENST00000498495 BICRAQ9NZM4 1560 aa25.14■■□□□ 1.62
HSPG2-213ENST00000498495 SCRIBQ14160 1630 aa25.12■■□□□ 1.61
HSPG2-213ENST00000498495 DNAJC5BQ9UF47 199 aa24.96■■□□□ 1.59
HSPG2-213ENST00000498495 SHROOM4Q9ULL8 1493 aa24.86■■□□□ 1.57
HSPG2-213ENST00000498495 EIF4G1Q04637 1599 aaKnown RBP24.52■■□□□ 1.52
HSPG2-213ENST00000498495 CC2D2AQ9P2K1 1620 aa24.44■■□□□ 1.5
HSPG2-213ENST00000498495 CECR2Q9BXF3 1484 aa24.32■■□□□ 1.48
HSPG2-213ENST00000498495 SMARCA4P51532 1647 aa24.01■■□□□ 1.43
HSPG2-213ENST00000498495 BAZ1AQ9NRL2 1556 aaPredicted RBP24■■□□□ 1.43
HSPG2-213ENST00000498495 NCAPD3P42695 1498 aa23.95■■□□□ 1.42
HSPG2-213ENST00000498495 ATAD2BQ9ULI0 1458 aa23.94■■□□□ 1.42
HSPG2-213ENST00000498495 SMARCA2P51531 1590 aa23.9■■□□□ 1.42
HSPG2-213ENST00000498495 MROH2BQ7Z745 1585 aa23.86■■□□□ 1.41
HSPG2-213ENST00000498495 HMGXB3Q12766 1538 aa23.76■■□□□ 1.39
HSPG2-213ENST00000498495 PEG3Q9GZU2 1588 aa23.76■■□□□ 1.39
HSPG2-213ENST00000498495 BAZ1BQ9UIG0 1483 aaKnown RBP23.75■■□□□ 1.39
HSPG2-213ENST00000498495 RSF1Q96T23 1441 aaPredicted RBP23.6■■□□□ 1.37
HSPG2-213ENST00000498495 WIZO95785 1651 aa23.6■■□□□ 1.37
HSPG2-213ENST00000498495 NESP48681 1621 aa23.38■■□□□ 1.33
HSPG2-213ENST00000498495 ERCC6Q03468 1493 aa23.36■■□□□ 1.33
HSPG2-213ENST00000498495 TOP2AP11388 1531 aaKnown RBP23.33■■□□□ 1.32
HSPG2-213ENST00000498495 LAMC3Q9Y6N6 1575 aa23.3■■□□□ 1.32
HSPG2-213ENST00000498495 CADPSQ9ULU8 1353 aa23.28■■□□□ 1.32
HSPG2-213ENST00000498495 PDS5BQ9NTI5 1447 aa23.21■■□□□ 1.31
HSPG2-213ENST00000498495 CCDC88BA6NC98 1476 aa23.11■■□□□ 1.29
HSPG2-213ENST00000498495 CFTRP13569 1480 aa23.09■■□□□ 1.29
HSPG2-213ENST00000498495 SUPT5HO00267 1087 aaKnown RBP23.08■■□□□ 1.29
HSPG2-213ENST00000498495 CUX2O14529 1486 aa23.08■■□□□ 1.29
HSPG2-213ENST00000498495 KIF21AQ7Z4S6 1674 aa23.05■■□□□ 1.28
HSPG2-213ENST00000498495 FANCD2Q9BXW9 1451 aa22.98■■□□□ 1.27
HSPG2-213ENST00000498495 THOC2Q8NI27 1593 aaKnown RBP22.97■■□□□ 1.27
HSPG2-213ENST00000498495 CEP164Q9UPV0 1460 aa22.95■■□□□ 1.26
HSPG2-213ENST00000498495 MRC2Q9UBG0 1479 aa22.92■■□□□ 1.26
HSPG2-213ENST00000498495 WDR62O43379 1518 aa22.82■■□□□ 1.24
HSPG2-213ENST00000498495 PRDM2Q13029 1718 aa22.8■■□□□ 1.24
HSPG2-213ENST00000498495 URB2Q14146 1524 aaKnown RBP22.72■■□□□ 1.23
HSPG2-213ENST00000498495 ABCC8Q09428 1581 aa22.63■■□□□ 1.21
HSPG2-213ENST00000498495 TOPBP1Q92547 1522 aa22.59■■□□□ 1.21
HSPG2-213ENST00000498495 DNAJC5Q9H3Z4 198 aa22.55■■□□□ 1.2
HSPG2-213ENST00000498495 DNMBPQ6XZF7 1577 aa22.54■■□□□ 1.2
HSPG2-213ENST00000498495 IFT140Q96RY7 1462 aa22.48■■□□□ 1.19
HSPG2-213ENST00000498495 POLA1P09884 1462 aaPredicted RBP22.39■■□□□ 1.17
HSPG2-213ENST00000498495 CUX1P39880 1505 aa22.38■■□□□ 1.17
HSPG2-213ENST00000498495 ZNF608Q9ULD9 1512 aaPredicted RBP22.37■■□□□ 1.17
HSPG2-213ENST00000498495 SOGA1O94964 1423 aa22.37■■□□□ 1.17
HSPG2-213ENST00000498495 FGD5Q6ZNL6 1462 aa22.34■■□□□ 1.17
HSPG2-213ENST00000498495 RAD54L2Q9Y4B4 1467 aa22.34■■□□□ 1.17
HSPG2-213ENST00000498495 TARBP1Q13395 1621 aaKnown RBP22.31■■□□□ 1.16
HSPG2-213ENST00000498495 AQRO60306 1485 aaKnown RBP eCLIP22.28■■□□□ 1.169e-8■■■■■ 30.5
HSPG2-213ENST00000498495 WRNQ14191 1432 aaPredicted RBP eCLIP22.27■■□□□ 1.16
HSPG2-213ENST00000498495 TDRD9Q8NDG6 1382 aaKnown RBP22.25■■□□□ 1.15
HSPG2-213ENST00000498495 OSCARQ8IYS5 282 aa22.25■■□□□ 1.15
HSPG2-213ENST00000498495 EIF4G3O43432 1585 aaKnown RBP22.23■■□□□ 1.15
HSPG2-213ENST00000498495 TOP2BQ02880 1626 aa22.16■■□□□ 1.14
HSPG2-213ENST00000498495 SYNJ1O43426 1573 aa22.15■■□□□ 1.14
HSPG2-213ENST00000498495 BIVM-ERCC5R4GMW8 1640 aa22.13■■□□□ 1.13
HSPG2-213ENST00000498495 FBLN2P98095 1184 aa22.13■■□□□ 1.13
HSPG2-213ENST00000498495 WDR97A6NE52 1622 aa22.12■■□□□ 1.13
HSPG2-213ENST00000498495 ABCA10Q8WWZ4 1543 aa22.11■■□□□ 1.13
HSPG2-213ENST00000498495 GAPVD1Q14C86 1478 aa22.08■■□□□ 1.12
HSPG2-213ENST00000498495 GRIN2BQ13224 1484 aa22.07■■□□□ 1.12
HSPG2-213ENST00000498495 CHMP7Q8WUX9 453 aaPredicted RBP22.04■■□□□ 1.12
HSPG2-213ENST00000498495 SNAPC4Q5SXM2 1469 aa22.03■■□□□ 1.12
HSPG2-213ENST00000498495 MAGI1Q96QZ7 1491 aaPredicted RBP22■■□□□ 1.11
HSPG2-213ENST00000498495 ABCA5Q8WWZ7 1642 aa21.97■■□□□ 1.11
HSPG2-213ENST00000498495 CHD1O14646 1710 aa21.96■■□□□ 1.11
HSPG2-213ENST00000498495 PBRM1Q86U86 1689 aa21.95■■□□□ 1.1
HSPG2-213ENST00000498495 SYNJ2O15056 1496 aa21.92■■□□□ 1.1
HSPG2-213ENST00000498495 ERICH3Q5RHP9 1530 aa21.84■■□□□ 1.09
HSPG2-213ENST00000498495 TRIM41Q8WV44 630 aa21.83■■□□□ 1.09
HSPG2-213ENST00000498495 FHAD1B1AJZ9 1412 aa21.82■■□□□ 1.08
HSPG2-213ENST00000498495 KIF27Q86VH2 1401 aa21.82■■□□□ 1.08
HSPG2-213ENST00000498495 ADAMTS12P58397 1594 aa21.77■■□□□ 1.08
HSPG2-213ENST00000498495 GRIN2AQ12879 1464 aa21.77■■□□□ 1.07
HSPG2-213ENST00000498495 ARHGEF11O15085 1522 aa21.75■■□□□ 1.07
HSPG2-213ENST00000498495 IGF1RP08069 1367 aa21.75■■□□□ 1.07
HSPG2-213ENST00000498495 RIMBP3CA6NJZ7 1639 aa21.75■■□□□ 1.07
HSPG2-213ENST00000498495 RIMBP3BA6NNM3 1639 aa21.75■■□□□ 1.07
HSPG2-213ENST00000498495 RIMBP3Q9UFD9 1639 aa21.75■■□□□ 1.07
HSPG2-213ENST00000498495 CLASP1Q7Z460 1538 aa21.73■■□□□ 1.07
HSPG2-213ENST00000498495 CYB5RLQ6IPT4 315 aa21.7■■□□□ 1.06
HSPG2-213ENST00000498495 NUP160Q12769 1436 aa21.67■■□□□ 1.06
HSPG2-213ENST00000498495 CARMIL1Q5VZK9 1371 aa21.64■■□□□ 1.06
HSPG2-213ENST00000498495 CEP170Q5SW79 1584 aa21.63■■□□□ 1.05
HSPG2-213ENST00000498495 CUL7Q14999 1698 aa21.6■■□□□ 1.05
HSPG2-213ENST00000498495 RUSC2Q8N2Y8 1516 aa21.59■■□□□ 1.05
HSPG2-213ENST00000498495 JPH4Q96JJ6 628 aa21.57■■□□□ 1.04
HSPG2-213ENST00000498495 ARAP1Q96P48 1450 aa21.57■■□□□ 1.04
HSPG2-213ENST00000498495 KIAA0586Q9BVV6 1533 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms