RNA–Protein interactions for RNA: ENST00000495953.2

RAPGEF3-215, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 3

Gene RAPGEF3, Length 648 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-215ENST00000495953 NISCHQ9Y2I1 1504 aa36.68■■■■□ 3.46
RAPGEF3-215ENST00000495953 CCDC180Q9P1Z9 1646 aa32.48■■■□□ 2.79
RAPGEF3-215ENST00000495953 ABCC9O60706 1549 aa31.95■■■□□ 2.7
RAPGEF3-215ENST00000495953 ZCCHC6Q5VYS8 1495 aaKnown RBP30.65■■■□□ 2.5
RAPGEF3-215ENST00000495953 RB1CC1Q8TDY2 1594 aa30.51■■■□□ 2.47
RAPGEF3-215ENST00000495953 DCAF1Q9Y4B6 1507 aa30.44■■■□□ 2.46
RAPGEF3-215ENST00000495953 MYO15BQ96JP2 1530 aa30.41■■■□□ 2.46
RAPGEF3-215ENST00000495953 NACADO15069 1562 aa30.4■■■□□ 2.46
RAPGEF3-215ENST00000495953 DCAF8L2P0C7V8 631 aa30.38■■■□□ 2.45
RAPGEF3-215ENST00000495953 UNC13AQ9UPW8 1703 aa30.07■■■□□ 2.4
RAPGEF3-215ENST00000495953 PABPN1Q86U42 306 aaKnown RBP eCLIP29.79■■■□□ 2.36
RAPGEF3-215ENST00000495953 BICRAQ9NZM4 1560 aa29.74■■■□□ 2.35
RAPGEF3-215ENST00000495953 DNAJC5BQ9UF47 199 aa29.71■■■□□ 2.35
RAPGEF3-215ENST00000495953 SCRIBQ14160 1630 aa29.63■■■□□ 2.33
RAPGEF3-215ENST00000495953 SHROOM4Q9ULL8 1493 aa29.17■■■□□ 2.26
RAPGEF3-215ENST00000495953 EIF4G1Q04637 1599 aaKnown RBP28.91■■■□□ 2.22
RAPGEF3-215ENST00000495953 CC2D2AQ9P2K1 1620 aa28.87■■■□□ 2.21
RAPGEF3-215ENST00000495953 CECR2Q9BXF3 1484 aa28.65■■■□□ 2.18
RAPGEF3-215ENST00000495953 BAZ1AQ9NRL2 1556 aaPredicted RBP28.43■■■□□ 2.14
RAPGEF3-215ENST00000495953 SMARCA4P51532 1647 aa28.36■■■□□ 2.13
RAPGEF3-215ENST00000495953 MROH2BQ7Z745 1585 aa28.24■■■□□ 2.11
RAPGEF3-215ENST00000495953 SMARCA2P51531 1590 aa28.12■■■□□ 2.09
RAPGEF3-215ENST00000495953 PEG3Q9GZU2 1588 aa28.12■■■□□ 2.09
RAPGEF3-215ENST00000495953 RSF1Q96T23 1441 aaPredicted RBP28.09■■■□□ 2.09
RAPGEF3-215ENST00000495953 ATAD2BQ9ULI0 1458 aa28.09■■■□□ 2.09
RAPGEF3-215ENST00000495953 NCAPD3P42695 1498 aa28.03■■■□□ 2.08
RAPGEF3-215ENST00000495953 WIZO95785 1651 aa27.97■■■□□ 2.07
RAPGEF3-215ENST00000495953 HMGXB3Q12766 1538 aa27.94■■■□□ 2.06
RAPGEF3-215ENST00000495953 BAZ1BQ9UIG0 1483 aaKnown RBP27.89■■■□□ 2.05
RAPGEF3-215ENST00000495953 TOP2AP11388 1531 aaKnown RBP27.73■■■□□ 2.03
RAPGEF3-215ENST00000495953 SUPT5HO00267 1087 aaKnown RBP27.68■■■□□ 2.02
RAPGEF3-215ENST00000495953 NESP48681 1621 aa27.63■■■□□ 2.01
RAPGEF3-215ENST00000495953 ERCC6Q03468 1493 aa27.45■■□□□ 1.99
RAPGEF3-215ENST00000495953 CCDC88BA6NC98 1476 aa27.38■■□□□ 1.97
RAPGEF3-215ENST00000495953 LAMC3Q9Y6N6 1575 aa27.37■■□□□ 1.97
RAPGEF3-215ENST00000495953 CUX2O14529 1486 aa27.34■■□□□ 1.97
RAPGEF3-215ENST00000495953 KIF21AQ7Z4S6 1674 aa27.33■■□□□ 1.97
RAPGEF3-215ENST00000495953 THOC2Q8NI27 1593 aaKnown RBP27.24■■□□□ 1.95
RAPGEF3-215ENST00000495953 CADPSQ9ULU8 1353 aa27.22■■□□□ 1.95
RAPGEF3-215ENST00000495953 CFTRP13569 1480 aa27.15■■□□□ 1.94
RAPGEF3-215ENST00000495953 DNAJC5Q9H3Z4 198 aa27.15■■□□□ 1.94
RAPGEF3-215ENST00000495953 PDS5BQ9NTI5 1447 aa27.1■■□□□ 1.93
RAPGEF3-215ENST00000495953 PRDM2Q13029 1718 aa27.07■■□□□ 1.92
RAPGEF3-215ENST00000495953 FANCD2Q9BXW9 1451 aa26.96■■□□□ 1.91
RAPGEF3-215ENST00000495953 MRC2Q9UBG0 1479 aa26.94■■□□□ 1.9
RAPGEF3-215ENST00000495953 CEP164Q9UPV0 1460 aa26.93■■□□□ 1.9
RAPGEF3-215ENST00000495953 WDR62O43379 1518 aa26.9■■□□□ 1.9
RAPGEF3-215ENST00000495953 URB2Q14146 1524 aaKnown RBP26.78■■□□□ 1.88
RAPGEF3-215ENST00000495953 ABCC8Q09428 1581 aa26.63■■□□□ 1.85
RAPGEF3-215ENST00000495953 DNMBPQ6XZF7 1577 aa26.55■■□□□ 1.84
RAPGEF3-215ENST00000495953 TOPBP1Q92547 1522 aa26.54■■□□□ 1.84
RAPGEF3-215ENST00000495953 WRNQ14191 1432 aaPredicted RBP eCLIP26.49■■□□□ 1.83
RAPGEF3-215ENST00000495953 CUX1P39880 1505 aa26.47■■□□□ 1.83
RAPGEF3-215ENST00000495953 TOP2BQ02880 1626 aa26.42■■□□□ 1.82
RAPGEF3-215ENST00000495953 BIVM-ERCC5R4GMW8 1640 aa26.42■■□□□ 1.82
RAPGEF3-215ENST00000495953 ZNF608Q9ULD9 1512 aaPredicted RBP26.39■■□□□ 1.81
RAPGEF3-215ENST00000495953 SYNJ1O43426 1573 aa26.38■■□□□ 1.81
RAPGEF3-215ENST00000495953 IFT140Q96RY7 1462 aa26.34■■□□□ 1.81
RAPGEF3-215ENST00000495953 FGD5Q6ZNL6 1462 aa26.31■■□□□ 1.8
RAPGEF3-215ENST00000495953 POLA1P09884 1462 aaPredicted RBP26.3■■□□□ 1.8
RAPGEF3-215ENST00000495953 TARBP1Q13395 1621 aaKnown RBP26.3■■□□□ 1.8
RAPGEF3-215ENST00000495953 EIF4G3O43432 1585 aaKnown RBP26.28■■□□□ 1.8
RAPGEF3-215ENST00000495953 RAD54L2Q9Y4B4 1467 aa26.24■■□□□ 1.79
RAPGEF3-215ENST00000495953 SOGA1O94964 1423 aa26.22■■□□□ 1.79
RAPGEF3-215ENST00000495953 TRIM41Q8WV44 630 aa26.18■■□□□ 1.78
RAPGEF3-215ENST00000495953 AQRO60306 1485 aaKnown RBP eCLIP26.17■■□□□ 1.78
RAPGEF3-215ENST00000495953 CHIC1Q5VXU3 224 aa26.15■■□□□ 1.78
RAPGEF3-215ENST00000495953 ABCA10Q8WWZ4 1543 aa26.12■■□□□ 1.77
RAPGEF3-215ENST00000495953 WDR97A6NE52 1622 aa26.11■■□□□ 1.77
RAPGEF3-215ENST00000495953 OSCARQ8IYS5 282 aa26.11■■□□□ 1.77
RAPGEF3-215ENST00000495953 TDRD9Q8NDG6 1382 aaKnown RBP26.06■■□□□ 1.76
RAPGEF3-215ENST00000495953 CHD1O14646 1710 aa26.05■■□□□ 1.76
RAPGEF3-215ENST00000495953 ABCA5Q8WWZ7 1642 aa25.96■■□□□ 1.75
RAPGEF3-215ENST00000495953 PBRM1Q86U86 1689 aa25.93■■□□□ 1.74
RAPGEF3-215ENST00000495953 GAPVD1Q14C86 1478 aa25.93■■□□□ 1.74
RAPGEF3-215ENST00000495953 SNAPC4Q5SXM2 1469 aa25.92■■□□□ 1.74
RAPGEF3-215ENST00000495953 KIF27Q86VH2 1401 aa25.92■■□□□ 1.74
RAPGEF3-215ENST00000495953 GRIN2BQ13224 1484 aa25.88■■□□□ 1.73
RAPGEF3-215ENST00000495953 ERICH3Q5RHP9 1530 aa25.83■■□□□ 1.73
RAPGEF3-215ENST00000495953 FBLN2P98095 1184 aa25.82■■□□□ 1.72
RAPGEF3-215ENST00000495953 RIMBP3CA6NJZ7 1639 aa25.8■■□□□ 1.72
RAPGEF3-215ENST00000495953 RIMBP3BA6NNM3 1639 aa25.8■■□□□ 1.72
RAPGEF3-215ENST00000495953 RIMBP3Q9UFD9 1639 aa25.8■■□□□ 1.72
RAPGEF3-215ENST00000495953 EEA1Q15075 1411 aa25.79■■□□□ 1.72
RAPGEF3-215ENST00000495953 MAGI1Q96QZ7 1491 aaPredicted RBP25.78■■□□□ 1.72
RAPGEF3-215ENST00000495953 RUSC2Q8N2Y8 1516 aa25.74■■□□□ 1.71
RAPGEF3-215ENST00000495953 IGF1RP08069 1367 aa25.73■■□□□ 1.71
RAPGEF3-215ENST00000495953 ARHGEF11O15085 1522 aa25.71■■□□□ 1.71
RAPGEF3-215ENST00000495953 CUL7Q14999 1698 aa25.71■■□□□ 1.71
RAPGEF3-215ENST00000495953 SYNJ2O15056 1496 aa25.7■■□□□ 1.7
RAPGEF3-215ENST00000495953 FHAD1B1AJZ9 1412 aa25.67■■□□□ 1.7
RAPGEF3-215ENST00000495953 ADAMTS12P58397 1594 aa25.67■■□□□ 1.7
RAPGEF3-215ENST00000495953 CLASP1Q7Z460 1538 aa25.67■■□□□ 1.7
RAPGEF3-215ENST00000495953 CHMP7Q8WUX9 453 aaPredicted RBP25.65■■□□□ 1.7
RAPGEF3-215ENST00000495953 CSRNP3Q8WYN3 585 aa25.63■■□□□ 1.69
RAPGEF3-215ENST00000495953 CARMIL1Q5VZK9 1371 aa25.6■■□□□ 1.69
RAPGEF3-215ENST00000495953 GRIN2AQ12879 1464 aa25.55■■□□□ 1.68
RAPGEF3-215ENST00000495953 FAM9AQ8IZU1 332 aaPredicted RBP25.54■■□□□ 1.68
RAPGEF3-215ENST00000495953 PRXQ9BXM0 1461 aa25.53■■□□□ 1.68
RAPGEF3-215ENST00000495953 CEP170Q5SW79 1584 aa25.52■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms