RNA–Protein interactions for RNA: ENST00000496024.1

CALD1-223, Transcript of caldesmon 1, humanhuman

TSL 4

Gene CALD1, Length 557 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALD1-223ENST00000496024 NISCHQ9Y2I1 1504 aa23.68■■□□□ 1.38
CALD1-223ENST00000496024 CCDC180Q9P1Z9 1646 aa21■□□□□ 0.95
CALD1-223ENST00000496024 ABCC9O60706 1549 aa20.61■□□□□ 0.89
CALD1-223ENST00000496024 DCAF8L2P0C7V8 631 aa19.93■□□□□ 0.78
CALD1-223ENST00000496024 RB1CC1Q8TDY2 1594 aa19.77■□□□□ 0.76
CALD1-223ENST00000496024 NACADO15069 1562 aa19.74■□□□□ 0.75
CALD1-223ENST00000496024 ZCCHC6Q5VYS8 1495 aaKnown RBP19.71■□□□□ 0.75
CALD1-223ENST00000496024 MYO15BQ96JP2 1530 aa19.57■□□□□ 0.72
CALD1-223ENST00000496024 DCAF1Q9Y4B6 1507 aa19.52■□□□□ 0.72
CALD1-223ENST00000496024 UNC13AQ9UPW8 1703 aa19.36■□□□□ 0.69
CALD1-223ENST00000496024 PABPN1Q86U42 306 aaKnown RBP eCLIP19.3■□□□□ 0.68
CALD1-223ENST00000496024 SCRIBQ14160 1630 aa19.25■□□□□ 0.67
CALD1-223ENST00000496024 BICRAQ9NZM4 1560 aa19.18■□□□□ 0.66
CALD1-223ENST00000496024 DNAJC5BQ9UF47 199 aa18.89■□□□□ 0.61
CALD1-223ENST00000496024 SHROOM4Q9ULL8 1493 aa18.89■□□□□ 0.61
CALD1-223ENST00000496024 EIF4G1Q04637 1599 aaKnown RBP18.68■□□□□ 0.58
CALD1-223ENST00000496024 CC2D2AQ9P2K1 1620 aa18.6■□□□□ 0.57
CALD1-223ENST00000496024 CECR2Q9BXF3 1484 aa18.48■□□□□ 0.55
CALD1-223ENST00000496024 SMARCA4P51532 1647 aa18.37■□□□□ 0.53
CALD1-223ENST00000496024 BAZ1AQ9NRL2 1556 aaPredicted RBP18.34■□□□□ 0.53
CALD1-223ENST00000496024 MROH2BQ7Z745 1585 aa18.28■□□□□ 0.52
CALD1-223ENST00000496024 ATAD2BQ9ULI0 1458 aa18.25■□□□□ 0.51
CALD1-223ENST00000496024 SMARCA2P51531 1590 aa18.22■□□□□ 0.51
CALD1-223ENST00000496024 NCAPD3P42695 1498 aa18.21■□□□□ 0.51
CALD1-223ENST00000496024 BAZ1BQ9UIG0 1483 aaKnown RBP18.13■□□□□ 0.49
CALD1-223ENST00000496024 PEG3Q9GZU2 1588 aa18.13■□□□□ 0.49
CALD1-223ENST00000496024 HMGXB3Q12766 1538 aa18.12■□□□□ 0.49
CALD1-223ENST00000496024 WIZO95785 1651 aa18.1■□□□□ 0.49
CALD1-223ENST00000496024 RSF1Q96T23 1441 aaPredicted RBP18.07■□□□□ 0.48
CALD1-223ENST00000496024 TOP2AP11388 1531 aaKnown RBP17.87■□□□□ 0.45
CALD1-223ENST00000496024 NESP48681 1621 aa17.84■□□□□ 0.45
CALD1-223ENST00000496024 SUPT5HO00267 1087 aaKnown RBP17.77■□□□□ 0.44
CALD1-223ENST00000496024 ERCC6Q03468 1493 aa17.75■□□□□ 0.43
CALD1-223ENST00000496024 LAMC3Q9Y6N6 1575 aa17.74■□□□□ 0.43
CALD1-223ENST00000496024 CADPSQ9ULU8 1353 aa17.71■□□□□ 0.43
CALD1-223ENST00000496024 CCDC88BA6NC98 1476 aa17.69■□□□□ 0.42
CALD1-223ENST00000496024 PDS5BQ9NTI5 1447 aa17.64■□□□□ 0.41
CALD1-223ENST00000496024 KIF21AQ7Z4S6 1674 aa17.62■□□□□ 0.41
CALD1-223ENST00000496024 CFTRP13569 1480 aa17.59■□□□□ 0.41
CALD1-223ENST00000496024 FANCD2Q9BXW9 1451 aa17.52■□□□□ 0.4
CALD1-223ENST00000496024 THOC2Q8NI27 1593 aaKnown RBP17.5■□□□□ 0.39
CALD1-223ENST00000496024 CEP164Q9UPV0 1460 aa17.5■□□□□ 0.39
CALD1-223ENST00000496024 PRDM2Q13029 1718 aa17.48■□□□□ 0.39
CALD1-223ENST00000496024 CUX2O14529 1486 aa17.48■□□□□ 0.39
CALD1-223ENST00000496024 MRC2Q9UBG0 1479 aa17.45■□□□□ 0.38
CALD1-223ENST00000496024 WDR62O43379 1518 aa17.37■□□□□ 0.37
CALD1-223ENST00000496024 URB2Q14146 1524 aaKnown RBP17.35■□□□□ 0.37
CALD1-223ENST00000496024 TOPBP1Q92547 1522 aa17.25■□□□□ 0.35
CALD1-223ENST00000496024 DNMBPQ6XZF7 1577 aa17.22■□□□□ 0.35
CALD1-223ENST00000496024 ABCC8Q09428 1581 aa17.21■□□□□ 0.35
CALD1-223ENST00000496024 CUX1P39880 1505 aa17.14■□□□□ 0.33
CALD1-223ENST00000496024 IFT140Q96RY7 1462 aa17.11■□□□□ 0.33
CALD1-223ENST00000496024 POLA1P09884 1462 aaPredicted RBP17.1■□□□□ 0.33
CALD1-223ENST00000496024 FGD5Q6ZNL6 1462 aa17.08■□□□□ 0.32
CALD1-223ENST00000496024 ZNF608Q9ULD9 1512 aaPredicted RBP17.07■□□□□ 0.32
CALD1-223ENST00000496024 RAD54L2Q9Y4B4 1467 aa17.07■□□□□ 0.32
CALD1-223ENST00000496024 SOGA1O94964 1423 aa17.05■□□□□ 0.32
CALD1-223ENST00000496024 WRNQ14191 1432 aaPredicted RBP eCLIP17.04■□□□□ 0.32
CALD1-223ENST00000496024 TARBP1Q13395 1621 aaKnown RBP17.03■□□□□ 0.32
CALD1-223ENST00000496024 SYNJ1O43426 1573 aa17.01■□□□□ 0.31
CALD1-223ENST00000496024 AQRO60306 1485 aaKnown RBP eCLIP16.99■□□□□ 0.31
CALD1-223ENST00000496024 TDRD9Q8NDG6 1382 aaKnown RBP16.99■□□□□ 0.31
CALD1-223ENST00000496024 EIF4G3O43432 1585 aaKnown RBP16.98■□□□□ 0.31
CALD1-223ENST00000496024 TOP2BQ02880 1626 aa16.98■□□□□ 0.31
CALD1-223ENST00000496024 BIVM-ERCC5R4GMW8 1640 aa16.97■□□□□ 0.31
CALD1-223ENST00000496024 DNAJC5Q9H3Z4 198 aa16.95■□□□□ 0.3
CALD1-223ENST00000496024 WDR97A6NE52 1622 aa16.9■□□□□ 0.3
CALD1-223ENST00000496024 ABCA10Q8WWZ4 1543 aa16.88■□□□□ 0.29
CALD1-223ENST00000496024 FBLN2P98095 1184 aa16.85■□□□□ 0.29
CALD1-223ENST00000496024 GAPVD1Q14C86 1478 aa16.85■□□□□ 0.29
CALD1-223ENST00000496024 GRIN2BQ13224 1484 aa16.82■□□□□ 0.28
CALD1-223ENST00000496024 SNAPC4Q5SXM2 1469 aa16.82■□□□□ 0.28
CALD1-223ENST00000496024 OSCARQ8IYS5 282 aa16.82■□□□□ 0.28
CALD1-223ENST00000496024 PBRM1Q86U86 1689 aa16.81■□□□□ 0.28
CALD1-223ENST00000496024 ABCA5Q8WWZ7 1642 aa16.81■□□□□ 0.28
CALD1-223ENST00000496024 CHD1O14646 1710 aa16.79■□□□□ 0.28
CALD1-223ENST00000496024 MAGI1Q96QZ7 1491 aaPredicted RBP16.76■□□□□ 0.27
CALD1-223ENST00000496024 CHMP7Q8WUX9 453 aaPredicted RBP16.76■□□□□ 0.27
CALD1-223ENST00000496024 TRIM41Q8WV44 630 aa16.73■□□□□ 0.27
CALD1-223ENST00000496024 SYNJ2O15056 1496 aa16.71■□□□□ 0.27
CALD1-223ENST00000496024 KIF27Q86VH2 1401 aa16.69■□□□□ 0.26
CALD1-223ENST00000496024 ERICH3Q5RHP9 1530 aa16.67■□□□□ 0.26
CALD1-223ENST00000496024 ADAMTS12P58397 1594 aa16.66■□□□□ 0.26
CALD1-223ENST00000496024 FHAD1B1AJZ9 1412 aa16.63■□□□□ 0.25
CALD1-223ENST00000496024 IGF1RP08069 1367 aa16.61■□□□□ 0.25
CALD1-223ENST00000496024 GRIN2AQ12879 1464 aa16.61■□□□□ 0.25
CALD1-223ENST00000496024 RUSC2Q8N2Y8 1516 aa16.6■□□□□ 0.25
CALD1-223ENST00000496024 CLASP1Q7Z460 1538 aa16.55■□□□□ 0.24
CALD1-223ENST00000496024 CHIC1Q5VXU3 224 aa16.55■□□□□ 0.24
CALD1-223ENST00000496024 CUL7Q14999 1698 aa16.54■□□□□ 0.24
CALD1-223ENST00000496024 RIMBP3CA6NJZ7 1639 aa16.54■□□□□ 0.24
CALD1-223ENST00000496024 RIMBP3BA6NNM3 1639 aa16.54■□□□□ 0.24
CALD1-223ENST00000496024 RIMBP3Q9UFD9 1639 aa16.54■□□□□ 0.24
CALD1-223ENST00000496024 CEP170Q5SW79 1584 aa16.54■□□□□ 0.24
CALD1-223ENST00000496024 CARMIL1Q5VZK9 1371 aa16.53■□□□□ 0.24
CALD1-223ENST00000496024 ARHGEF11O15085 1522 aa16.53■□□□□ 0.24
CALD1-223ENST00000496024 NUP160Q12769 1436 aa16.51■□□□□ 0.23
CALD1-223ENST00000496024 FAM9AQ8IZU1 332 aaPredicted RBP16.46■□□□□ 0.23
CALD1-223ENST00000496024 CYB5RLQ6IPT4 315 aa16.44■□□□□ 0.22
CALD1-223ENST00000496024 RAPGEF2Q9Y4G8 1499 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms