RNA–Protein interactions for RNA: ENST00000496136.5

ECHDC3-205, Transcript of enoyl-CoA hydratase domain containing 3, humanhuman

TSL 1 (best)

Gene ECHDC3, Length 1,767 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3-205ENST00000496136 NISCHQ9Y2I1 1504 aa51.25■■■■■ 5.79
ECHDC3-205ENST00000496136 CCDC180Q9P1Z9 1646 aa45.08■■■■■ 4.81
ECHDC3-205ENST00000496136 ABCC9O60706 1549 aa43.39■■■■■ 4.54
ECHDC3-205ENST00000496136 ZCCHC6Q5VYS8 1495 aaKnown RBP42.84■■■■■ 4.45
ECHDC3-205ENST00000496136 DCAF8L2P0C7V8 631 aa42.61■■■■■ 4.41
ECHDC3-205ENST00000496136 DCAF1Q9Y4B6 1507 aa42.39■■■■■ 4.38
ECHDC3-205ENST00000496136 MYO15BQ96JP2 1530 aa42.24■■■■■ 4.35
ECHDC3-205ENST00000496136 NACADO15069 1562 aa42.22■■■■■ 4.35
ECHDC3-205ENST00000496136 RB1CC1Q8TDY2 1594 aa42.05■■■■■ 4.32
ECHDC3-205ENST00000496136 SCRIBQ14160 1630 aa41.28■■■■■ 4.2
ECHDC3-205ENST00000496136 UNC13AQ9UPW8 1703 aa41.16■■■■■ 4.18
ECHDC3-205ENST00000496136 SHROOM4Q9ULL8 1493 aa41.12■■■■■ 4.17
ECHDC3-205ENST00000496136 BICRAQ9NZM4 1560 aa40.8■■■■■ 4.12
ECHDC3-205ENST00000496136 PABPN1Q86U42 306 aaKnown RBP eCLIP40.77■■■■■ 4.12
ECHDC3-205ENST00000496136 CECR2Q9BXF3 1484 aa39.88■■■■□ 3.97
ECHDC3-205ENST00000496136 EIF4G1Q04637 1599 aaKnown RBP39.63■■■■□ 3.94
ECHDC3-205ENST00000496136 BAZ1AQ9NRL2 1556 aaPredicted RBP39.63■■■■□ 3.93
ECHDC3-205ENST00000496136 SMARCA4P51532 1647 aa39.55■■■■□ 3.92
ECHDC3-205ENST00000496136 MROH2BQ7Z745 1585 aa39.54■■■■□ 3.92
ECHDC3-205ENST00000496136 RSF1Q96T23 1441 aaPredicted RBP39.42■■■■□ 3.9
ECHDC3-205ENST00000496136 CC2D2AQ9P2K1 1620 aa39.27■■■■□ 3.88
ECHDC3-205ENST00000496136 SUPT5HO00267 1087 aaKnown RBP39.17■■■■□ 3.86
ECHDC3-205ENST00000496136 WIZO95785 1651 aa39.16■■■■□ 3.86
ECHDC3-205ENST00000496136 DNAJC5BQ9UF47 199 aa39.16■■■■□ 3.86
ECHDC3-205ENST00000496136 ATAD2BQ9ULI0 1458 aa39.15■■■■□ 3.86
ECHDC3-205ENST00000496136 PEG3Q9GZU2 1588 aa39.14■■■■□ 3.86
ECHDC3-205ENST00000496136 SMARCA2P51531 1590 aa39.1■■■■□ 3.85
ECHDC3-205ENST00000496136 NCAPD3P42695 1498 aa38.99■■■■□ 3.83
ECHDC3-205ENST00000496136 BAZ1BQ9UIG0 1483 aaKnown RBP38.86■■■■□ 3.81
ECHDC3-205ENST00000496136 HMGXB3Q12766 1538 aa38.82■■■■□ 3.8
ECHDC3-205ENST00000496136 TOP2AP11388 1531 aaKnown RBP38.73■■■■□ 3.79
ECHDC3-205ENST00000496136 CCDC88BA6NC98 1476 aa38.34■■■■□ 3.73
ECHDC3-205ENST00000496136 CADPSQ9ULU8 1353 aa37.93■■■■□ 3.66
ECHDC3-205ENST00000496136 CFTRP13569 1480 aa37.86■■■■□ 3.65
ECHDC3-205ENST00000496136 NESP48681 1621 aa37.83■■■■□ 3.65
ECHDC3-205ENST00000496136 LAMC3Q9Y6N6 1575 aa37.78■■■■□ 3.64
ECHDC3-205ENST00000496136 PRDM2Q13029 1718 aa37.57■■■■□ 3.61
ECHDC3-205ENST00000496136 PDS5BQ9NTI5 1447 aa37.53■■■■□ 3.6
ECHDC3-205ENST00000496136 FANCD2Q9BXW9 1451 aa37.47■■■■□ 3.59
ECHDC3-205ENST00000496136 KIF21AQ7Z4S6 1674 aa37.35■■■■□ 3.57
ECHDC3-205ENST00000496136 CEP164Q9UPV0 1460 aa37.31■■■■□ 3.56
ECHDC3-205ENST00000496136 ERCC6Q03468 1493 aa37.3■■■■□ 3.56
ECHDC3-205ENST00000496136 ABCC8Q09428 1581 aa37.22■■■■□ 3.55
ECHDC3-205ENST00000496136 WRNQ14191 1432 aaPredicted RBP eCLIP37.12■■■■□ 3.53
ECHDC3-205ENST00000496136 MRC2Q9UBG0 1479 aa37.07■■■■□ 3.52
ECHDC3-205ENST00000496136 CHIC1Q5VXU3 224 aa37.06■■■■□ 3.52
ECHDC3-205ENST00000496136 URB2Q14146 1524 aaKnown RBP37.04■■■■□ 3.52
ECHDC3-205ENST00000496136 CUX1P39880 1505 aa37.02■■■■□ 3.52
ECHDC3-205ENST00000496136 THOC2Q8NI27 1593 aaKnown RBP36.97■■■■□ 3.51
ECHDC3-205ENST00000496136 SYNJ1O43426 1573 aa36.97■■■■□ 3.51
ECHDC3-205ENST00000496136 TOPBP1Q92547 1522 aa36.96■■■■□ 3.51
ECHDC3-205ENST00000496136 DNMBPQ6XZF7 1577 aa36.96■■■■□ 3.51
ECHDC3-205ENST00000496136 TRIM41Q8WV44 630 aa36.92■■■■□ 3.5
ECHDC3-205ENST00000496136 TOP2BQ02880 1626 aa36.92■■■■□ 3.5
ECHDC3-205ENST00000496136 WDR62O43379 1518 aa36.91■■■■□ 3.5
ECHDC3-205ENST00000496136 BIVM-ERCC5R4GMW8 1640 aa36.88■■■■□ 3.49
ECHDC3-205ENST00000496136 FGD5Q6ZNL6 1462 aa36.75■■■■□ 3.47
ECHDC3-205ENST00000496136 POLA1P09884 1462 aaPredicted RBP36.71■■■■□ 3.47
ECHDC3-205ENST00000496136 CUX2O14529 1486 aa36.62■■■■□ 3.45
ECHDC3-205ENST00000496136 SOGA1O94964 1423 aa36.61■■■■□ 3.45
ECHDC3-205ENST00000496136 RAD54L2Q9Y4B4 1467 aa36.58■■■■□ 3.45
ECHDC3-205ENST00000496136 IFT140Q96RY7 1462 aa36.49■■■■□ 3.43
ECHDC3-205ENST00000496136 TARBP1Q13395 1621 aaKnown RBP36.49■■■■□ 3.43
ECHDC3-205ENST00000496136 ABCA10Q8WWZ4 1543 aa36.43■■■■□ 3.42
ECHDC3-205ENST00000496136 WDR97A6NE52 1622 aa36.35■■■■□ 3.41
ECHDC3-205ENST00000496136 TDRD9Q8NDG6 1382 aaKnown RBP36.33■■■■□ 3.41
ECHDC3-205ENST00000496136 ZNF608Q9ULD9 1512 aaPredicted RBP36.31■■■■□ 3.4
ECHDC3-205ENST00000496136 RUSC2Q8N2Y8 1516 aa36.28■■■■□ 3.4
ECHDC3-205ENST00000496136 KIF27Q86VH2 1401 aa36.27■■■■□ 3.4
ECHDC3-205ENST00000496136 AQRO60306 1485 aaKnown RBP eCLIP36.24■■■■□ 3.39
ECHDC3-205ENST00000496136 FAM9AQ8IZU1 332 aaPredicted RBP36.18■■■■□ 3.38
ECHDC3-205ENST00000496136 GAPVD1Q14C86 1478 aa36.18■■■■□ 3.38
ECHDC3-205ENST00000496136 ABCA5Q8WWZ7 1642 aa36.18■■■■□ 3.38
ECHDC3-205ENST00000496136 DNAJC5Q9H3Z4 198 aa36.17■■■■□ 3.38
ECHDC3-205ENST00000496136 EIF4G3O43432 1585 aaKnown RBP36.14■■■■□ 3.38
ECHDC3-205ENST00000496136 EEA1Q15075 1411 aa36.13■■■■□ 3.37
ECHDC3-205ENST00000496136 IGF1RP08069 1367 aa36.07■■■■□ 3.36
ECHDC3-205ENST00000496136 CSRNP3Q8WYN3 585 aa36.06■■■■□ 3.36
ECHDC3-205ENST00000496136 GRIN2BQ13224 1484 aa36.03■■■■□ 3.36
ECHDC3-205ENST00000496136 PBRM1Q86U86 1689 aa35.99■■■■□ 3.35
ECHDC3-205ENST00000496136 ERICH3Q5RHP9 1530 aa35.99■■■■□ 3.35
ECHDC3-205ENST00000496136 SNAPC4Q5SXM2 1469 aa35.86■■■■□ 3.33
ECHDC3-205ENST00000496136 CARMIL1Q5VZK9 1371 aa35.85■■■■□ 3.33
ECHDC3-205ENST00000496136 MAGI1Q96QZ7 1491 aaPredicted RBP35.83■■■■□ 3.33
ECHDC3-205ENST00000496136 CUL7Q14999 1698 aa35.81■■■■□ 3.32
ECHDC3-205ENST00000496136 PRXQ9BXM0 1461 aa35.8■■■■□ 3.32
ECHDC3-205ENST00000496136 FHAD1B1AJZ9 1412 aa35.78■■■■□ 3.32
ECHDC3-205ENST00000496136 ADAMTS12P58397 1594 aa35.76■■■■□ 3.31
ECHDC3-205ENST00000496136 RAPGEF2Q9Y4G8 1499 aa35.7■■■■□ 3.31
ECHDC3-205ENST00000496136 SYNJ2O15056 1496 aa35.7■■■■□ 3.3
ECHDC3-205ENST00000496136 CHMP7Q8WUX9 453 aaPredicted RBP35.69■■■■□ 3.3
ECHDC3-205ENST00000496136 KIF21BO75037 1637 aa35.68■■■■□ 3.3
ECHDC3-205ENST00000496136 FBLN2P98095 1184 aa35.67■■■■□ 3.3
ECHDC3-205ENST00000496136 EHMT2Q96KQ7 1210 aa35.66■■■■□ 3.3
ECHDC3-205ENST00000496136 LOC105371045A0A1W2PR82 267 aa35.6■■■■□ 3.29
ECHDC3-205ENST00000496136 GRIN2AQ12879 1464 aa35.58■■■■□ 3.29
ECHDC3-205ENST00000496136 GOLGA3Q08378 1498 aa35.55■■■■□ 3.28
ECHDC3-205ENST00000496136 CHD1O14646 1710 aa35.53■■■■□ 3.28
ECHDC3-205ENST00000496136 UBTFP17480 764 aaKnown RBP35.49■■■■□ 3.27
ECHDC3-205ENST00000496136 NUP160Q12769 1436 aa35.38■■■■□ 3.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms