RNA–Protein interactions for RNA: ENST00000497977.1

PTPRN-218, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 3

Gene PTPRN, Length 701 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-218ENST00000497977 NISCHQ9Y2I1 1504 aa24.71■■□□□ 1.55
PTPRN-218ENST00000497977 CCDC180Q9P1Z9 1646 aa21.82■■□□□ 1.08
PTPRN-218ENST00000497977 ABCC9O60706 1549 aa21.57■■□□□ 1.04
PTPRN-218ENST00000497977 DCAF8L2P0C7V8 631 aa21.02■□□□□ 0.96
PTPRN-218ENST00000497977 RB1CC1Q8TDY2 1594 aa20.74■□□□□ 0.91
PTPRN-218ENST00000497977 NACADO15069 1562 aa20.72■□□□□ 0.91
PTPRN-218ENST00000497977 MYO15BQ96JP2 1530 aa20.62■□□□□ 0.89
PTPRN-218ENST00000497977 ZCCHC6Q5VYS8 1495 aaKnown RBP20.5■□□□□ 0.87
PTPRN-218ENST00000497977 DCAF1Q9Y4B6 1507 aa20.47■□□□□ 0.87
PTPRN-218ENST00000497977 PABPN1Q86U42 306 aaKnown RBP eCLIP20.3■□□□□ 0.84
PTPRN-218ENST00000497977 SHROOM4Q9ULL8 1493 aa19.96■□□□□ 0.79
PTPRN-218ENST00000497977 SCRIBQ14160 1630 aa19.92■□□□□ 0.78
PTPRN-218ENST00000497977 BICRAQ9NZM4 1560 aa19.91■□□□□ 0.78
PTPRN-218ENST00000497977 DNAJC5BQ9UF47 199 aa19.89■□□□□ 0.77
PTPRN-218ENST00000497977 UNC13AQ9UPW8 1703 aa19.82■□□□□ 0.76
PTPRN-218ENST00000497977 EIF4G1Q04637 1599 aaKnown RBP19.51■□□□□ 0.71
PTPRN-218ENST00000497977 CECR2Q9BXF3 1484 aa19.45■□□□□ 0.7
PTPRN-218ENST00000497977 CC2D2AQ9P2K1 1620 aa19.41■□□□□ 0.7
PTPRN-218ENST00000497977 NCAPD3P42695 1498 aa19.19■□□□□ 0.66
PTPRN-218ENST00000497977 BAZ1AQ9NRL2 1556 aaPredicted RBP19.19■□□□□ 0.66
PTPRN-218ENST00000497977 ATAD2BQ9ULI0 1458 aa19.13■□□□□ 0.65
PTPRN-218ENST00000497977 SMARCA2P51531 1590 aa19.11■□□□□ 0.65
PTPRN-218ENST00000497977 SMARCA4P51532 1647 aa19.07■□□□□ 0.64
PTPRN-218ENST00000497977 BAZ1BQ9UIG0 1483 aaKnown RBP18.99■□□□□ 0.63
PTPRN-218ENST00000497977 MROH2BQ7Z745 1585 aa18.97■□□□□ 0.63
PTPRN-218ENST00000497977 HMGXB3Q12766 1538 aa18.95■□□□□ 0.62
PTPRN-218ENST00000497977 PEG3Q9GZU2 1588 aa18.92■□□□□ 0.62
PTPRN-218ENST00000497977 RSF1Q96T23 1441 aaPredicted RBP18.85■□□□□ 0.61
PTPRN-218ENST00000497977 ERCC6Q03468 1493 aa18.72■□□□□ 0.59
PTPRN-218ENST00000497977 CADPSQ9ULU8 1353 aa18.69■□□□□ 0.58
PTPRN-218ENST00000497977 PDS5BQ9NTI5 1447 aa18.68■□□□□ 0.58
PTPRN-218ENST00000497977 WIZO95785 1651 aa18.66■□□□□ 0.58
PTPRN-218ENST00000497977 LAMC3Q9Y6N6 1575 aa18.59■□□□□ 0.57
PTPRN-218ENST00000497977 TOP2AP11388 1531 aaKnown RBP18.58■□□□□ 0.56
PTPRN-218ENST00000497977 NESP48681 1621 aa18.56■□□□□ 0.56
PTPRN-218ENST00000497977 SUPT5HO00267 1087 aaKnown RBP18.53■□□□□ 0.56
PTPRN-218ENST00000497977 CUX2O14529 1486 aa18.5■□□□□ 0.55
PTPRN-218ENST00000497977 CFTRP13569 1480 aa18.47■□□□□ 0.55
PTPRN-218ENST00000497977 CCDC88BA6NC98 1476 aa18.45■□□□□ 0.54
PTPRN-218ENST00000497977 FANCD2Q9BXW9 1451 aa18.38■□□□□ 0.53
PTPRN-218ENST00000497977 CEP164Q9UPV0 1460 aa18.36■□□□□ 0.53
PTPRN-218ENST00000497977 MRC2Q9UBG0 1479 aa18.33■□□□□ 0.52
PTPRN-218ENST00000497977 ABCC8Q09428 1581 aa18.21■□□□□ 0.51
PTPRN-218ENST00000497977 THOC2Q8NI27 1593 aaKnown RBP18.17■□□□□ 0.5
PTPRN-218ENST00000497977 WDR62O43379 1518 aa18.17■□□□□ 0.5
PTPRN-218ENST00000497977 KIF21AQ7Z4S6 1674 aa18.15■□□□□ 0.5
PTPRN-218ENST00000497977 DNAJC5Q9H3Z4 198 aa18.13■□□□□ 0.49
PTPRN-218ENST00000497977 URB2Q14146 1524 aaKnown RBP18.08■□□□□ 0.49
PTPRN-218ENST00000497977 IFT140Q96RY7 1462 aa18.02■□□□□ 0.48
PTPRN-218ENST00000497977 TOPBP1Q92547 1522 aa18.01■□□□□ 0.47
PTPRN-218ENST00000497977 OSCARQ8IYS5 282 aa17.96■□□□□ 0.47
PTPRN-218ENST00000497977 DNMBPQ6XZF7 1577 aa17.96■□□□□ 0.46
PTPRN-218ENST00000497977 SOGA1O94964 1423 aa17.95■□□□□ 0.46
PTPRN-218ENST00000497977 PRDM2Q13029 1718 aa17.92■□□□□ 0.46
PTPRN-218ENST00000497977 POLA1P09884 1462 aaPredicted RBP17.86■□□□□ 0.45
PTPRN-218ENST00000497977 WRNQ14191 1432 aaPredicted RBP eCLIP17.83■□□□□ 0.45
PTPRN-218ENST00000497977 FBLN2P98095 1184 aa17.82■□□□□ 0.44
PTPRN-218ENST00000497977 TDRD9Q8NDG6 1382 aaKnown RBP17.81■□□□□ 0.44
PTPRN-218ENST00000497977 FGD5Q6ZNL6 1462 aa17.81■□□□□ 0.44
PTPRN-218ENST00000497977 ZNF608Q9ULD9 1512 aaPredicted RBP17.8■□□□□ 0.44
PTPRN-218ENST00000497977 AQRO60306 1485 aaKnown RBP eCLIP17.8■□□□□ 0.44
PTPRN-218ENST00000497977 CHMP7Q8WUX9 453 aaPredicted RBP17.79■□□□□ 0.44
PTPRN-218ENST00000497977 CUX1P39880 1505 aa17.78■□□□□ 0.44
PTPRN-218ENST00000497977 RAD54L2Q9Y4B4 1467 aa17.78■□□□□ 0.44
PTPRN-218ENST00000497977 GRIN2BQ13224 1484 aa17.69■□□□□ 0.42
PTPRN-218ENST00000497977 TARBP1Q13395 1621 aaKnown RBP17.69■□□□□ 0.42
PTPRN-218ENST00000497977 WDR97A6NE52 1622 aa17.69■□□□□ 0.42
PTPRN-218ENST00000497977 GAPVD1Q14C86 1478 aa17.67■□□□□ 0.42
PTPRN-218ENST00000497977 ABCA10Q8WWZ4 1543 aa17.67■□□□□ 0.42
PTPRN-218ENST00000497977 TOP2BQ02880 1626 aa17.63■□□□□ 0.41
PTPRN-218ENST00000497977 EIF4G3O43432 1585 aaKnown RBP17.62■□□□□ 0.41
PTPRN-218ENST00000497977 MAGI1Q96QZ7 1491 aaPredicted RBP17.62■□□□□ 0.41
PTPRN-218ENST00000497977 TRIM41Q8WV44 630 aa17.6■□□□□ 0.41
PTPRN-218ENST00000497977 SNAPC4Q5SXM2 1469 aa17.57■□□□□ 0.4
PTPRN-218ENST00000497977 SYNJ2O15056 1496 aa17.56■□□□□ 0.4
PTPRN-218ENST00000497977 KIF27Q86VH2 1401 aa17.55■□□□□ 0.4
PTPRN-218ENST00000497977 SYNJ1O43426 1573 aa17.54■□□□□ 0.4
PTPRN-218ENST00000497977 BIVM-ERCC5R4GMW8 1640 aa17.54■□□□□ 0.4
PTPRN-218ENST00000497977 FHAD1B1AJZ9 1412 aa17.51■□□□□ 0.39
PTPRN-218ENST00000497977 ERICH3Q5RHP9 1530 aa17.46■□□□□ 0.39
PTPRN-218ENST00000497977 IGF1RP08069 1367 aa17.45■□□□□ 0.38
PTPRN-218ENST00000497977 CYB5RLQ6IPT4 315 aa17.45■□□□□ 0.38
PTPRN-218ENST00000497977 ABCA5Q8WWZ7 1642 aa17.42■□□□□ 0.38
PTPRN-218ENST00000497977 GRIN2AQ12879 1464 aa17.39■□□□□ 0.37
PTPRN-218ENST00000497977 CARMIL1Q5VZK9 1371 aa17.38■□□□□ 0.37
PTPRN-218ENST00000497977 JPH4Q96JJ6 628 aa17.37■□□□□ 0.37
PTPRN-218ENST00000497977 ARHGEF11O15085 1522 aa17.33■□□□□ 0.37
PTPRN-218ENST00000497977 NUP160Q12769 1436 aa17.31■□□□□ 0.36
PTPRN-218ENST00000497977 PBRM1Q86U86 1689 aa17.31■□□□□ 0.36
PTPRN-218ENST00000497977 FAM9AQ8IZU1 332 aaPredicted RBP17.3■□□□□ 0.36
PTPRN-218ENST00000497977 CHD1O14646 1710 aa17.3■□□□□ 0.36
PTPRN-218ENST00000497977 ADAMTS12P58397 1594 aa17.28■□□□□ 0.36
PTPRN-218ENST00000497977 CSRNP3Q8WYN3 585 aa17.27■□□□□ 0.36
PTPRN-218ENST00000497977 CLASP1Q7Z460 1538 aa17.26■□□□□ 0.35
PTPRN-218ENST00000497977 RIMBP3CA6NJZ7 1639 aa17.25■□□□□ 0.35
PTPRN-218ENST00000497977 RIMBP3BA6NNM3 1639 aa17.25■□□□□ 0.35
PTPRN-218ENST00000497977 RIMBP3Q9UFD9 1639 aa17.25■□□□□ 0.35
PTPRN-218ENST00000497977 NPM1P06748 294 aaKnown RBP eCLIP17.23■□□□□ 0.35
PTPRN-218ENST00000497977 KIAA0586Q9BVV6 1533 aa17.22■□□□□ 0.35
PTPRN-218ENST00000497977 RAPGEF2Q9Y4G8 1499 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms