RNA–Protein interactions for RNA: ENST00000497091.1

PBX3-211, Transcript of PBX homeobox 3, humanhuman

TSL 5

Gene PBX3, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PBX3-211ENST00000497091 NISCHQ9Y2I1 1504 aa45.69■■■■■ 4.9
PBX3-211ENST00000497091 CCDC180Q9P1Z9 1646 aa40.39■■■■■ 4.06
PBX3-211ENST00000497091 ABCC9O60706 1549 aa39.55■■■■□ 3.92
PBX3-211ENST00000497091 DCAF8L2P0C7V8 631 aa38.39■■■■□ 3.74
PBX3-211ENST00000497091 NACADO15069 1562 aa38.06■■■■□ 3.68
PBX3-211ENST00000497091 RB1CC1Q8TDY2 1594 aa38.05■■■■□ 3.68
PBX3-211ENST00000497091 ZCCHC6Q5VYS8 1495 aaKnown RBP38.04■■■■□ 3.68
PBX3-211ENST00000497091 MYO15BQ96JP2 1530 aa37.87■■■■□ 3.65
PBX3-211ENST00000497091 DCAF1Q9Y4B6 1507 aa37.77■■■■□ 3.64
PBX3-211ENST00000497091 PABPN1Q86U42 306 aaKnown RBP eCLIP37.12■■■■□ 3.53
PBX3-211ENST00000497091 DNAJC5BQ9UF47 199 aa37.02■■■■□ 3.52
PBX3-211ENST00000497091 UNC13AQ9UPW8 1703 aa37■■■■□ 3.51
PBX3-211ENST00000497091 SCRIBQ14160 1630 aa36.96■■■■□ 3.51
PBX3-211ENST00000497091 BICRAQ9NZM4 1560 aa36.86■■■■□ 3.49
PBX3-211ENST00000497091 SHROOM4Q9ULL8 1493 aa36.49■■■■□ 3.43
PBX3-211ENST00000497091 EIF4G1Q04637 1599 aaKnown RBP35.89■■■■□ 3.34
PBX3-211ENST00000497091 CC2D2AQ9P2K1 1620 aa35.71■■■■□ 3.31
PBX3-211ENST00000497091 CECR2Q9BXF3 1484 aa35.6■■■■□ 3.29
PBX3-211ENST00000497091 BAZ1AQ9NRL2 1556 aaPredicted RBP35.38■■■■□ 3.25
PBX3-211ENST00000497091 SMARCA4P51532 1647 aa35.35■■■■□ 3.25
PBX3-211ENST00000497091 MROH2BQ7Z745 1585 aa35.21■■■■□ 3.23
PBX3-211ENST00000497091 ATAD2BQ9ULI0 1458 aa35.21■■■■□ 3.23
PBX3-211ENST00000497091 NCAPD3P42695 1498 aa35.19■■■■□ 3.22
PBX3-211ENST00000497091 SMARCA2P51531 1590 aa35.14■■■■□ 3.22
PBX3-211ENST00000497091 PEG3Q9GZU2 1588 aa34.99■■■■□ 3.19
PBX3-211ENST00000497091 RSF1Q96T23 1441 aaPredicted RBP34.93■■■■□ 3.18
PBX3-211ENST00000497091 BAZ1BQ9UIG0 1483 aaKnown RBP34.92■■■■□ 3.18
PBX3-211ENST00000497091 HMGXB3Q12766 1538 aa34.91■■■■□ 3.18
PBX3-211ENST00000497091 WIZO95785 1651 aa34.79■■■■□ 3.16
PBX3-211ENST00000497091 TOP2AP11388 1531 aaKnown RBP34.44■■■■□ 3.1
PBX3-211ENST00000497091 SUPT5HO00267 1087 aaKnown RBP34.34■■■■□ 3.09
PBX3-211ENST00000497091 NESP48681 1621 aa34.26■■■■□ 3.07
PBX3-211ENST00000497091 CADPSQ9ULU8 1353 aa34.22■■■■□ 3.07
PBX3-211ENST00000497091 LAMC3Q9Y6N6 1575 aa34.15■■■■□ 3.06
PBX3-211ENST00000497091 CCDC88BA6NC98 1476 aa34.13■■■■□ 3.05
PBX3-211ENST00000497091 ERCC6Q03468 1493 aa34.1■■■■□ 3.05
PBX3-211ENST00000497091 DNAJC5Q9H3Z4 198 aa34.1■■■■□ 3.05
PBX3-211ENST00000497091 PDS5BQ9NTI5 1447 aa34.04■■■■□ 3.04
PBX3-211ENST00000497091 CUX2O14529 1486 aa34.03■■■■□ 3.04
PBX3-211ENST00000497091 CFTRP13569 1480 aa33.99■■■■□ 3.03
PBX3-211ENST00000497091 FANCD2Q9BXW9 1451 aa33.76■■■■□ 3
PBX3-211ENST00000497091 KIF21AQ7Z4S6 1674 aa33.71■■■□□ 2.99
PBX3-211ENST00000497091 CEP164Q9UPV0 1460 aa33.69■■■□□ 2.98
PBX3-211ENST00000497091 MRC2Q9UBG0 1479 aa33.6■■■□□ 2.97
PBX3-211ENST00000497091 THOC2Q8NI27 1593 aaKnown RBP33.56■■■□□ 2.96
PBX3-211ENST00000497091 PRDM2Q13029 1718 aa33.48■■■□□ 2.95
PBX3-211ENST00000497091 WDR62O43379 1518 aa33.42■■■□□ 2.94
PBX3-211ENST00000497091 URB2Q14146 1524 aaKnown RBP33.38■■■□□ 2.93
PBX3-211ENST00000497091 ABCC8Q09428 1581 aa33.27■■■□□ 2.92
PBX3-211ENST00000497091 TOPBP1Q92547 1522 aa33.21■■■□□ 2.91
PBX3-211ENST00000497091 DNMBPQ6XZF7 1577 aa33.15■■■□□ 2.9
PBX3-211ENST00000497091 CUX1P39880 1505 aa33.02■■■□□ 2.88
PBX3-211ENST00000497091 IFT140Q96RY7 1462 aa32.99■■■□□ 2.87
PBX3-211ENST00000497091 POLA1P09884 1462 aaPredicted RBP32.94■■■□□ 2.86
PBX3-211ENST00000497091 WRNQ14191 1432 aaPredicted RBP eCLIP32.94■■■□□ 2.86
PBX3-211ENST00000497091 SOGA1O94964 1423 aa32.92■■■□□ 2.86
PBX3-211ENST00000497091 FGD5Q6ZNL6 1462 aa32.89■■■□□ 2.86
PBX3-211ENST00000497091 RAD54L2Q9Y4B4 1467 aa32.85■■■□□ 2.85
PBX3-211ENST00000497091 ZNF608Q9ULD9 1512 aaPredicted RBP32.82■■■□□ 2.84
PBX3-211ENST00000497091 TARBP1Q13395 1621 aaKnown RBP32.77■■■□□ 2.84
PBX3-211ENST00000497091 TOP2BQ02880 1626 aa32.74■■■□□ 2.83
PBX3-211ENST00000497091 SYNJ1O43426 1573 aa32.73■■■□□ 2.83
PBX3-211ENST00000497091 AQRO60306 1485 aaKnown RBP eCLIP32.72■■■□□ 2.83
PBX3-211ENST00000497091 TDRD9Q8NDG6 1382 aaKnown RBP32.71■■■□□ 2.83
PBX3-211ENST00000497091 BIVM-ERCC5R4GMW8 1640 aa32.68■■■□□ 2.82
PBX3-211ENST00000497091 EIF4G3O43432 1585 aaKnown RBP32.58■■■□□ 2.81
PBX3-211ENST00000497091 ABCA10Q8WWZ4 1543 aa32.58■■■□□ 2.81
PBX3-211ENST00000497091 OSCARQ8IYS5 282 aa32.51■■■□□ 2.79
PBX3-211ENST00000497091 WDR97A6NE52 1622 aa32.51■■■□□ 2.79
PBX3-211ENST00000497091 GAPVD1Q14C86 1478 aa32.48■■■□□ 2.79
PBX3-211ENST00000497091 TRIM41Q8WV44 630 aa32.47■■■□□ 2.79
PBX3-211ENST00000497091 GRIN2BQ13224 1484 aa32.45■■■□□ 2.79
PBX3-211ENST00000497091 FBLN2P98095 1184 aa32.42■■■□□ 2.78
PBX3-211ENST00000497091 SNAPC4Q5SXM2 1469 aa32.35■■■□□ 2.77
PBX3-211ENST00000497091 ABCA5Q8WWZ7 1642 aa32.34■■■□□ 2.77
PBX3-211ENST00000497091 CHMP7Q8WUX9 453 aaPredicted RBP32.34■■■□□ 2.77
PBX3-211ENST00000497091 MAGI1Q96QZ7 1491 aaPredicted RBP32.31■■■□□ 2.76
PBX3-211ENST00000497091 KIF27Q86VH2 1401 aa32.26■■■□□ 2.76
PBX3-211ENST00000497091 PBRM1Q86U86 1689 aa32.21■■■□□ 2.75
PBX3-211ENST00000497091 SYNJ2O15056 1496 aa32.2■■■□□ 2.75
PBX3-211ENST00000497091 ERICH3Q5RHP9 1530 aa32.18■■■□□ 2.74
PBX3-211ENST00000497091 IGF1RP08069 1367 aa32.15■■■□□ 2.74
PBX3-211ENST00000497091 FHAD1B1AJZ9 1412 aa32.12■■■□□ 2.73
PBX3-211ENST00000497091 CHIC1Q5VXU3 224 aa32.11■■■□□ 2.73
PBX3-211ENST00000497091 CHD1O14646 1710 aa32.1■■■□□ 2.73
PBX3-211ENST00000497091 ADAMTS12P58397 1594 aa32.02■■■□□ 2.72
PBX3-211ENST00000497091 GRIN2AQ12879 1464 aa32■■■□□ 2.71
PBX3-211ENST00000497091 RUSC2Q8N2Y8 1516 aa31.99■■■□□ 2.71
PBX3-211ENST00000497091 RIMBP3CA6NJZ7 1639 aa31.98■■■□□ 2.71
PBX3-211ENST00000497091 RIMBP3BA6NNM3 1639 aa31.98■■■□□ 2.71
PBX3-211ENST00000497091 RIMBP3Q9UFD9 1639 aa31.98■■■□□ 2.71
PBX3-211ENST00000497091 CARMIL1Q5VZK9 1371 aa31.95■■■□□ 2.71
PBX3-211ENST00000497091 ARHGEF11O15085 1522 aa31.89■■■□□ 2.7
PBX3-211ENST00000497091 CUL7Q14999 1698 aa31.86■■■□□ 2.69
PBX3-211ENST00000497091 NUP160Q12769 1436 aa31.85■■■□□ 2.69
PBX3-211ENST00000497091 CLASP1Q7Z460 1538 aa31.83■■■□□ 2.69
PBX3-211ENST00000497091 CSRNP3Q8WYN3 585 aa31.8■■■□□ 2.68
PBX3-211ENST00000497091 CEP170Q5SW79 1584 aa31.77■■■□□ 2.68
PBX3-211ENST00000497091 FAM9AQ8IZU1 332 aaPredicted RBP31.76■■■□□ 2.67
PBX3-211ENST00000497091 EEA1Q15075 1411 aa31.74■■■□□ 2.67
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms