RNA–Protein interactions for RNA: ENST00000497250.5

CBWD5-233, Transcript of COBW domain containing 5, human

TSL 1 (best)

Gene CBWD5, Length 1,411 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CBWD5-233	ENST00000497250	NISCH	Q9Y2I1	1504 aa		42.15	■■■■■ 4.34
CBWD5-233	ENST00000497250	ABCC9	O60706	1549 aa		38.69	■■■■□ 3.78
CBWD5-233	ENST00000497250	CCDC180	Q9P1Z9	1646 aa		37.87	■■■■□ 3.65
CBWD5-233	ENST00000497250	DNAJC5B	Q9UF47	199 aa		37.02	■■■■□ 3.52
CBWD5-233	ENST00000497250	RB1CC1	Q8TDY2	1594 aa		36.43	■■■■□ 3.42
CBWD5-233	ENST00000497250	PABPN1	Q86U42	306 aa	Known RBP eCLIP	36.08	■■■■□ 3.37
CBWD5-233	ENST00000497250	NACAD	O15069	1562 aa		36.06	■■■■□ 3.36
CBWD5-233	ENST00000497250	DCAF8L2	P0C7V8	631 aa		36.04	■■■■□ 3.36
CBWD5-233	ENST00000497250	UNC13A	Q9UPW8	1703 aa		35.49	■■■■□ 3.27
CBWD5-233	ENST00000497250	BICRA	Q9NZM4	1560 aa		35.46	■■■■□ 3.27
CBWD5-233	ENST00000497250	MYO15B	Q96JP2	1530 aa		35.38	■■■■□ 3.25
CBWD5-233	ENST00000497250	CECR2	Q9BXF3	1484 aa		34.9	■■■■□ 3.18
CBWD5-233	ENST00000497250	CC2D2A	Q9P2K1	1620 aa		34.83	■■■■□ 3.17
CBWD5-233	ENST00000497250	SHROOM4	Q9ULL8	1493 aa		34.8	■■■■□ 3.16
CBWD5-233	ENST00000497250	ZCCHC6	Q5VYS8	1495 aa	Known RBP	34.76	■■■■□ 3.15
CBWD5-233	ENST00000497250	DCAF1	Q9Y4B6	1507 aa		34.72	■■■■□ 3.15
CBWD5-233	ENST00000497250	EIF4G1	Q04637	1599 aa	Known RBP	34.61	■■■■□ 3.13
CBWD5-233	ENST00000497250	SCRIB	Q14160	1630 aa		34.58	■■■■□ 3.13
CBWD5-233	ENST00000497250	DNAJC5	Q9H3Z4	198 aa		34.36	■■■■□ 3.09
CBWD5-233	ENST00000497250	CUX2	O14529	1486 aa		33.5	■■■□□ 2.95
CBWD5-233	ENST00000497250	NCAPD3	P42695	1498 aa		33.42	■■■□□ 2.94
CBWD5-233	ENST00000497250	ERCC6	Q03468	1493 aa		33.38	■■■□□ 2.93
CBWD5-233	ENST00000497250	ATAD2B	Q9ULI0	1458 aa		33.22	■■■□□ 2.91
CBWD5-233	ENST00000497250	NES	P48681	1621 aa		33.09	■■■□□ 2.89
CBWD5-233	ENST00000497250	SMARCA2	P51531	1590 aa		32.98	■■■□□ 2.87
CBWD5-233	ENST00000497250	HMGXB3	Q12766	1538 aa		32.97	■■■□□ 2.87
CBWD5-233	ENST00000497250	SMARCA4	P51532	1647 aa		32.92	■■■□□ 2.86
CBWD5-233	ENST00000497250	BAZ1B	Q9UIG0	1483 aa	Known RBP	32.8	■■■□□ 2.84
CBWD5-233	ENST00000497250	THOC2	Q8NI27	1593 aa	Known RBP	32.7	■■■□□ 2.83
CBWD5-233	ENST00000497250	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	32.69	■■■□□ 2.82
CBWD5-233	ENST00000497250	LAMC3	Q9Y6N6	1575 aa		32.62	■■■□□ 2.81
CBWD5-233	ENST00000497250	PEG3	Q9GZU2	1588 aa		32.61	■■■□□ 2.81
CBWD5-233	ENST00000497250	TRIM41	Q8WV44	630 aa		32.59	■■■□□ 2.81
CBWD5-233	ENST00000497250	PDS5B	Q9NTI5	1447 aa		32.56	■■■□□ 2.8
CBWD5-233	ENST00000497250	MROH2B	Q7Z745	1585 aa		32.5	■■■□□ 2.79
CBWD5-233	ENST00000497250	KIF21A	Q7Z4S6	1674 aa		32.45	■■■□□ 2.78
CBWD5-233	ENST00000497250	CADPS	Q9ULU8	1353 aa		32.4	■■■□□ 2.78
CBWD5-233	ENST00000497250	MRC2	Q9UBG0	1479 aa		32.27	■■■□□ 2.76
CBWD5-233	ENST00000497250	WDR62	O43379	1518 aa		32.17	■■■□□ 2.74
CBWD5-233	ENST00000497250	OSCAR	Q8IYS5	282 aa		32.05	■■■□□ 2.72
CBWD5-233	ENST00000497250	WIZ	O95785	1651 aa		32.01	■■■□□ 2.71
CBWD5-233	ENST00000497250	CEP164	Q9UPV0	1460 aa		32	■■■□□ 2.71
CBWD5-233	ENST00000497250	FANCD2	Q9BXW9	1451 aa		31.97	■■■□□ 2.71
CBWD5-233	ENST00000497250	CFTR	P13569	1480 aa		31.86	■■■□□ 2.69
CBWD5-233	ENST00000497250	URB2	Q14146	1524 aa	Known RBP	31.76	■■■□□ 2.67
CBWD5-233	ENST00000497250	RSF1	Q96T23	1441 aa	Predicted RBP	31.66	■■■□□ 2.66
CBWD5-233	ENST00000497250	TOP2A	P11388	1531 aa	Known RBP	31.54	■■■□□ 2.64
CBWD5-233	ENST00000497250	RIMBP3C	A6NJZ7	1639 aa		31.5	■■■□□ 2.63
CBWD5-233	ENST00000497250	RIMBP3B	A6NNM3	1639 aa		31.5	■■■□□ 2.63
CBWD5-233	ENST00000497250	RIMBP3	Q9UFD9	1639 aa		31.5	■■■□□ 2.63
CBWD5-233	ENST00000497250	ZNF608	Q9ULD9	1512 aa	Predicted RBP	31.49	■■■□□ 2.63
CBWD5-233	ENST00000497250	IFT140	Q96RY7	1462 aa		31.42	■■■□□ 2.62
CBWD5-233	ENST00000497250	ARHGEF11	O15085	1522 aa		31.39	■■■□□ 2.62
CBWD5-233	ENST00000497250	CYB5RL	Q6IPT4	315 aa		31.37	■■■□□ 2.61
CBWD5-233	ENST00000497250	CCDC88B	A6NC98	1476 aa		31.32	■■■□□ 2.6
CBWD5-233	ENST00000497250	TOPBP1	Q92547	1522 aa		31.28	■■■□□ 2.6
CBWD5-233	ENST00000497250	TRH	P20396	242 aa	Predicted RBP	31.18	■■■□□ 2.58
CBWD5-233	ENST00000497250	AQR	O60306	1485 aa	Known RBP eCLIP	31.18	■■■□□ 2.58
CBWD5-233	ENST00000497250	PRDM2	Q13029	1718 aa		31.18	■■■□□ 2.58
CBWD5-233	ENST00000497250	ABCC8	Q09428	1581 aa		31.15	■■■□□ 2.58
CBWD5-233	ENST00000497250	FBLN2	P98095	1184 aa		31.13	■■■□□ 2.57
CBWD5-233	ENST00000497250	EIF4G3	O43432	1585 aa	Known RBP	31.12	■■■□□ 2.57
CBWD5-233	ENST00000497250	ARAP1	Q96P48	1450 aa		31.07	■■■□□ 2.56
CBWD5-233	ENST00000497250	DNMBP	Q6XZF7	1577 aa		31.04	■■■□□ 2.56
CBWD5-233	ENST00000497250	TARBP1	Q13395	1621 aa	Known RBP	31	■■■□□ 2.55
CBWD5-233	ENST00000497250	CHD1	O14646	1710 aa		30.96	■■■□□ 2.55
CBWD5-233	ENST00000497250	POLA1	P09884	1462 aa	Predicted RBP	30.94	■■■□□ 2.54
CBWD5-233	ENST00000497250	TDRD9	Q8NDG6	1382 aa	Known RBP	30.91	■■■□□ 2.54
CBWD5-233	ENST00000497250	RAD54L2	Q9Y4B4	1467 aa		30.91	■■■□□ 2.54
CBWD5-233	ENST00000497250	SOGA1	O94964	1423 aa		30.86	■■■□□ 2.53
CBWD5-233	ENST00000497250	CHMP7	Q8WUX9	453 aa	Predicted RBP	30.79	■■■□□ 2.52
CBWD5-233	ENST00000497250	SNAPC4	Q5SXM2	1469 aa		30.74	■■■□□ 2.51
CBWD5-233	ENST00000497250	CLASP1	Q7Z460	1538 aa		30.69	■■■□□ 2.5
CBWD5-233	ENST00000497250	AEBP2	Q6ZN18	517 aa	Predicted RBP	30.67	■■■□□ 2.5
CBWD5-233	ENST00000497250	FGD5	Q6ZNL6	1462 aa		30.65	■■■□□ 2.5
CBWD5-233	ENST00000497250	MAGI1	Q96QZ7	1491 aa	Predicted RBP	30.6	■■■□□ 2.49
CBWD5-233	ENST00000497250	GRIN2B	Q13224	1484 aa		30.58	■■■□□ 2.49
CBWD5-233	ENST00000497250	SYNJ1	O43426	1573 aa		30.58	■■■□□ 2.49
CBWD5-233	ENST00000497250	CUX1	P39880	1505 aa		30.54	■■■□□ 2.48
CBWD5-233	ENST00000497250	SYNJ2	O15056	1496 aa		30.54	■■■□□ 2.48
CBWD5-233	ENST00000497250	WDR97	A6NE52	1622 aa		30.54	■■■□□ 2.48
CBWD5-233	ENST00000497250	GAPVD1	Q14C86	1478 aa		30.47	■■■□□ 2.47
CBWD5-233	ENST00000497250	ABCA10	Q8WWZ4	1543 aa		30.27	■■■□□ 2.44
CBWD5-233	ENST00000497250	ERCC6L2	Q5T890	1561 aa		30.25	■■■□□ 2.43
CBWD5-233	ENST00000497250	PBRM1	Q86U86	1689 aa		30.24	■■■□□ 2.43
CBWD5-233	ENST00000497250	ABCA5	Q8WWZ7	1642 aa		30.18	■■■□□ 2.42
CBWD5-233	ENST00000497250	GRIN2A	Q12879	1464 aa		30.17	■■■□□ 2.42
CBWD5-233	ENST00000497250	NUP160	Q12769	1436 aa		30.12	■■■□□ 2.41
CBWD5-233	ENST00000497250	CEP170	Q5SW79	1584 aa		30.1	■■■□□ 2.41
CBWD5-233	ENST00000497250	WRN	Q14191	1432 aa	Predicted RBP eCLIP	30.07	■■■□□ 2.4
CBWD5-233	ENST00000497250	FHAD1	B1AJZ9	1412 aa		30	■■■□□ 2.39
CBWD5-233	ENST00000497250	ADAMTS12	P58397	1594 aa		29.99	■■■□□ 2.39
CBWD5-233	ENST00000497250	JPH4	Q96JJ6	628 aa		29.96	■■■□□ 2.39
CBWD5-233	ENST00000497250	SHROOM2	Q13796	1616 aa		29.95	■■■□□ 2.38
CBWD5-233	ENST00000497250	SUPT5H	O00267	1087 aa	Known RBP	29.93	■■■□□ 2.38
CBWD5-233	ENST00000497250	PRG4	Q92954	1404 aa	Predicted RBP	29.92	■■■□□ 2.38
CBWD5-233	ENST00000497250	FAM69C	Q0P6D2	419 aa		29.88	■■■□□ 2.37
CBWD5-233	ENST00000497250	ERICH3	Q5RHP9	1530 aa		29.83	■■■□□ 2.37
CBWD5-233	ENST00000497250	TOP2B	Q02880	1626 aa		29.82	■■■□□ 2.36
CBWD5-233	ENST00000497250	KIF13A	Q9H1H9	1805 aa		29.82	■■■□□ 2.36

Retrieved 100 of 20,778 RNA–protein pairs in 72 ms